Wall clock time and date at job start Tue Mar 31 2020 13:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38105 * 119.95434 * 2 1 4 4 C 1.38507 * 120.38637 * 180.02562 * 3 2 1 5 5 C 1.37834 * 120.29766 * 359.73991 * 4 3 2 6 6 C 1.39667 * 119.91012 * 0.51781 * 5 4 3 7 7 C 1.47537 * 120.19009 * 179.76534 * 6 5 4 8 8 O 1.21593 * 119.99856 * 179.72080 * 7 6 5 9 9 N 1.34777 * 120.00133 * 359.44633 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27865 * 9 7 6 11 11 H 1.08999 * 109.46902 * 324.99605 * 10 9 7 12 12 C 1.53001 * 109.46711 * 204.99467 * 10 9 7 13 13 C 1.50702 * 109.47136 * 65.00105 * 12 10 9 14 14 H 1.08007 * 119.99636 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00292 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99861 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00259 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47140 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46810 * 120.00165 * 17 15 13 20 20 H 1.48494 * 109.47167 * 240.00283 * 17 15 13 21 21 C 1.50697 * 109.47346 * 84.99602 * 10 9 7 22 22 C 1.38241 * 120.00139 * 39.72705 * 21 10 9 23 23 C 1.38227 * 120.00404 * 179.81189 * 22 21 10 24 24 C 1.38241 * 119.99755 * 0.39263 * 23 22 21 25 25 C 1.38233 * 119.99819 * 359.85916 * 24 23 22 26 26 C 1.38227 * 120.00262 * 219.99704 * 21 10 9 27 27 C 1.38661 * 119.96090 * 180.02562 * 2 1 3 28 28 O 1.35657 * 120.14651 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.46776 * 269.97787 * 1 2 3 30 30 H 1.08995 * 109.47196 * 29.97635 * 1 2 3 31 31 H 1.08998 * 109.46936 * 149.98141 * 1 2 3 32 32 H 1.08002 * 119.80710 * 0.04801 * 3 2 1 33 33 H 1.07996 * 119.84716 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.04192 * 180.27513 * 5 4 3 35 35 H 0.97000 * 119.99736 * 0.27139 * 9 7 6 36 36 H 1.09000 * 109.46960 * 184.99759 * 12 10 9 37 37 H 1.09000 * 109.47563 * 304.99932 * 12 10 9 38 38 H 0.96998 * 120.00002 * 179.97438 * 16 15 13 39 39 H 1.08007 * 119.99366 * 359.97438 * 22 21 10 40 40 H 1.07999 * 120.00312 * 180.23023 * 23 22 21 41 41 H 1.08001 * 120.00062 * 179.83521 * 24 23 22 42 42 H 1.08005 * 120.00134 * 179.97438 * 25 24 23 43 43 H 1.08007 * 119.99843 * 359.97438 * 26 21 10 44 44 H 0.96705 * 113.99671 * 269.97696 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1966 0.0000 4 6 3.5817 1.2070 -0.0005 5 6 4.2860 0.0222 0.0043 6 6 3.6012 -1.1951 -0.0011 7 6 4.3489 -2.4669 -0.0012 8 8 3.7493 -3.5247 -0.0008 9 7 5.6967 -2.4563 -0.0072 10 6 6.4391 -3.7193 -0.0135 11 1 5.9001 -4.4604 0.5768 12 6 7.8273 -3.4977 0.5903 13 6 7.6892 -3.1236 2.0436 14 1 6.7091 -3.0507 2.4916 15 6 8.8138 -2.8744 2.8012 16 7 10.0072 -2.9636 2.2557 17 14 8.6425 -2.4099 4.6024 18 1 7.2044 -2.3787 4.9710 19 1 9.3465 -3.4130 5.4413 20 1 9.2407 -1.0695 4.8270 21 6 6.5804 -4.2120 -1.4306 22 6 6.8377 -3.3161 -2.4515 23 6 6.9712 -3.7684 -3.7508 24 6 6.8394 -5.1158 -4.0306 25 6 6.5769 -6.0110 -3.0105 26 6 6.4472 -5.5591 -1.7106 27 6 2.1995 -1.2013 -0.0005 28 8 1.5235 -2.3774 -0.0016 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6527 2.1296 0.0008 33 1 4.1121 2.1478 -0.0001 34 1 5.3659 0.0352 0.0084 35 1 6.1750 -1.6125 -0.0076 36 1 8.4111 -4.4143 0.5050 37 1 8.3325 -2.6940 0.0546 38 1 10.7984 -2.7879 2.7886 39 1 6.9370 -2.2629 -2.2334 40 1 7.1759 -3.0689 -4.5478 41 1 6.9410 -5.4689 -5.0462 42 1 6.4735 -7.0636 -3.2291 43 1 6.2423 -6.2586 -0.9136 44 1 1.3274 -2.7191 0.8816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156967361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:42 Heat of formation + Delta-G solvation = -57.652392 kcal Electronic energy + Delta-G solvation = -27108.968930 eV Core-core repulsion = 23375.946032 eV Total energy + Delta-G solvation = -3733.022899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58232 -40.46327 -39.32560 -37.65972 -36.72997 -34.77543 -33.94000 -32.42040 -31.72548 -30.99409 -30.48024 -27.75501 -26.84032 -24.84730 -23.81962 -23.35880 -22.72401 -21.71633 -21.04337 -19.34532 -18.73412 -18.25357 -17.72113 -17.31916 -16.70560 -16.53939 -16.33935 -16.19118 -15.74541 -15.51208 -15.17575 -14.95472 -14.55413 -14.23055 -14.21141 -14.16268 -14.00799 -13.70788 -13.46952 -13.25773 -13.11332 -12.94450 -12.77588 -12.64724 -12.49863 -12.39531 -12.16118 -11.90307 -11.68392 -11.59473 -11.33537 -10.77866 -10.58019 -10.09734 -9.80267 -9.76018 -9.54949 -9.53290 -8.21848 -6.32292 -0.17944 0.26263 0.48943 0.53616 1.36910 1.39600 1.51127 1.92357 2.27409 2.38540 2.74565 2.95328 3.12222 3.28744 3.72790 3.80249 3.97399 4.00456 4.03586 4.18354 4.29495 4.30844 4.35231 4.40969 4.61929 4.66942 4.74149 4.76344 4.77145 4.83776 4.87251 5.10099 5.17230 5.23263 5.24268 5.27739 5.39476 5.41328 5.47212 5.57761 5.58716 5.61590 5.75807 5.83511 5.88659 6.13838 6.18363 6.65820 6.78514 6.79906 7.30733 7.36839 8.89126 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.005085 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.387685 B = 5504.739314 C = 8018.391079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.129 4.129 3 C -0.074 4.074 4 C -0.128 4.128 5 C -0.084 4.084 6 C -0.183 4.183 7 C 0.549 3.451 8 O -0.571 6.571 9 N -0.692 5.692 10 C 0.201 3.799 11 H 0.058 0.942 12 C 0.038 3.962 13 C -0.529 4.529 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.956 3.044 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.273 1.273 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.133 4.133 27 C 0.142 3.858 28 O -0.492 6.492 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.405 0.595 36 H 0.005 0.995 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.118 0.882 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.113 0.887 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 8.823 -8.513 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.130 4.130 3 C -0.092 4.092 4 C -0.146 4.146 5 C -0.102 4.102 6 C -0.186 4.186 7 C 0.338 3.662 8 O -0.451 6.451 9 N -0.342 5.342 10 C 0.096 3.904 11 H 0.076 0.924 12 C 0.001 3.999 13 C -0.567 4.567 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.099 4.099 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.152 4.152 27 C 0.096 3.904 28 O -0.304 6.304 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.154 0.846 35 H 0.242 0.758 36 H 0.023 0.977 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.163 0.837 43 H 0.131 0.869 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -14.493 8.125 -9.061 18.925 hybrid contribution 0.769 -0.053 1.752 1.914 sum -13.724 8.071 -7.309 17.519 Atomic orbital electron populations 1.20714 0.88418 1.03797 1.03366 1.20529 0.98380 0.91630 1.02415 1.21568 0.94184 0.98010 0.95476 1.21465 0.94631 0.98350 1.00158 1.21495 1.00717 0.91356 0.96672 1.20474 0.94327 0.93497 1.10323 1.18565 0.82296 0.89293 0.76061 1.90715 1.69210 1.33554 1.51657 1.45785 1.05445 1.09645 1.73332 1.19742 0.93802 0.85415 0.91419 0.92424 1.19134 0.89647 0.96229 0.94883 1.21387 0.92519 1.46920 0.95881 0.93067 1.25761 0.94898 0.95297 1.02638 1.70077 0.98265 1.50132 1.37980 0.85529 0.78171 0.78119 0.79997 1.19510 1.20714 1.19830 1.20452 0.99044 0.94680 0.95774 1.21060 1.00373 0.99435 0.93273 1.21440 0.99804 0.96864 0.96164 1.21479 0.99880 0.93114 1.00209 1.21398 0.99620 1.01036 0.92032 1.21179 1.01037 0.94977 0.97996 1.18609 0.88081 0.86401 0.97357 1.84663 1.75433 1.36053 1.34269 0.89958 0.89155 0.91925 0.81562 0.81999 0.84642 0.75838 0.97669 0.96924 0.92653 0.86391 0.83561 0.82962 0.83709 0.86891 0.74070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.79 71.24 0.70 -0.94 16 2 C -0.13 -2.76 5.89 -19.79 -0.12 -2.87 16 3 C -0.07 -1.26 9.68 22.30 0.22 -1.04 16 4 C -0.13 -2.40 10.02 22.24 0.22 -2.17 16 5 C -0.08 -2.15 9.54 22.52 0.21 -1.93 16 6 C -0.18 -5.91 5.89 -20.01 -0.12 -6.03 16 7 C 0.55 22.04 7.72 86.70 0.67 22.71 16 8 O -0.57 -26.53 14.82 16.90 0.25 -26.28 16 9 N -0.69 -27.53 3.97 -449.26 -1.78 -29.31 16 10 C 0.20 8.99 2.12 44.24 0.09 9.09 16 11 H 0.06 2.87 7.44 -2.39 -0.02 2.85 16 12 C 0.04 1.97 4.50 29.85 0.13 2.11 16 13 C -0.53 -29.09 8.84 25.60 0.23 -28.86 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.71 5.46 84.65 0.46 1.17 16 16 N -0.92 -53.98 13.29 21.45 0.28 -53.70 16 17 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 C -0.10 -3.98 4.91 -19.87 -0.10 -4.07 16 22 C -0.12 -4.38 9.33 22.27 0.21 -4.18 16 23 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 24 C -0.13 -3.51 10.05 22.27 0.22 -3.28 16 25 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 26 C -0.13 -5.01 9.67 22.27 0.22 -4.80 16 27 C 0.14 4.16 6.69 22.84 0.15 4.31 16 28 O -0.49 -15.21 10.62 -68.81 -0.73 -15.94 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 31 H 0.06 1.13 7.53 -2.39 -0.02 1.11 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.14 3.27 6.40 -2.91 -0.02 3.25 16 35 H 0.40 14.65 6.63 -92.71 -0.61 14.04 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.12 3.98 7.71 -2.91 -0.02 3.95 16 40 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.11 4.22 8.04 -2.91 -0.02 4.20 16 44 H 0.40 9.84 9.06 -74.05 -0.67 9.17 16 Total: -1.00 -74.50 375.40 3.65 -70.86 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.25 Total: 36.60 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.85 Total: -27.74 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.50 Total: -83.01 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.48 Total: -42.22 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.50 3.65 -70.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156967361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.207 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds