Wall clock time and date at job start Tue Mar 31 2020 15:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46838 * 304.99479 * 4 3 2 6 6 N 1.46501 * 109.47308 * 64.99601 * 4 3 2 7 7 C 1.39925 * 119.99894 * 275.00200 * 6 4 3 8 8 C 1.38709 * 120.07983 * 359.72280 * 7 6 4 9 9 C 1.38218 * 120.01625 * 179.97438 * 8 7 6 10 10 C 1.38528 * 120.17682 * 0.02562 * 9 8 7 11 11 F 1.35100 * 119.92434 * 179.97438 * 10 9 8 12 12 C 1.38357 * 120.15767 * 0.02562 * 10 9 8 13 13 C 1.38722 * 119.98170 * 359.69755 * 12 10 9 14 14 O 1.35794 * 120.09185 * 180.29731 * 13 12 10 15 15 C 1.34800 * 116.99884 * 354.40487 * 14 13 12 16 16 H 1.08009 * 120.00007 * 5.06220 * 15 14 13 17 17 C 1.38627 * 120.00310 * 185.05995 * 15 14 13 18 18 N 1.31581 * 120.00031 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99837 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47526 * 89.99826 * 19 17 15 21 21 H 1.48503 * 109.47261 * 209.99702 * 19 17 15 22 22 H 1.48506 * 109.47226 * 329.99694 * 19 17 15 23 23 C 1.50698 * 109.46949 * 185.00088 * 4 3 2 24 24 O 1.20833 * 119.99654 * 239.99448 * 23 4 3 25 25 O 1.34226 * 120.00410 * 59.99690 * 23 4 3 26 26 C 1.45205 * 117.00056 * 180.02562 * 25 23 4 27 27 C 1.52998 * 109.46870 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47492 * 60.00158 * 1 2 3 29 29 H 1.09007 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47378 * 299.99692 * 1 2 3 31 31 H 1.09006 * 109.46810 * 239.99910 * 2 1 3 32 32 H 1.08998 * 109.47492 * 119.99842 * 2 1 3 33 33 H 1.08997 * 109.47417 * 59.99613 * 3 2 1 34 34 H 1.09005 * 109.46800 * 299.99858 * 3 2 1 35 35 H 0.97000 * 119.99742 * 94.72817 * 6 4 3 36 36 H 1.08004 * 119.99291 * 0.02562 * 8 7 6 37 37 H 1.08001 * 119.90998 * 180.02562 * 9 8 7 38 38 H 1.08004 * 120.00865 * 180.02562 * 12 10 9 39 39 H 0.97000 * 119.99608 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.46651 * 299.99194 * 26 25 23 41 41 H 1.08987 * 109.47283 * 59.99894 * 26 25 23 42 42 H 1.08997 * 109.47408 * 299.99414 * 27 26 25 43 43 H 1.09000 * 109.47539 * 60.00140 * 27 26 25 44 44 H 1.09001 * 109.47016 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 7 4.0578 0.8588 -1.2527 7 6 4.1914 -0.5289 -1.3724 8 6 3.8678 -1.3531 -0.3047 9 6 3.9998 -2.7237 -0.4246 10 6 4.4554 -3.2785 -1.6093 11 9 4.5829 -4.6188 -1.7207 12 6 4.7812 -2.4631 -2.6785 13 6 4.6458 -1.0870 -2.5674 14 8 4.9592 -0.2850 -3.6174 15 6 5.5054 -0.8772 -4.6982 16 1 5.5999 -1.9526 -4.7347 17 6 5.9458 -0.1062 -5.7628 18 7 6.4793 -0.6844 -6.8175 19 14 5.7830 1.7536 -5.6993 20 1 7.0064 2.3372 -5.0928 21 1 5.6124 2.2828 -7.0763 22 1 4.6007 2.1193 -4.8784 23 6 4.0723 2.8579 0.1232 24 8 4.7667 3.3306 -0.7453 25 8 3.7485 3.5934 1.1983 26 6 4.2672 4.9486 1.2504 27 6 3.7967 5.6254 2.5394 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 4.2845 1.4342 -2.0000 36 1 3.5119 -0.9238 0.6203 37 1 3.7469 -3.3639 0.4077 38 1 5.1358 -2.8982 -3.6013 39 1 6.7878 -0.1448 -7.5622 40 1 5.3567 4.9215 1.2316 41 1 3.9027 5.5105 0.3906 42 1 2.7072 5.6525 2.5588 43 1 4.1616 5.0634 3.3991 44 1 4.1857 6.6429 2.5783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155482841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:02 Heat of formation + Delta-G solvation = -149.101395 kcal Electronic energy + Delta-G solvation = -28326.312840 eV Core-core repulsion = 24158.555190 eV Total energy + Delta-G solvation = -4167.757650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.65899 -41.92945 -41.02670 -39.01135 -37.85669 -36.99391 -34.64453 -34.34232 -32.78857 -31.32864 -31.05990 -28.52578 -27.29119 -26.05589 -24.21356 -23.70488 -22.86581 -22.16444 -21.39727 -20.05156 -19.65925 -18.84281 -18.17387 -17.82335 -17.40438 -17.14433 -16.75912 -16.57080 -16.28019 -15.84765 -15.78353 -15.46179 -15.23444 -15.08218 -14.89722 -14.55742 -14.33658 -14.13616 -13.74299 -13.66619 -13.62116 -13.35329 -13.08683 -12.93713 -12.73640 -12.62866 -12.50499 -12.41105 -12.22510 -12.19044 -11.92100 -11.59707 -11.57171 -11.38377 -11.28465 -10.93115 -10.85226 -9.46969 -8.52462 -8.17392 -6.20764 0.42307 0.54841 0.99310 1.25976 1.30755 1.36853 1.45961 2.22618 2.43214 2.69605 2.93292 3.05867 3.46833 3.56644 3.81433 3.85289 3.98903 4.04892 4.06944 4.22579 4.28710 4.30438 4.34697 4.44236 4.52763 4.70191 4.80426 4.86133 4.93848 4.96087 4.99628 5.05776 5.11769 5.18396 5.30304 5.35548 5.37694 5.40141 5.45491 5.55889 5.58909 5.85001 5.99946 6.34976 6.51811 6.65808 6.82328 7.55185 8.59653 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.004973 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.896661 B = 5629.447515 C = 7850.904547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.121 4.121 4 C 0.167 3.833 5 H 0.144 0.856 6 N -0.739 5.739 7 C 0.162 3.838 8 C -0.124 4.124 9 C -0.153 4.153 10 C 0.068 3.932 11 F -0.156 7.156 12 C -0.237 4.237 13 C 0.089 3.911 14 O -0.237 6.237 15 C -0.390 4.390 16 H 0.079 0.921 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.268 1.268 22 H -0.262 1.262 23 C 0.461 3.539 24 O -0.537 6.537 25 O -0.345 6.345 26 C 0.050 3.950 27 C -0.143 4.143 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.399 0.601 36 H 0.179 0.821 37 H 0.166 0.834 38 H 0.112 0.888 39 H 0.284 0.716 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 8.731 23.134 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.160 4.160 4 C 0.060 3.940 5 H 0.161 0.839 6 N -0.373 5.373 7 C 0.061 3.939 8 C -0.146 4.146 9 C -0.173 4.173 10 C 0.048 3.952 11 F -0.135 7.135 12 C -0.259 4.259 13 C 0.037 3.963 14 O -0.145 6.145 15 C -0.467 4.467 16 H 0.097 0.903 17 C -0.184 4.184 18 N -0.564 5.564 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.192 1.192 22 H -0.186 1.186 23 C 0.304 3.696 24 O -0.427 6.427 25 O -0.260 6.260 26 C -0.023 4.023 27 C -0.200 4.200 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.234 0.766 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.731 9.178 22.835 26.848 hybrid contribution 0.850 0.366 -1.775 2.002 sum -9.880 9.543 21.060 25.144 Atomic orbital electron populations 1.21744 0.95055 1.01996 1.01804 1.21942 0.96604 0.95214 1.03020 1.22113 0.90484 0.99514 1.03919 1.20622 0.96434 0.87015 0.89897 0.83888 1.44272 1.74795 1.03005 1.15235 1.17157 1.01222 0.84106 0.91392 1.20775 1.04263 0.91611 0.98001 1.20882 1.04397 0.95645 0.96342 1.17415 1.05683 0.76224 0.95927 1.91395 1.94384 1.30852 1.96835 1.20895 1.11111 0.93391 1.00458 1.18745 1.00275 0.89195 0.88087 1.83463 1.73147 1.35364 1.22527 1.20625 1.38885 0.93631 0.93552 0.90321 1.25139 0.95196 1.04197 0.93828 1.69737 1.40944 1.38349 1.07365 0.85300 0.79483 0.78475 0.77925 1.19870 1.19231 1.18643 1.24103 0.76798 0.89415 0.79257 1.90717 1.36916 1.73077 1.41945 1.86477 1.69491 1.27773 1.42301 1.23345 0.99165 0.78390 1.01404 1.21812 1.03119 1.00758 0.94313 0.94133 0.92371 0.91086 0.92846 0.88920 0.87224 0.92690 0.76606 0.80380 0.81650 0.86975 0.90641 0.91717 0.91686 0.90785 0.90802 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.13 -2.29 4.25 30.59 0.13 -2.16 16 3 C -0.12 -2.19 4.85 30.59 0.15 -2.04 16 4 C 0.17 3.76 2.73 44.24 0.12 3.89 16 5 H 0.14 2.37 6.48 -2.39 -0.02 2.35 16 6 N -0.74 -24.21 5.05 -321.96 -1.63 -25.84 16 7 C 0.16 5.71 5.50 38.27 0.21 5.92 16 8 C -0.12 -3.25 6.73 22.38 0.15 -3.10 16 9 C -0.15 -4.28 10.02 22.33 0.22 -4.06 16 10 C 0.07 2.56 7.29 22.37 0.16 2.72 16 11 F -0.16 -5.84 17.26 44.97 0.78 -5.06 16 12 C -0.24 -10.79 9.14 22.41 0.20 -10.58 16 13 C 0.09 4.05 6.67 22.69 0.15 4.20 16 14 O -0.24 -12.73 7.83 -22.93 -0.18 -12.91 16 15 C -0.39 -23.30 9.94 67.91 0.68 -22.62 16 16 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 17 C 0.01 0.87 5.49 84.82 0.47 1.34 16 18 N -0.92 -56.39 13.96 21.61 0.30 -56.09 16 19 Si 0.97 47.30 28.62 68.60 1.96 49.26 16 20 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 23 C 0.46 11.86 7.32 71.24 0.52 12.39 16 24 O -0.54 -18.60 15.59 21.94 0.34 -18.26 16 25 O -0.34 -6.84 10.03 -51.37 -0.52 -7.36 16 26 C 0.05 0.85 6.19 71.98 0.45 1.30 16 27 C -0.14 -1.35 10.29 71.98 0.74 -0.61 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.30 5.40 -2.38 -0.01 1.29 16 32 H 0.09 1.15 6.37 -2.39 -0.02 1.14 16 33 H 0.11 1.38 8.00 -2.39 -0.02 1.36 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.40 15.78 7.17 -92.71 -0.66 15.12 16 36 H 0.18 3.01 4.03 -2.91 -0.01 2.99 16 37 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.11 5.76 5.64 -2.91 -0.02 5.74 16 39 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 40 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 41 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -72.85 364.14 6.51 -66.34 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.38 Total: 24.95 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 5.07 Total: -15.04 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.32 Total: -81.92 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.35 Total: -38.52 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.78 Total: -5.06 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.96 Total: 49.26 kcal Total: -72.85 6.51 -66.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155482841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.758 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds