Wall clock time and date at job start Tue Mar 31 2020 13:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38545 * 119.80279 * 2 1 4 4 C 1.37796 * 120.29863 * 179.69746 * 3 2 1 5 5 C 1.39704 * 119.90505 * 0.59344 * 4 3 2 6 6 C 1.47541 * 120.18972 * 179.70045 * 5 4 3 7 7 O 1.21583 * 120.00002 * 179.72844 * 6 5 4 8 8 N 1.34777 * 119.99728 * 359.72535 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72391 * 8 6 5 10 10 H 1.08999 * 109.47228 * 325.27715 * 9 8 6 11 11 C 1.53001 * 109.47193 * 205.27836 * 9 8 6 12 12 C 1.50704 * 109.47083 * 64.99991 * 11 9 8 13 13 H 1.07998 * 119.99848 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99715 * 179.97438 * 12 11 9 15 15 N 1.31521 * 119.99439 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00367 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46861 * 89.99647 * 16 14 12 18 18 H 1.48494 * 109.47283 * 209.99831 * 16 14 12 19 19 H 1.48505 * 109.47099 * 330.00336 * 16 14 12 20 20 C 1.50698 * 109.47509 * 85.27815 * 9 8 6 21 21 C 1.38240 * 119.99595 * 39.72189 * 20 9 8 22 22 C 1.38237 * 119.99776 * 179.81296 * 21 20 9 23 23 C 1.38228 * 120.00003 * 0.39861 * 22 21 20 24 24 C 1.38233 * 120.00208 * 359.85654 * 23 22 21 25 25 C 1.38229 * 120.00591 * 220.00156 * 20 9 8 26 26 C 1.40137 * 119.61734 * 359.42971 * 5 4 3 27 27 O 1.35658 * 120.14501 * 180.29504 * 26 5 4 28 28 C 1.38051 * 119.80787 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47128 * 269.98172 * 1 2 3 30 30 H 1.08994 * 109.47052 * 29.98528 * 1 2 3 31 31 H 1.08998 * 109.46596 * 149.98097 * 1 2 3 32 32 H 1.07998 * 119.85356 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.04571 * 180.32476 * 4 3 2 34 34 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47384 * 185.00021 * 11 9 8 36 36 H 1.08994 * 109.47052 * 305.00248 * 11 9 8 37 37 H 0.96996 * 119.99474 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.00034 * 0.02562 * 21 20 9 39 39 H 1.08004 * 119.99803 * 180.23669 * 22 21 20 40 40 H 1.07998 * 120.00024 * 179.83262 * 23 22 21 41 41 H 1.08004 * 120.00112 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.99611 * 359.97438 * 25 20 9 43 43 H 0.96696 * 114.00074 * 90.00520 * 27 26 5 44 44 H 1.08004 * 119.95385 * 0.02573 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2022 0.0000 4 6 3.5735 1.2141 0.0063 5 6 4.2805 0.0092 0.0001 6 6 5.7559 0.0147 0.0001 7 8 6.3678 -1.0359 -0.0002 8 7 6.4254 1.1845 0.0005 9 6 7.8904 1.1899 0.0066 10 1 8.2544 0.3478 0.5953 11 6 8.3930 2.4974 0.6219 12 6 7.9880 2.5584 2.0723 13 1 7.4285 1.7456 2.5113 14 6 8.3327 3.6513 2.8389 15 7 7.9797 3.7042 4.1047 16 14 9.3023 5.0561 2.0801 17 1 8.3625 6.0591 1.5178 18 1 10.1441 5.6964 3.1225 19 1 10.1708 4.5297 0.9967 20 6 8.3992 1.0718 -1.4070 21 6 7.7631 1.7509 -2.4294 22 6 8.2321 1.6457 -3.7255 23 6 9.3321 0.8550 -4.0004 24 6 9.9649 0.1717 -2.9789 25 6 9.4982 0.2800 -1.6822 26 6 3.5803 -1.2046 -0.0003 27 8 4.2560 -2.3809 -0.0002 28 6 2.1933 -1.1979 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3632 -0.8898 -0.5141 32 1 1.6500 2.1342 -0.0004 33 1 4.1061 2.1537 0.0116 34 1 5.9373 2.0227 0.0011 35 1 9.4794 2.5408 0.5460 36 1 7.9575 3.3415 0.0874 37 1 8.2219 4.4733 4.6440 38 1 6.9019 2.3664 -2.2150 39 1 7.7375 2.1793 -4.5237 40 1 9.6968 0.7707 -5.0135 41 1 10.8240 -0.4464 -3.1938 42 1 9.9926 -0.2538 -0.8840 43 1 4.4515 -2.7221 0.8832 44 1 1.6494 -2.1310 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156953096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:36 Heat of formation + Delta-G solvation = -35.962626 kcal Electronic energy + Delta-G solvation = -27025.500723 eV Core-core repulsion = 23293.418363 eV Total energy + Delta-G solvation = -3732.082360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.32835 -39.23849 -38.02102 -36.82423 -35.18162 -33.06669 -32.51172 -30.99858 -30.51193 -29.92660 -29.31302 -27.48911 -25.00880 -22.73031 -22.49757 -22.18625 -21.76479 -20.41564 -19.71025 -18.03499 -17.33135 -17.07559 -16.43352 -16.05783 -15.35888 -15.08856 -14.91421 -14.78105 -14.32647 -14.23622 -13.88803 -13.87755 -13.68230 -13.08587 -13.06392 -12.88736 -12.69657 -12.55968 -12.38629 -12.09170 -11.94095 -11.74701 -11.49971 -11.28119 -11.07576 -10.74964 -10.63418 -10.48642 -10.23871 -9.89067 -9.39645 -9.28152 -8.91546 -8.65285 -8.64110 -8.58773 -8.40827 -8.27743 -6.13139 -4.12961 0.86275 1.24762 1.69916 1.73086 3.10992 3.23066 3.32702 3.36031 3.66862 3.88749 4.16976 4.26763 4.36309 4.68444 4.73456 5.00713 5.14387 5.18656 5.19934 5.20594 5.25387 5.30827 5.38881 5.44137 5.47116 5.57321 5.82384 5.83363 5.84492 5.88690 6.04536 6.20083 6.23473 6.30128 6.34622 6.40773 6.43034 6.71175 6.75091 6.78194 6.81239 6.93073 7.04581 7.32087 7.34853 7.63140 7.79180 8.09136 8.42046 8.76036 8.92652 9.47704 10.99598 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.004668 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.952628 B = 5996.610113 C = 8013.792017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 C -0.140 4.140 4 C -0.064 4.064 5 C -0.161 4.161 6 C 0.556 3.444 7 O -0.531 6.531 8 N -0.697 5.697 9 C 0.196 3.804 10 H 0.093 0.907 11 C -0.014 4.014 12 C -0.521 4.521 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.874 3.126 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.264 1.264 20 C -0.076 4.076 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.107 4.107 26 C 0.169 3.831 27 O -0.479 6.479 28 C -0.162 4.162 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.399 0.601 35 H 0.035 0.965 36 H 0.018 0.982 37 H 0.264 0.736 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.395 0.605 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 -5.312 -11.731 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.158 4.158 4 C -0.082 4.082 5 C -0.165 4.165 6 C 0.342 3.658 7 O -0.409 6.409 8 N -0.347 5.347 9 C 0.092 3.908 10 H 0.111 0.889 11 C -0.052 4.052 12 C -0.559 4.559 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.077 4.077 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.125 4.125 26 C 0.122 3.878 27 O -0.290 6.290 28 C -0.180 4.180 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.234 0.766 35 H 0.053 0.947 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.252 0.748 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.931 -5.897 -12.151 16.765 hybrid contribution 0.355 1.281 0.279 1.358 sum -9.576 -4.616 -11.872 15.936 Atomic orbital electron populations 1.20847 0.90801 1.02999 1.02665 1.19924 0.96221 0.92611 0.96506 1.20968 0.93888 0.97785 1.03135 1.21327 0.94347 0.97146 0.95411 1.20545 0.94210 0.93859 1.07861 1.17976 0.86419 0.84350 0.77016 1.90757 1.69281 1.31177 1.49636 1.45826 1.07348 1.07914 1.73643 1.19960 0.78579 1.02060 0.90238 0.88909 1.19883 0.97300 0.90918 0.97062 1.21014 1.36293 1.06010 0.92541 0.90616 1.24980 0.95335 0.98085 0.94646 1.69907 1.46525 1.30491 1.06659 0.86862 0.80830 0.82766 0.79380 1.20262 1.21300 1.18898 1.20562 0.95249 0.95376 0.96532 1.20918 0.99822 0.99482 0.92501 1.21046 0.97172 0.99576 0.96500 1.21013 0.96889 0.98517 0.98727 1.21060 0.99974 0.99948 0.93050 1.21037 0.96569 0.98255 0.96663 1.18457 0.89316 0.84941 0.95041 1.84718 1.76309 1.34476 1.33451 1.21250 0.93017 0.98522 1.05249 0.90728 0.91182 0.91378 0.85299 0.84868 0.76596 0.94724 0.96330 0.92633 0.86589 0.86673 0.86758 0.86491 0.86007 0.74753 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.00 36.01 0.36 -0.50 16 2 C -0.05 -0.56 5.88 -104.57 -0.62 -1.17 16 3 C -0.14 -1.57 9.67 -39.63 -0.38 -1.96 16 4 C -0.06 -0.85 9.54 -39.20 -0.37 -1.22 16 5 C -0.16 -2.58 5.89 -104.84 -0.62 -3.19 16 6 C 0.56 10.55 7.72 -12.47 -0.10 10.45 16 7 O -0.53 -11.56 14.82 -16.59 -0.25 -11.80 16 8 N -0.70 -12.85 3.97 -55.98 -0.22 -13.07 16 9 C 0.20 3.93 2.12 -69.08 -0.15 3.78 16 10 H 0.09 2.06 7.43 -51.93 -0.39 1.67 16 11 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 12 C -0.52 -13.86 9.39 -34.44 -0.32 -14.19 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 16 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 20 C -0.08 -1.38 4.92 -104.63 -0.51 -1.90 16 21 C -0.11 -1.79 9.33 -39.58 -0.37 -2.16 16 22 C -0.12 -1.81 10.05 -39.59 -0.40 -2.21 16 23 C -0.13 -1.86 10.05 -39.59 -0.40 -2.25 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.11 -1.82 9.67 -39.59 -0.38 -2.20 16 26 C 0.17 2.51 6.72 -38.70 -0.26 2.25 16 27 O -0.48 -7.28 11.58 -40.55 -0.47 -7.75 16 28 C -0.16 -1.93 9.62 -39.48 -0.38 -2.31 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.62 6.40 -52.49 -0.34 1.28 16 34 H 0.40 6.65 6.63 -40.82 -0.27 6.38 16 35 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 36 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.12 1.76 7.71 -52.49 -0.40 1.35 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.12 1.98 8.04 -52.48 -0.42 1.56 16 43 H 0.39 4.60 9.06 45.56 0.41 5.01 16 44 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -33.61 373.11 -9.84 -43.44 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.14 Total: 12.82 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -5.49 Total: -19.52 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.55 Total: -38.86 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.72 Total: -19.55 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.61 -9.84 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156953096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.482 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds