Wall clock time and date at job start Tue Mar 31 2020 15:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46838 * 304.99479 * 4 3 2 6 6 N 1.46501 * 109.47308 * 64.99601 * 4 3 2 7 7 C 1.39925 * 119.99894 * 275.00200 * 6 4 3 8 8 C 1.38709 * 120.07983 * 359.72280 * 7 6 4 9 9 C 1.38218 * 120.01625 * 179.97438 * 8 7 6 10 10 C 1.38528 * 120.17682 * 0.02562 * 9 8 7 11 11 F 1.35100 * 119.92434 * 179.97438 * 10 9 8 12 12 C 1.38357 * 120.15767 * 0.02562 * 10 9 8 13 13 C 1.38722 * 119.98170 * 359.69755 * 12 10 9 14 14 O 1.35794 * 120.09185 * 180.29731 * 13 12 10 15 15 C 1.34800 * 116.99884 * 354.40487 * 14 13 12 16 16 H 1.08009 * 120.00007 * 5.06220 * 15 14 13 17 17 C 1.38627 * 120.00310 * 185.05995 * 15 14 13 18 18 N 1.31581 * 120.00031 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99837 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47526 * 89.99826 * 19 17 15 21 21 H 1.48503 * 109.47261 * 209.99702 * 19 17 15 22 22 H 1.48506 * 109.47226 * 329.99694 * 19 17 15 23 23 C 1.50698 * 109.46949 * 185.00088 * 4 3 2 24 24 O 1.20833 * 119.99654 * 239.99448 * 23 4 3 25 25 O 1.34226 * 120.00410 * 59.99690 * 23 4 3 26 26 C 1.45205 * 117.00056 * 180.02562 * 25 23 4 27 27 C 1.52998 * 109.46870 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47492 * 60.00158 * 1 2 3 29 29 H 1.09007 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47378 * 299.99692 * 1 2 3 31 31 H 1.09006 * 109.46810 * 239.99910 * 2 1 3 32 32 H 1.08998 * 109.47492 * 119.99842 * 2 1 3 33 33 H 1.08997 * 109.47417 * 59.99613 * 3 2 1 34 34 H 1.09005 * 109.46800 * 299.99858 * 3 2 1 35 35 H 0.97000 * 119.99742 * 94.72817 * 6 4 3 36 36 H 1.08004 * 119.99291 * 0.02562 * 8 7 6 37 37 H 1.08001 * 119.90998 * 180.02562 * 9 8 7 38 38 H 1.08004 * 120.00865 * 180.02562 * 12 10 9 39 39 H 0.97000 * 119.99608 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.46651 * 299.99194 * 26 25 23 41 41 H 1.08987 * 109.47283 * 59.99894 * 26 25 23 42 42 H 1.08997 * 109.47408 * 299.99414 * 27 26 25 43 43 H 1.09000 * 109.47539 * 60.00140 * 27 26 25 44 44 H 1.09001 * 109.47016 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 7 4.0578 0.8588 -1.2527 7 6 4.1914 -0.5289 -1.3724 8 6 3.8678 -1.3531 -0.3047 9 6 3.9998 -2.7237 -0.4246 10 6 4.4554 -3.2785 -1.6093 11 9 4.5829 -4.6188 -1.7207 12 6 4.7812 -2.4631 -2.6785 13 6 4.6458 -1.0870 -2.5674 14 8 4.9592 -0.2850 -3.6174 15 6 5.5054 -0.8772 -4.6982 16 1 5.5999 -1.9526 -4.7347 17 6 5.9458 -0.1062 -5.7628 18 7 6.4793 -0.6844 -6.8175 19 14 5.7830 1.7536 -5.6993 20 1 7.0064 2.3372 -5.0928 21 1 5.6124 2.2828 -7.0763 22 1 4.6007 2.1193 -4.8784 23 6 4.0723 2.8579 0.1232 24 8 4.7667 3.3306 -0.7453 25 8 3.7485 3.5934 1.1983 26 6 4.2672 4.9486 1.2504 27 6 3.7967 5.6254 2.5394 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 4.2845 1.4342 -2.0000 36 1 3.5119 -0.9238 0.6203 37 1 3.7469 -3.3639 0.4077 38 1 5.1358 -2.8982 -3.6013 39 1 6.7878 -0.1448 -7.5622 40 1 5.3567 4.9215 1.2316 41 1 3.9027 5.5105 0.3906 42 1 2.7072 5.6525 2.5588 43 1 4.1616 5.0634 3.3991 44 1 4.1857 6.6429 2.5783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155482841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:02 Heat of formation + Delta-G solvation = -131.139766 kcal Electronic energy + Delta-G solvation = -28325.533965 eV Core-core repulsion = 24158.555190 eV Total energy + Delta-G solvation = -4166.978775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.13379 -40.82270 -39.51333 -37.60869 -36.69508 -35.68521 -33.44887 -32.38900 -32.06868 -30.15082 -29.53767 -27.19588 -25.43688 -25.08950 -23.23641 -22.44790 -21.45914 -21.16194 -20.20396 -18.40003 -18.06716 -17.44679 -16.95383 -16.80631 -16.19296 -15.53312 -15.38038 -15.19573 -14.90582 -14.66377 -14.21874 -14.02477 -13.88500 -13.71870 -13.51029 -13.37758 -13.08346 -12.99177 -12.79196 -12.38385 -12.21659 -12.18165 -11.97777 -11.79223 -11.61141 -11.57190 -11.37688 -11.09752 -10.86770 -10.75742 -10.70147 -10.37070 -10.32118 -10.26851 -9.56756 -9.49843 -8.89664 -7.86843 -6.68598 -6.44045 -4.08895 1.94759 2.04138 2.08566 2.35392 3.20677 3.26877 3.39221 3.72874 4.21327 4.30339 4.39044 4.58979 4.65099 4.70490 4.80186 4.85432 4.99894 5.05531 5.10264 5.10898 5.18114 5.38654 5.44892 5.47652 5.51332 5.58484 5.65826 5.69967 5.81602 5.82929 5.93598 6.10971 6.14078 6.23923 6.26974 6.40903 6.43194 6.67105 6.89923 6.95579 7.38167 7.54594 7.60809 7.80807 7.98493 8.13328 8.90435 9.48647 10.63276 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.004973 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.896661 B = 5629.447515 C = 7850.904547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.129 4.129 4 C 0.171 3.829 5 H 0.114 0.886 6 N -0.733 5.733 7 C 0.148 3.852 8 C -0.143 4.143 9 C -0.193 4.193 10 C 0.093 3.907 11 F -0.154 7.154 12 C -0.227 4.227 13 C 0.132 3.868 14 O -0.212 6.212 15 C -0.386 4.386 16 H 0.107 0.893 17 C 0.066 3.934 18 N -0.876 5.876 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C 0.457 3.543 24 O -0.494 6.494 25 O -0.356 6.356 26 C 0.060 3.940 27 C -0.151 4.151 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.280 0.720 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 7.634 18.297 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.169 4.169 4 C 0.063 3.937 5 H 0.131 0.869 6 N -0.370 5.370 7 C 0.049 3.951 8 C -0.166 4.166 9 C -0.213 4.213 10 C 0.072 3.928 11 F -0.133 7.133 12 C -0.248 4.248 13 C 0.078 3.922 14 O -0.118 6.118 15 C -0.461 4.461 16 H 0.125 0.875 17 C -0.138 4.138 18 N -0.514 5.514 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.184 1.184 23 C 0.298 3.702 24 O -0.379 6.379 25 O -0.273 6.273 26 C -0.014 4.014 27 C -0.208 4.208 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.148 0.852 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.685 8.088 17.914 21.488 hybrid contribution 0.358 0.803 -0.624 1.078 sum -8.327 8.891 17.290 21.151 Atomic orbital electron populations 1.21766 0.96020 1.01645 1.01332 1.21961 0.95668 0.95616 1.03546 1.22143 0.92453 0.99084 1.03181 1.20246 0.95142 0.87254 0.91101 0.86906 1.44065 1.75220 1.03682 1.14057 1.16941 1.02953 0.82962 0.92268 1.20245 1.06536 0.92273 0.97530 1.20337 1.09040 0.94882 0.97037 1.17268 1.03853 0.76371 0.95318 1.91402 1.94209 1.30918 1.96755 1.20930 1.10719 0.92703 1.00489 1.18251 0.97906 0.88964 0.87092 1.83513 1.70941 1.35144 1.22179 1.20728 1.38612 0.94571 0.92188 0.87525 1.24430 0.95104 1.00158 0.94109 1.69655 1.38508 1.36860 1.06351 0.86220 0.79965 0.83413 0.77514 1.19827 1.20795 1.18354 1.23928 0.77803 0.89011 0.79454 1.90720 1.34800 1.72119 1.40299 1.86480 1.70004 1.26984 1.43785 1.23050 0.99301 0.79343 0.99702 1.21799 1.02680 1.00174 0.96169 0.92934 0.92609 0.93159 0.89675 0.91433 0.90302 0.91070 0.74843 0.85174 0.86170 0.83722 0.90992 0.91134 0.91160 0.91436 0.91408 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.10 16 2 C -0.13 -1.44 4.25 -26.73 -0.11 -1.55 16 3 C -0.13 -1.42 4.85 -26.73 -0.13 -1.55 16 4 C 0.17 2.21 2.73 -69.08 -0.19 2.02 16 5 H 0.11 1.26 6.48 -51.93 -0.34 0.92 16 6 N -0.73 -12.47 5.05 -53.12 -0.27 -12.74 16 7 C 0.15 2.71 5.50 -83.52 -0.46 2.25 16 8 C -0.14 -2.19 6.73 -39.41 -0.27 -2.45 16 9 C -0.19 -3.12 10.02 -39.48 -0.40 -3.51 16 10 C 0.09 1.78 7.29 -39.43 -0.29 1.49 16 11 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 12 C -0.23 -4.93 9.14 -39.36 -0.36 -5.29 16 13 C 0.13 2.93 6.67 -38.93 -0.26 2.67 16 14 O -0.21 -5.39 7.83 0.00 0.00 -5.39 16 15 C -0.39 -10.71 9.94 30.88 0.31 -10.40 16 16 H 0.11 3.05 5.44 -52.48 -0.29 2.76 16 17 C 0.07 1.83 5.49 -17.52 -0.10 1.74 16 18 N -0.88 -25.30 13.96 55.48 0.77 -24.52 16 19 Si 0.90 21.89 28.62 -169.99 -4.86 17.02 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.46 6.36 7.32 36.00 0.26 6.62 16 24 O -0.49 -8.65 15.59 -18.76 -0.29 -8.95 16 25 O -0.36 -4.06 10.03 -39.25 -0.39 -4.46 16 26 C 0.06 0.57 6.19 37.16 0.23 0.80 16 27 C -0.15 -0.96 10.29 37.16 0.38 -0.57 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.18 5.40 -51.93 -0.28 0.90 16 32 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 33 H 0.08 0.71 8.00 -51.93 -0.42 0.30 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.41 8.09 7.17 -40.82 -0.29 7.80 16 36 H 0.13 1.57 4.03 -52.48 -0.21 1.36 16 37 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.15 3.36 5.64 -52.48 -0.30 3.06 16 39 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 41 H 0.07 0.68 8.13 -51.94 -0.42 0.25 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -30.37 364.14 -6.33 -36.70 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.81 Total: 8.58 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.00 Total: -8.83 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.51 Total: -37.26 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.69 Total: -18.79 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.86 Total: 17.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.37 -6.33 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155482841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.444 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds