Wall clock time and date at job start Tue Mar 31 2020 13:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38545 * 119.80279 * 2 1 4 4 C 1.37796 * 120.29863 * 179.69746 * 3 2 1 5 5 C 1.39704 * 119.90505 * 0.59344 * 4 3 2 6 6 C 1.47541 * 120.18972 * 179.70045 * 5 4 3 7 7 O 1.21583 * 120.00002 * 179.72844 * 6 5 4 8 8 N 1.34777 * 119.99728 * 359.72535 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72391 * 8 6 5 10 10 H 1.08999 * 109.47228 * 325.27715 * 9 8 6 11 11 C 1.53001 * 109.47193 * 205.27836 * 9 8 6 12 12 C 1.50704 * 109.47083 * 64.99991 * 11 9 8 13 13 H 1.07998 * 119.99848 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99715 * 179.97438 * 12 11 9 15 15 N 1.31521 * 119.99439 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00367 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46861 * 89.99647 * 16 14 12 18 18 H 1.48494 * 109.47283 * 209.99831 * 16 14 12 19 19 H 1.48505 * 109.47099 * 330.00336 * 16 14 12 20 20 C 1.50698 * 109.47509 * 85.27815 * 9 8 6 21 21 C 1.38240 * 119.99595 * 39.72189 * 20 9 8 22 22 C 1.38237 * 119.99776 * 179.81296 * 21 20 9 23 23 C 1.38228 * 120.00003 * 0.39861 * 22 21 20 24 24 C 1.38233 * 120.00208 * 359.85654 * 23 22 21 25 25 C 1.38229 * 120.00591 * 220.00156 * 20 9 8 26 26 C 1.40137 * 119.61734 * 359.42971 * 5 4 3 27 27 O 1.35658 * 120.14501 * 180.29504 * 26 5 4 28 28 C 1.38051 * 119.80787 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47128 * 269.98172 * 1 2 3 30 30 H 1.08994 * 109.47052 * 29.98528 * 1 2 3 31 31 H 1.08998 * 109.46596 * 149.98097 * 1 2 3 32 32 H 1.07998 * 119.85356 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.04571 * 180.32476 * 4 3 2 34 34 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47384 * 185.00021 * 11 9 8 36 36 H 1.08994 * 109.47052 * 305.00248 * 11 9 8 37 37 H 0.96996 * 119.99474 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.00034 * 0.02562 * 21 20 9 39 39 H 1.08004 * 119.99803 * 180.23669 * 22 21 20 40 40 H 1.07998 * 120.00024 * 179.83262 * 23 22 21 41 41 H 1.08004 * 120.00112 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.99611 * 359.97438 * 25 20 9 43 43 H 0.96696 * 114.00074 * 90.00520 * 27 26 5 44 44 H 1.08004 * 119.95385 * 0.02573 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2022 0.0000 4 6 3.5735 1.2141 0.0063 5 6 4.2805 0.0092 0.0001 6 6 5.7559 0.0147 0.0001 7 8 6.3678 -1.0359 -0.0002 8 7 6.4254 1.1845 0.0005 9 6 7.8904 1.1899 0.0066 10 1 8.2544 0.3478 0.5953 11 6 8.3930 2.4974 0.6219 12 6 7.9880 2.5584 2.0723 13 1 7.4285 1.7456 2.5113 14 6 8.3327 3.6513 2.8389 15 7 7.9797 3.7042 4.1047 16 14 9.3023 5.0561 2.0801 17 1 8.3625 6.0591 1.5178 18 1 10.1441 5.6964 3.1225 19 1 10.1708 4.5297 0.9967 20 6 8.3992 1.0718 -1.4070 21 6 7.7631 1.7509 -2.4294 22 6 8.2321 1.6457 -3.7255 23 6 9.3321 0.8550 -4.0004 24 6 9.9649 0.1717 -2.9789 25 6 9.4982 0.2800 -1.6822 26 6 3.5803 -1.2046 -0.0003 27 8 4.2560 -2.3809 -0.0002 28 6 2.1933 -1.1979 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3632 -0.8898 -0.5141 32 1 1.6500 2.1342 -0.0004 33 1 4.1061 2.1537 0.0116 34 1 5.9373 2.0227 0.0011 35 1 9.4794 2.5408 0.5460 36 1 7.9575 3.3415 0.0874 37 1 8.2219 4.4733 4.6440 38 1 6.9019 2.3664 -2.2150 39 1 7.7375 2.1793 -4.5237 40 1 9.6968 0.7707 -5.0135 41 1 10.8240 -0.4464 -3.1938 42 1 9.9926 -0.2538 -0.8840 43 1 4.4515 -2.7221 0.8832 44 1 1.6494 -2.1310 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156953096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:35 Heat of formation + Delta-G solvation = -56.212552 kcal Electronic energy + Delta-G solvation = -27026.378826 eV Core-core repulsion = 23293.418363 eV Total energy + Delta-G solvation = -3732.960463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57547 -40.45464 -39.31588 -37.89873 -36.76810 -34.75011 -33.94246 -32.30286 -31.70967 -30.99532 -30.92399 -28.47423 -26.63296 -23.79418 -23.61762 -23.56780 -23.19861 -21.74483 -21.14782 -19.26440 -19.03651 -18.48082 -17.78127 -17.31615 -16.58390 -16.38806 -16.24223 -16.13260 -15.87548 -15.48137 -15.21583 -14.98257 -14.71271 -14.39567 -14.29570 -14.25733 -14.15644 -13.93584 -13.58643 -13.39235 -13.04564 -12.99890 -12.62431 -12.50397 -12.38122 -12.36018 -11.98323 -11.83223 -11.75341 -11.69766 -11.45926 -10.82057 -10.73275 -10.09348 -9.86828 -9.78435 -9.59656 -9.53476 -8.28850 -6.33904 -0.21702 0.26249 0.47185 0.53193 1.35403 1.39284 1.49954 1.88922 2.26581 2.35215 2.71618 2.93774 3.06774 3.24409 3.71376 3.79296 3.90194 3.98962 4.00758 4.17940 4.27209 4.29736 4.34422 4.36213 4.54999 4.59197 4.70014 4.71317 4.74407 4.87937 4.96473 5.01009 5.12158 5.15148 5.19820 5.23253 5.24444 5.29664 5.51318 5.51874 5.54163 5.61784 5.63112 5.80783 5.84743 6.15389 6.24948 6.62863 6.73111 6.76155 7.29168 7.30935 8.87478 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.004668 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.952628 B = 5996.610113 C = 8013.792017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.138 4.138 4 C -0.069 4.069 5 C -0.195 4.195 6 C 0.550 3.450 7 O -0.572 6.572 8 N -0.694 5.694 9 C 0.206 3.794 10 H 0.055 0.945 11 C -0.004 4.004 12 C -0.520 4.520 13 H 0.030 0.970 14 C 0.014 3.986 15 N -0.946 5.946 16 Si 0.944 3.056 17 H -0.260 1.260 18 H -0.288 1.288 19 H -0.251 1.251 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.132 4.132 26 C 0.151 3.849 27 O -0.497 6.497 28 C -0.162 4.162 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.406 0.594 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.266 0.734 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.113 0.887 43 H 0.403 0.597 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -3.781 -14.793 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.155 4.155 4 C -0.088 4.088 5 C -0.198 4.198 6 C 0.339 3.661 7 O -0.452 6.452 8 N -0.344 5.344 9 C 0.101 3.899 10 H 0.074 0.926 11 C -0.041 4.041 12 C -0.558 4.558 13 H 0.049 0.951 14 C -0.183 4.183 15 N -0.586 5.586 16 Si 0.768 3.232 17 H -0.184 1.184 18 H -0.214 1.214 19 H -0.175 1.175 20 C -0.101 4.101 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.150 4.150 26 C 0.104 3.896 27 O -0.309 6.309 28 C -0.180 4.180 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.178 0.822 33 H 0.156 0.844 34 H 0.242 0.758 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.162 0.838 42 H 0.131 0.869 43 H 0.263 0.737 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.396 -4.358 -15.225 19.511 hybrid contribution 0.706 0.705 1.248 1.598 sum -10.690 -3.653 -13.977 17.971 Atomic orbital electron populations 1.20950 0.87788 1.04552 1.03868 1.20406 0.98267 0.91743 0.93686 1.21351 0.92923 0.99492 1.01763 1.21476 0.95578 0.96330 0.95405 1.20463 0.92254 0.95688 1.11437 1.18536 0.87943 0.83686 0.75933 1.90711 1.70470 1.32362 1.51704 1.45752 1.06771 1.08364 1.73484 1.19571 0.79542 0.99237 0.91565 0.92642 1.19728 0.97050 0.92840 0.94502 1.21164 1.35346 1.04542 0.94790 0.95141 1.25871 0.96456 1.01072 0.94928 1.70064 1.48423 1.31707 1.08452 0.85747 0.79548 0.79233 0.78677 1.18434 1.21370 1.17503 1.20391 0.96592 0.97636 0.95512 1.21095 1.00116 0.99637 0.93122 1.21447 0.97168 0.99280 0.96250 1.21487 0.96003 0.96903 1.00137 1.21394 1.00648 1.00006 0.92053 1.21186 0.96919 0.98890 0.98038 1.18774 0.90563 0.84313 0.95919 1.84667 1.76827 1.34879 1.34549 1.21498 0.91667 1.00247 1.04595 0.89464 0.89480 0.90089 0.82194 0.84365 0.75754 0.95052 0.94632 0.92486 0.85909 0.83464 0.83074 0.83832 0.86877 0.73738 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.00 71.24 0.71 -0.54 16 2 C -0.04 -0.76 5.88 -19.83 -0.12 -0.88 16 3 C -0.14 -2.80 9.67 22.24 0.22 -2.58 16 4 C -0.07 -1.85 9.54 22.52 0.21 -1.63 16 5 C -0.19 -6.51 5.89 -20.01 -0.12 -6.62 16 6 C 0.55 22.43 7.72 86.70 0.67 23.10 16 7 O -0.57 -27.03 14.82 16.94 0.25 -26.78 16 8 N -0.69 -27.21 3.97 -449.28 -1.78 -28.99 16 9 C 0.21 8.78 2.12 44.25 0.09 8.87 16 10 H 0.06 2.73 7.43 -2.39 -0.02 2.71 16 11 C 0.00 -0.16 3.56 29.85 0.11 -0.06 16 12 C -0.52 -29.07 9.39 25.60 0.24 -28.83 16 13 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 14 C 0.01 0.80 5.47 84.65 0.46 1.27 16 15 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 16 Si 0.94 42.80 27.47 68.60 1.88 44.68 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 20 C -0.10 -3.73 4.92 -19.87 -0.10 -3.83 16 21 C -0.12 -3.88 9.33 22.27 0.21 -3.68 16 22 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 23 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 24 C -0.12 -3.42 10.05 22.27 0.22 -3.20 16 25 C -0.13 -4.59 9.67 22.27 0.22 -4.38 16 26 C 0.15 4.59 6.72 22.84 0.15 4.74 16 27 O -0.50 -16.01 11.58 -68.81 -0.80 -16.80 16 28 C -0.16 -3.66 9.62 22.34 0.21 -3.45 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 32 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.14 3.39 6.40 -2.91 -0.02 3.37 16 34 H 0.41 14.23 6.63 -92.71 -0.61 13.61 16 35 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 36 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 38 H 0.12 3.62 7.71 -2.91 -0.02 3.60 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.11 3.96 8.04 -2.91 -0.02 3.94 16 43 H 0.40 10.39 9.06 -74.06 -0.67 9.72 16 44 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -77.47 373.11 3.39 -74.08 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.31 Total: 39.09 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 3.85 Total: -27.60 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.48 Total: -86.67 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.55 Total: -43.58 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -77.47 3.39 -74.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156953096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.863 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds