Wall clock time and date at job start Tue Mar 31 2020 14:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00197 * 2 1 4 4 C 1.53001 * 109.47234 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47073 * 65.00017 * 4 3 2 6 6 C 1.46505 * 119.99896 * 269.99770 * 5 4 3 7 7 C 1.50703 * 109.46926 * 270.00109 * 6 5 4 8 8 H 1.07999 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99530 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00327 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00039 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46758 * 0.02562 * 11 9 7 13 13 H 1.48489 * 109.47206 * 119.99897 * 11 9 7 14 14 H 1.48501 * 109.47440 * 240.00463 * 11 9 7 15 15 C 1.34779 * 120.00054 * 89.99830 * 5 4 3 16 16 O 1.21273 * 120.00093 * 0.02562 * 15 5 4 17 17 C 1.50706 * 119.99767 * 179.97438 * 15 5 4 18 18 C 1.53000 * 109.46735 * 180.02562 * 17 15 5 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 S 1.75886 * 125.20482 * 270.02718 * 20 19 18 22 22 C 1.75887 * 90.96963 * 179.97438 * 21 20 19 23 23 C 1.33390 * 109.59564 * 0.02562 * 22 21 20 24 24 C 1.33391 * 125.20337 * 89.71858 * 20 19 18 25 25 C 1.50706 * 122.53753 * 0.02562 * 24 20 19 26 26 H 1.09000 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47111 * 300.00038 * 1 2 3 28 28 H 1.09001 * 109.46855 * 60.00449 * 1 2 3 29 29 H 1.08997 * 109.47239 * 59.99667 * 3 2 1 30 30 H 1.08999 * 109.46833 * 299.99911 * 3 2 1 31 31 H 1.08998 * 109.46873 * 305.00098 * 4 3 2 32 32 H 1.08997 * 109.46529 * 184.99983 * 4 3 2 33 33 H 1.08996 * 109.47101 * 30.00360 * 6 5 4 34 34 H 1.09003 * 109.46885 * 149.99968 * 6 5 4 35 35 H 0.97005 * 119.99845 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46797 * 60.00350 * 17 15 5 37 37 H 1.08992 * 109.47518 * 300.00347 * 17 15 5 38 38 H 1.09002 * 109.47398 * 300.00410 * 18 17 15 39 39 H 1.09001 * 109.47194 * 60.00591 * 18 17 15 40 40 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 41 41 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 42 42 H 1.07998 * 125.20093 * 180.02562 * 22 21 20 43 43 H 1.07997 * 122.54103 * 180.02562 * 23 22 21 44 44 H 1.08994 * 109.47308 * 90.00244 * 25 24 20 45 45 H 1.08997 * 109.47040 * 210.00304 * 25 24 20 46 46 H 1.09003 * 109.46899 * 329.99496 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1063 -0.8926 -1.3402 7 6 5.5018 -1.2981 -0.9411 8 1 6.2204 -0.5461 -0.6504 9 6 5.8611 -2.6292 -0.9471 10 7 4.9862 -3.5449 -1.3016 11 14 7.5906 -3.1321 -0.4517 12 1 8.3758 -1.9221 -0.0984 13 1 7.5253 -4.0392 0.7221 14 1 8.2456 -3.8345 -1.5843 15 6 4.2634 1.3329 -2.3200 16 8 4.1566 2.5387 -2.2459 17 6 4.7178 0.6944 -3.6072 18 6 4.9754 1.7815 -4.6526 19 6 5.4361 1.1333 -5.9596 20 6 5.6904 2.2040 -6.9891 21 16 4.4948 2.8311 -8.1165 22 6 5.6810 3.9291 -8.8100 23 6 6.8515 3.7732 -8.1896 24 6 6.8551 2.8253 -7.1808 25 6 8.0833 2.5152 -6.3644 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9784 2.1766 0.0902 33 1 3.3859 -1.3632 -0.6713 34 1 3.9139 -1.2123 -2.3644 35 1 5.2391 -4.4814 -1.3061 36 1 3.9444 0.0172 -3.9697 37 1 5.6367 0.1353 -3.4310 38 1 4.0566 2.3410 -4.8290 39 1 5.7490 2.4583 -4.2899 40 1 6.3547 0.5736 -5.7835 41 1 4.6623 0.4567 -6.3222 42 1 5.4907 4.6234 -9.6151 43 1 7.7284 4.3467 -8.4510 44 1 8.6509 1.7210 -6.8493 45 1 8.7026 3.4087 -6.2860 46 1 7.7845 2.1916 -5.3673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156672120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:02 Heat of formation + Delta-G solvation = -86.580430 kcal Electronic energy + Delta-G solvation = -25434.804334 eV Core-core repulsion = 21835.970972 eV Total energy + Delta-G solvation = -3598.833361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87286 -39.44412 -38.72913 -36.63448 -35.71059 -34.53360 -32.24441 -31.24685 -29.83136 -28.81615 -27.27086 -26.51023 -24.80257 -24.27983 -23.35247 -22.30063 -19.90265 -19.22712 -18.59432 -18.24680 -17.82527 -17.39031 -16.99583 -16.76656 -16.38927 -16.16337 -16.01440 -15.71155 -15.10783 -14.92922 -14.54277 -14.31088 -13.91850 -13.86963 -13.58218 -13.38225 -13.27177 -13.22399 -12.94992 -12.85508 -12.74887 -12.69065 -12.60649 -12.51857 -12.41321 -12.18850 -12.09382 -11.85547 -11.72937 -11.60500 -11.46405 -10.77971 -10.61497 -10.44257 -9.45774 -9.41336 -9.21401 -8.14900 -6.29544 0.11617 0.76812 1.14304 1.42572 1.45636 1.56035 1.79587 1.81512 2.33727 2.48685 2.93720 3.15255 3.72276 3.83939 4.02583 4.11576 4.14762 4.21740 4.33064 4.37373 4.39715 4.48902 4.52780 4.55504 4.62384 4.66588 4.69531 4.76507 4.80311 4.83847 4.85427 4.89573 4.93814 5.06511 5.14148 5.14764 5.24786 5.35876 5.38022 5.59467 5.70187 5.70866 5.90031 6.12782 6.28302 6.63973 6.87343 7.34013 7.45688 8.90822 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.003527 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.643960 B = 7935.940231 C = 9865.928726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.261 3.739 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.022 3.978 10 N -0.919 5.919 11 Si 0.955 3.045 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.276 1.276 15 C 0.509 3.491 16 O -0.597 6.597 17 C -0.128 4.128 18 C -0.078 4.078 19 C -0.045 4.045 20 C -0.187 4.187 21 S 0.071 5.929 22 C -0.213 4.213 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.097 4.097 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.187 0.813 43 H 0.160 0.840 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 11.108 -9.954 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.021 4.021 4 C -0.009 4.009 5 N -0.323 5.323 6 C 0.140 3.860 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.178 4.178 10 N -0.558 5.558 11 Si 0.781 3.219 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.201 1.201 15 C 0.299 3.701 16 O -0.481 6.481 17 C -0.167 4.167 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.304 4.304 21 S 0.336 5.664 22 C -0.348 4.348 23 C -0.168 4.168 24 C -0.130 4.130 25 C -0.156 4.156 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.204 0.796 43 H 0.177 0.823 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.608 11.055 -10.226 15.284 hybrid contribution 1.813 -0.139 0.672 1.939 sum -0.795 10.916 -9.554 14.529 Atomic orbital electron populations 1.22875 0.80008 1.03361 1.00608 1.88008 1.21161 1.28252 1.95472 1.22921 0.93662 0.84740 1.00775 1.21473 0.92864 0.99322 0.87200 1.48191 1.63799 1.09039 1.11252 1.19022 0.95695 0.74180 0.97142 1.21737 0.97997 0.92477 1.46184 0.92956 1.25632 1.00909 0.96337 0.94917 1.70044 1.36009 1.01456 1.48339 0.85550 0.80118 0.78203 0.78054 1.19460 1.20675 1.20122 1.20983 0.76241 0.86455 0.86391 1.90553 1.56871 1.15442 1.85215 1.21583 1.03719 0.99330 0.92116 1.21145 1.01326 0.96462 0.92706 1.20111 1.02995 0.94299 0.91013 1.24383 0.96817 1.05382 1.03771 1.84282 1.15436 1.35597 1.31117 1.25849 0.96165 1.05870 1.06961 1.20304 0.99457 1.00129 0.96907 1.19187 0.96259 0.98165 0.99376 1.20576 0.93822 1.02709 0.98459 0.89242 0.92390 0.93999 0.90090 0.94235 0.90315 0.89010 0.95723 0.95746 0.92448 0.88999 0.88587 0.92574 0.92234 0.89216 0.90319 0.79570 0.82282 0.90375 0.90317 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.75 9.53 -148.98 -1.42 -16.17 16 3 C 0.06 1.85 6.28 71.98 0.45 2.30 16 4 C 0.11 4.33 5.81 86.38 0.50 4.83 16 5 N -0.59 -25.70 2.42 -826.15 -2.00 -27.70 16 6 C 0.26 12.82 4.78 85.63 0.41 13.22 16 7 C -0.55 -28.64 9.28 25.60 0.24 -28.40 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.02 1.18 5.46 84.65 0.46 1.64 16 10 N -0.92 -51.14 13.29 21.45 0.28 -50.86 16 11 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 15 C 0.51 21.43 7.67 87.66 0.67 22.11 16 16 O -0.60 -26.68 15.56 -3.01 -0.05 -26.73 16 17 C -0.13 -4.65 4.25 29.85 0.13 -4.53 16 18 C -0.08 -2.46 4.49 30.59 0.14 -2.32 16 19 C -0.05 -1.20 5.07 29.85 0.15 -1.05 16 20 C -0.19 -4.78 5.76 24.59 0.14 -4.64 16 21 S 0.07 1.63 23.33 -56.49 -1.32 0.31 16 22 C -0.21 -4.09 11.23 66.72 0.75 -3.34 16 23 C -0.14 -2.75 9.98 21.22 0.21 -2.54 16 24 C -0.12 -2.76 5.80 -20.92 -0.12 -2.89 16 25 C -0.10 -1.99 9.60 71.24 0.68 -1.31 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 3.04 8.07 -2.39 -0.02 3.02 16 32 H 0.09 3.31 7.42 -2.39 -0.02 3.30 16 33 H 0.02 1.33 7.11 -2.39 -0.02 1.32 16 34 H 0.02 1.25 6.44 -2.39 -0.02 1.23 16 35 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 36 H 0.09 3.26 7.40 -2.39 -0.02 3.24 16 37 H 0.10 3.67 8.00 -2.39 -0.02 3.65 16 38 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.06 1.98 7.79 -2.39 -0.02 1.96 16 40 H 0.09 2.29 7.33 -2.39 -0.02 2.27 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 46 H 0.06 1.38 6.95 -2.39 -0.02 1.36 16 Total: -1.00 -63.67 393.44 4.54 -59.13 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.95 Total: 23.08 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 6.06 Total: -4.93 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.71 Total: -78.55 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.47 Total: -42.90 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.31 kcal Total: -63.67 4.54 -59.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156672120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.448 kcal (2) G-P(sol) polarization free energy of solvation -63.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds