Wall clock time and date at job start Tue Mar 31 2020 14:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 C 1.53000 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47234 * 305.00095 * 5 4 3 7 7 N 1.46502 * 109.47006 * 65.00294 * 5 4 3 8 8 C 1.39928 * 119.99817 * 204.99944 * 7 5 4 9 9 C 1.38716 * 120.08191 * 359.97438 * 8 7 5 10 10 C 1.38209 * 120.01917 * 179.97438 * 9 8 7 11 11 C 1.38534 * 120.17487 * 0.02562 * 10 9 8 12 12 F 1.35098 * 119.92087 * 180.02562 * 11 10 9 13 13 C 1.38354 * 120.15874 * 0.02562 * 11 10 9 14 14 C 1.38722 * 119.98146 * 359.70110 * 13 11 10 15 15 O 1.35795 * 120.08881 * 180.29551 * 14 13 11 16 16 C 1.34805 * 116.99969 * 354.40648 * 15 14 13 17 17 H 1.07994 * 119.99771 * 5.05881 * 16 15 14 18 18 C 1.38627 * 119.99556 * 185.06187 * 16 15 14 19 19 N 1.31586 * 119.99442 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00532 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46692 * 89.99920 * 20 18 16 22 22 H 1.48493 * 109.47354 * 209.99977 * 20 18 16 23 23 H 1.48496 * 109.46748 * 330.00403 * 20 18 16 24 24 C 1.50697 * 109.47081 * 185.00304 * 5 4 3 25 25 O 1.20834 * 120.00003 * 240.00140 * 24 5 4 26 26 O 1.34228 * 120.00493 * 60.00119 * 24 5 4 27 27 C 1.45198 * 117.00291 * 180.02562 * 26 24 5 28 28 H 1.09004 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47146 * 299.99933 * 1 2 3 30 30 H 1.08998 * 109.47344 * 59.99793 * 1 2 3 31 31 H 1.08997 * 109.47146 * 240.00067 * 2 1 3 32 32 H 1.08996 * 109.46839 * 120.00199 * 2 1 3 33 33 H 1.08997 * 109.47008 * 59.99982 * 3 2 1 34 34 H 1.08998 * 109.47132 * 300.00336 * 3 2 1 35 35 H 1.08997 * 109.47154 * 60.00262 * 4 3 2 36 36 H 1.08998 * 109.47663 * 300.00201 * 4 3 2 37 37 H 0.96997 * 120.00000 * 25.00194 * 7 5 4 38 38 H 1.08009 * 119.99019 * 0.02562 * 9 8 7 39 39 H 1.07995 * 119.91431 * 180.02562 * 10 9 8 40 40 H 1.07999 * 120.00925 * 180.02562 * 13 11 10 41 41 H 0.96999 * 119.99604 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46816 * 179.97438 * 27 26 24 43 43 H 1.09000 * 109.47142 * 299.99828 * 27 26 24 44 44 H 1.08998 * 109.47246 * 59.99970 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6458 3.4235 -0.8423 7 7 3.6920 3.5406 1.2513 8 6 3.5603 4.9328 1.3000 9 6 3.7973 5.6938 0.1647 10 6 3.6664 7.0688 0.2142 11 6 3.2991 7.6912 1.3960 12 9 3.1721 9.0356 1.4384 13 6 3.0620 6.9394 2.5330 14 6 3.1859 5.5585 2.4893 15 8 2.9479 4.8180 3.6024 16 6 2.7084 5.4911 4.7456 17 1 2.6308 6.5681 4.7319 18 6 2.5619 4.8006 5.9387 19 7 2.3287 5.4577 7.0546 20 14 2.6955 2.9376 5.9623 21 1 4.1086 2.5456 6.1966 22 1 1.8441 2.3939 7.0507 23 1 2.2403 2.3922 4.6583 24 6 5.5820 2.8866 -0.1233 25 8 6.2589 3.3845 0.7451 26 8 6.1679 2.3351 -1.1976 27 6 7.6185 2.3723 -1.2493 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 3.5264 3.0097 2.0460 38 1 4.0835 5.2116 -0.7584 39 1 3.8509 7.6595 -0.6709 40 1 2.7753 7.4272 3.4530 41 1 2.2265 4.9746 7.8896 42 1 7.9617 1.8939 -2.1666 43 1 7.9562 3.4085 -1.2312 44 1 8.0264 1.8421 -0.3887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155419869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:18 Heat of formation + Delta-G solvation = -157.248838 kcal Electronic energy + Delta-G solvation = -28267.356508 eV Core-core repulsion = 24099.245558 eV Total energy + Delta-G solvation = -4168.110950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.71262 -41.76227 -40.91303 -38.75968 -37.66313 -37.27235 -35.42678 -34.45862 -32.50462 -31.16813 -29.35669 -28.99655 -27.28140 -27.02136 -24.08138 -23.50266 -22.98953 -21.82567 -21.45809 -20.06016 -19.60400 -18.66187 -18.06996 -17.97893 -17.28577 -17.19166 -16.97296 -16.53558 -16.28217 -15.85347 -15.71160 -15.57221 -15.36874 -14.96436 -14.88900 -14.45168 -14.27649 -14.19340 -14.02611 -13.72523 -13.57854 -13.33090 -13.19147 -12.94903 -12.68460 -12.61440 -12.25177 -12.17834 -12.12106 -11.99001 -11.80496 -11.75616 -11.57496 -11.51221 -11.35003 -10.93250 -10.82391 -9.56457 -8.50608 -8.24452 -6.20530 0.36419 0.49423 1.16532 1.29117 1.34441 1.48376 1.65566 2.25410 2.40345 2.68735 2.88148 3.06427 3.51177 3.55513 3.80797 3.84371 4.01132 4.15358 4.18948 4.26068 4.34166 4.35121 4.36183 4.42525 4.47304 4.63518 4.72731 4.83328 4.86041 4.88062 5.04410 5.06409 5.13213 5.18389 5.27302 5.34378 5.35408 5.36922 5.46354 5.56233 5.56577 5.81191 5.96815 6.30227 6.58980 6.79391 6.82859 7.52234 8.61309 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007604 B = 0.005267 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.571550 B = 5315.168107 C = 6936.705954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.112 4.112 5 C 0.169 3.831 6 H 0.144 0.856 7 N -0.720 5.720 8 C 0.164 3.836 9 C -0.132 4.132 10 C -0.156 4.156 11 C 0.068 3.932 12 F -0.155 7.155 13 C -0.238 4.238 14 C 0.095 3.905 15 O -0.230 6.230 16 C -0.393 4.393 17 H 0.075 0.925 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.969 3.031 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.248 1.248 24 C 0.436 3.564 25 O -0.531 6.531 26 O -0.354 6.354 27 C 0.027 3.973 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.403 0.597 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.284 0.716 42 H 0.137 0.863 43 H 0.055 0.945 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -12.555 -22.174 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.150 4.150 5 C 0.061 3.939 6 H 0.161 0.839 7 N -0.352 5.352 8 C 0.062 3.938 9 C -0.155 4.155 10 C -0.175 4.175 11 C 0.047 3.953 12 F -0.134 7.134 13 C -0.259 4.259 14 C 0.043 3.957 15 O -0.138 6.138 16 C -0.469 4.469 17 H 0.092 0.908 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.171 1.171 24 C 0.277 3.723 25 O -0.419 6.419 26 O -0.270 6.270 27 C -0.066 4.066 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.239 0.761 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.155 0.845 43 H 0.074 0.926 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.517 -12.647 -21.840 25.482 hybrid contribution 0.264 0.398 1.706 1.771 sum 3.782 -12.249 -20.134 23.869 Atomic orbital electron populations 1.21786 0.96002 1.01849 1.01625 1.21505 0.95845 0.96031 1.02528 1.21597 0.93392 0.97730 1.02764 1.21839 0.97124 0.91096 1.04933 1.20782 0.85234 0.98107 0.89806 0.83926 1.44238 1.75830 1.02479 1.12656 1.17203 1.00365 0.84859 0.91335 1.20384 1.05789 0.92573 0.96719 1.20834 1.05093 0.94932 0.96689 1.17369 1.06340 0.76374 0.95194 1.91392 1.94257 1.30417 1.97288 1.20930 1.11570 0.94068 0.99324 1.18667 1.00001 0.89626 0.87382 1.83426 1.80969 1.34446 1.14959 1.20597 1.49928 0.92819 0.83592 0.90779 1.25275 0.95615 1.05053 0.92899 1.69754 1.48755 1.38635 0.99392 0.85234 0.78606 0.77758 0.79269 1.19846 1.19454 1.17142 1.25403 0.93837 0.73913 0.79149 1.90727 1.66400 1.43029 1.41771 1.86501 1.24957 1.72415 1.43078 1.23507 0.75530 1.02860 1.04700 0.92119 0.94140 0.92060 0.90133 0.92681 0.93455 0.90068 0.86429 0.91646 0.76137 0.82205 0.82098 0.86677 0.90643 0.84499 0.92591 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.12 -1.80 5.93 30.59 0.18 -1.62 16 3 C -0.12 -1.98 5.10 30.59 0.16 -1.82 16 4 C -0.11 -1.84 4.72 30.59 0.14 -1.70 16 5 C 0.17 3.66 2.19 44.24 0.10 3.75 16 6 H 0.14 2.33 6.49 -2.39 -0.02 2.32 16 7 N -0.72 -22.60 4.21 -321.96 -1.36 -23.95 16 8 C 0.16 6.04 6.57 38.27 0.25 6.29 16 9 C -0.13 -3.99 9.16 22.38 0.20 -3.78 16 10 C -0.16 -4.93 10.02 22.33 0.22 -4.71 16 11 C 0.07 2.71 7.29 22.37 0.16 2.87 16 12 F -0.15 -6.09 17.26 44.97 0.78 -5.32 16 13 C -0.24 -11.16 9.14 22.41 0.20 -10.95 16 14 C 0.09 4.42 6.67 22.69 0.15 4.57 16 15 O -0.23 -12.11 7.83 -22.99 -0.18 -12.29 16 16 C -0.39 -23.20 9.95 67.91 0.68 -22.53 16 17 H 0.07 4.70 5.44 -2.91 -0.02 4.68 16 18 C 0.01 0.57 5.49 84.82 0.47 1.03 16 19 N -0.92 -55.93 13.96 21.61 0.30 -55.63 16 20 Si 0.97 44.77 28.62 68.60 1.96 46.73 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 24 C 0.44 11.01 7.18 71.23 0.51 11.52 16 25 O -0.53 -18.58 16.11 21.94 0.35 -18.23 16 26 O -0.35 -6.82 10.37 -51.40 -0.53 -7.35 16 27 C 0.03 0.42 10.56 113.37 1.20 1.62 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 1.07 7.75 -2.39 -0.02 1.06 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 1.32 7.99 -2.39 -0.02 1.30 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.40 13.98 7.97 -92.71 -0.74 13.24 16 38 H 0.16 3.51 6.20 -2.91 -0.02 3.49 16 39 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.12 6.02 5.64 -2.91 -0.02 6.00 16 41 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 44 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 Total: -1.00 -72.80 374.82 6.96 -65.84 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.29 Total: 27.34 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 5.34 Total: -17.15 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.05 Total: -79.58 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.36 Total: -37.87 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.78 Total: -5.32 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.96 Total: 46.73 kcal Total: -72.80 6.96 -65.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155419869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.404 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds