Wall clock time and date at job start Tue Mar 31 2020 14:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38254 * 120.00319 * 0.26336 * 5 4 3 7 7 S 1.76203 * 120.00246 * 179.97438 * 6 5 4 8 8 O 1.42098 * 106.39893 * 203.54144 * 7 6 5 9 9 O 1.42101 * 106.40216 * 336.45892 * 7 6 5 10 10 N 1.65603 * 107.21747 * 90.00067 * 7 6 5 11 11 C 1.46501 * 120.00022 * 89.99834 * 10 7 6 12 12 C 1.46499 * 119.99783 * 269.99985 * 10 7 6 13 13 H 1.09000 * 109.47125 * 0.02562 * 12 10 7 14 14 C 1.53002 * 109.47218 * 120.00111 * 12 10 7 15 15 C 1.50700 * 109.47342 * 239.99927 * 12 10 7 16 16 H 1.08008 * 119.99133 * 0.02562 * 15 12 10 17 17 C 1.37874 * 120.00409 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99853 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00080 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47327 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47323 * 120.00385 * 19 17 15 22 22 H 1.48501 * 109.47595 * 240.00344 * 19 17 15 23 23 C 1.38216 * 119.99725 * 0.02562 * 6 5 4 24 24 C 1.38209 * 120.00297 * 85.25502 * 3 2 1 25 25 C 1.50700 * 120.00250 * 0.04495 * 24 3 2 26 26 C 1.52994 * 109.47289 * 85.23265 * 25 24 3 27 27 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 28 28 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 30 30 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 31 31 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 32 32 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99941 * 180.27784 * 5 4 3 34 34 H 1.09003 * 109.46768 * 90.00235 * 11 10 7 35 35 H 1.08998 * 109.46981 * 209.99974 * 11 10 7 36 36 H 1.08999 * 109.46838 * 330.00187 * 11 10 7 37 37 H 1.08996 * 109.47155 * 180.02562 * 14 12 10 38 38 H 1.08998 * 109.46891 * 300.00099 * 14 12 10 39 39 H 1.09002 * 109.47291 * 59.99500 * 14 12 10 40 40 H 0.96997 * 119.99890 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.99716 * 179.97438 * 23 6 5 42 42 H 1.09002 * 109.47082 * 205.23660 * 25 24 3 43 43 H 1.09004 * 109.46635 * 325.23485 * 25 24 3 44 44 H 1.09002 * 109.47381 * 300.00212 * 26 25 24 45 45 H 1.08992 * 109.47454 * 60.00284 * 26 25 24 46 46 H 1.09007 * 109.46960 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9481 4.0294 -0.0007 7 16 3.5291 5.6929 -0.0014 8 8 4.0730 5.9284 1.2901 9 8 4.2740 5.8573 -1.2002 10 7 2.2028 6.6753 -0.1365 11 6 1.5140 7.1459 1.0678 12 6 1.7182 7.0737 -1.4604 13 1 2.3519 6.6295 -2.2281 14 6 0.2789 6.5881 -1.6441 15 6 1.7608 8.5753 -1.5801 16 1 2.1140 9.1730 -0.7527 17 6 1.3500 9.1860 -2.7460 18 7 0.9204 8.4580 -3.7535 19 14 1.4022 11.0473 -2.8940 20 1 1.9209 11.6300 -1.6304 21 1 2.2944 11.4297 -4.0178 22 1 0.0333 11.5621 -3.1516 23 6 2.6249 3.4107 1.1922 24 6 2.1693 2.1054 1.1928 25 6 1.8174 1.4307 2.4936 26 6 3.0193 0.6263 2.9924 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2578 1.5015 -2.1247 33 1 3.0691 3.8260 -2.1255 34 1 1.9530 8.0895 1.3920 35 1 0.4569 7.2938 0.8474 36 1 1.6199 6.4047 1.8599 37 1 -0.0814 6.8841 -2.6293 38 1 0.2481 5.5020 -1.5576 39 1 -0.3550 7.0319 -0.8764 40 1 0.6310 8.8876 -4.5736 41 1 2.7281 3.9471 2.1240 42 1 1.5525 2.1854 3.2342 43 1 0.9713 0.7613 2.3383 44 1 3.2842 -0.1284 2.2518 45 1 3.8654 1.2956 3.1477 46 1 2.7645 0.1379 3.9331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162462166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:47 Heat of formation + Delta-G solvation = -65.268424 kcal Electronic energy + Delta-G solvation = -26664.876363 eV Core-core repulsion = 23066.967160 eV Total energy + Delta-G solvation = -3597.909203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.83415 -36.67137 -36.16217 -35.22697 -34.85927 -33.61615 -32.57565 -30.01915 -29.22991 -29.07534 -25.58869 -25.13976 -24.69533 -23.72797 -21.73800 -21.08625 -20.50311 -18.21369 -17.25654 -16.82222 -16.41721 -16.19440 -15.58226 -15.17137 -14.56319 -14.51405 -14.06439 -13.87389 -13.75370 -13.51951 -13.39050 -13.16493 -12.90890 -12.79097 -12.54052 -12.14532 -11.98620 -11.85317 -11.71782 -11.50845 -11.45594 -11.41115 -11.34215 -11.20634 -11.17196 -10.96838 -10.79398 -10.75339 -10.49842 -10.29255 -10.21573 -9.97236 -9.23895 -9.01735 -8.72987 -8.45058 -7.94673 -6.06625 -4.12907 0.83088 1.12695 1.37105 3.28856 3.36964 3.39136 3.42488 3.81878 4.35844 4.42375 4.49315 4.59048 4.74510 4.76967 4.96473 5.08598 5.10380 5.19766 5.24892 5.25106 5.37400 5.42132 5.52727 5.57929 5.60874 5.63423 5.69033 5.79079 5.94216 5.94914 6.05373 6.11607 6.15902 6.25957 6.30117 6.36905 6.51754 6.63076 6.78275 6.81612 6.93886 7.02483 7.44584 7.64062 7.79220 8.04478 8.27882 8.89614 9.52815 10.99179 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.003821 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.251678 B = 7325.880890 C = 7905.732008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.034 4.034 4 C -0.138 4.138 5 C -0.015 4.015 6 C -0.671 4.671 7 S 2.682 3.318 8 O -0.976 6.976 9 O -0.953 6.953 10 N -0.980 5.980 11 C 0.108 3.892 12 C 0.266 3.734 13 H 0.061 0.939 14 C -0.149 4.149 15 C -0.518 4.518 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.018 4.018 24 C -0.107 4.107 25 C -0.087 4.087 26 C -0.149 4.149 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.010 0.990 39 H 0.034 0.966 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 -16.840 9.495 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.035 4.035 4 C -0.157 4.157 5 C -0.035 4.035 6 C -0.756 4.756 7 S 2.772 3.228 8 O -0.966 6.966 9 O -0.944 6.944 10 N -0.820 5.820 11 C -0.038 4.038 12 C 0.164 3.836 13 H 0.078 0.922 14 C -0.209 4.209 15 C -0.557 4.557 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.038 4.038 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.207 4.207 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.030 0.970 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.153 0.847 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.730 -16.577 9.381 19.061 hybrid contribution -0.595 0.497 -0.302 0.832 sum -1.325 -16.081 9.079 18.514 Atomic orbital electron populations 1.21757 0.94315 1.01794 1.02657 1.20697 0.96562 0.92562 1.03201 1.19977 0.94981 0.95704 0.92800 1.21132 1.01468 0.95427 0.97668 1.20965 0.91599 0.93956 0.96936 1.31414 1.18093 1.26867 0.99179 1.02223 0.74067 0.73236 0.73273 1.93501 1.76859 1.84926 1.41308 1.93569 1.68344 1.85321 1.47119 1.57412 1.49307 1.61060 1.14232 1.21189 0.98798 0.98788 0.85012 1.18798 0.92317 0.95861 0.76659 0.92157 1.22132 0.99102 0.95807 1.03835 1.21367 1.43269 0.90888 1.00223 0.91785 1.24903 0.94958 0.98519 0.95503 1.69868 1.43550 1.35053 1.04447 0.86437 0.77576 0.85151 0.78230 1.19695 1.20895 1.21023 1.20754 0.92388 0.94065 0.96557 1.19779 1.01749 0.94448 0.94844 1.20585 0.98703 0.99410 0.93684 1.21787 0.98076 1.00069 1.00719 0.92212 0.92254 0.92294 0.90806 0.90387 0.85366 0.84140 0.92963 0.90835 0.93230 0.88796 0.97048 0.94703 0.92764 0.84722 0.90825 0.90603 0.92552 0.92289 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.72 37.16 0.36 -0.85 16 2 C -0.09 -0.82 5.38 -27.89 -0.15 -0.97 16 3 C -0.03 -0.41 5.13 -104.63 -0.54 -0.95 16 4 C -0.14 -1.85 9.68 -39.58 -0.38 -2.23 16 5 C -0.02 -0.25 9.52 -39.58 -0.38 -0.63 16 6 C -0.67 -11.42 5.97 -39.58 -0.24 -11.66 16 7 S 2.68 54.17 5.64 -107.50 -0.61 53.57 16 8 O -0.98 -20.31 16.35 -57.17 -0.94 -21.25 16 9 O -0.95 -22.27 15.85 -57.17 -0.91 -23.17 16 10 N -0.98 -20.56 3.06 -115.85 -0.35 -20.91 16 11 C 0.11 1.94 9.53 59.85 0.57 2.51 16 12 C 0.27 6.50 2.62 -69.08 -0.18 6.32 16 13 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 14 C -0.15 -3.39 8.95 37.16 0.33 -3.06 16 15 C -0.52 -13.89 8.37 -34.44 -0.29 -14.18 16 16 H 0.06 1.71 7.65 -52.48 -0.40 1.31 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 19 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.02 -0.27 9.16 -39.58 -0.36 -0.64 16 24 C -0.11 -1.35 5.13 -104.63 -0.54 -1.89 16 25 C -0.09 -0.82 5.38 -27.89 -0.15 -0.97 16 26 C -0.15 -1.26 9.72 37.15 0.36 -0.90 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 6.83 -51.93 -0.35 0.14 16 30 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.08 0.60 5.63 -51.93 -0.29 0.31 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.14 2.29 7.62 -52.49 -0.40 1.89 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.27 6.43 -51.93 -0.33 0.93 16 36 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 37 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 41 H 0.13 1.85 7.62 -52.49 -0.40 1.45 16 42 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 43 H 0.08 0.62 5.64 -51.93 -0.29 0.33 16 44 H 0.06 0.46 6.83 -51.93 -0.35 0.10 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -31.56 375.67 -10.39 -41.95 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.18 Total: 0.55 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -1.67 Total: -28.47 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.27 Total: -44.88 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.84 Total: -44.42 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.61 Total: 53.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.56 -10.39 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162462166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.317 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds