Wall clock time and date at job start Tue Mar 31 2020 13:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38259 * 119.99680 * 2 1 4 4 C 1.38217 * 119.99437 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00242 * 0.28371 * 4 3 2 6 6 C 1.38209 * 119.99951 * 359.49670 * 5 4 3 7 7 S 1.76200 * 119.99803 * 180.25980 * 6 5 4 8 8 O 1.42095 * 106.40453 * 31.83052 * 7 6 5 9 9 O 1.42108 * 106.40179 * 164.75279 * 7 6 5 10 10 N 1.65606 * 107.21968 * 278.28899 * 7 6 5 11 11 C 1.46495 * 120.00013 * 80.20188 * 10 7 6 12 12 C 1.50701 * 109.46670 * 93.09100 * 11 10 7 13 13 H 1.08001 * 120.00304 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99884 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99770 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00009 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47164 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46859 * 120.00488 * 16 14 12 19 19 H 1.48502 * 109.46884 * 240.00313 * 16 14 12 20 20 C 1.46503 * 119.99614 * 260.20739 * 10 7 6 21 21 C 1.53005 * 109.47245 * 100.56287 * 20 10 7 22 22 C 1.52989 * 109.47290 * 64.50425 * 21 20 10 23 23 C 1.52994 * 109.46937 * 184.50788 * 21 20 10 24 24 C 1.52998 * 109.46541 * 304.50132 * 21 20 10 25 25 C 1.38212 * 120.00315 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46855 * 90.00511 * 1 2 3 27 27 H 1.09006 * 109.46931 * 210.00398 * 1 2 3 28 28 H 1.08995 * 109.47218 * 330.00152 * 1 2 3 29 29 H 1.07996 * 120.00397 * 359.97438 * 3 2 1 30 30 H 1.08001 * 119.99388 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.99807 * 179.72435 * 5 4 3 32 32 H 1.09001 * 109.47378 * 213.08969 * 11 10 7 33 33 H 1.08995 * 109.46974 * 333.09403 * 11 10 7 34 34 H 0.97002 * 119.99877 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46553 * 220.55735 * 20 10 7 36 36 H 1.08994 * 109.47504 * 340.55284 * 20 10 7 37 37 H 1.09002 * 109.47523 * 49.32876 * 22 21 20 38 38 H 1.08997 * 109.47564 * 169.33115 * 22 21 20 39 39 H 1.09001 * 109.47649 * 289.32739 * 22 21 20 40 40 H 1.09001 * 109.47561 * 59.99328 * 23 21 20 41 41 H 1.09001 * 109.47156 * 179.97438 * 23 21 20 42 42 H 1.09005 * 109.47152 * 299.99357 * 23 21 20 43 43 H 1.09004 * 109.47252 * 70.99854 * 24 21 20 44 44 H 1.09005 * 109.46938 * 190.99122 * 24 21 20 45 45 H 1.08992 * 109.47771 * 310.99300 * 24 21 20 46 46 H 1.08006 * 119.99657 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 -0.0049 6 6 3.5807 -1.1969 -0.0003 7 16 4.4617 -2.7228 -0.0002 8 8 5.6677 -2.4898 0.7143 9 8 3.5246 -3.7273 0.3633 10 7 4.8992 -3.0363 -1.5664 11 6 6.0693 -2.3730 -2.1469 12 6 7.2829 -3.2484 -1.9683 13 1 7.1917 -4.2034 -1.4724 14 6 8.5097 -2.8304 -2.4389 15 7 8.6207 -1.6675 -3.0432 16 14 10.0142 -3.9151 -2.2170 17 1 9.6255 -5.1622 -1.5108 18 1 10.5795 -4.2556 -3.5472 19 1 11.0336 -3.1898 -1.4169 20 6 4.1160 -3.9770 -2.3713 21 6 3.1816 -3.1988 -3.2999 22 6 4.0122 -2.3896 -4.2979 23 6 2.2848 -4.1787 -4.0590 24 6 2.3134 -2.2500 -2.4712 25 6 2.1981 -1.1969 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6583 2.1327 -0.0004 30 1 4.1203 2.1327 0.0001 31 1 5.3516 0.0001 -0.0089 32 1 5.8991 -2.2002 -3.2096 33 1 6.2323 -1.4192 -1.6452 34 1 9.4838 -1.3733 -3.3740 35 1 4.7892 -4.5937 -2.9669 36 1 3.5259 -4.6148 -1.7132 37 1 4.7630 -3.0352 -4.7536 38 1 3.3594 -1.9883 -5.0730 39 1 4.5062 -1.5686 -3.7782 40 1 1.6930 -4.7553 -3.3480 41 1 1.6188 -3.6243 -4.7202 42 1 2.9033 -4.8548 -4.6494 43 1 2.9286 -1.4359 -2.0878 44 1 1.5206 -1.8418 -3.0982 45 1 1.8723 -2.7959 -1.6373 46 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171638260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:45 Heat of formation + Delta-G solvation = -52.341015 kcal Electronic energy + Delta-G solvation = -27807.786671 eV Core-core repulsion = 24210.438042 eV Total energy + Delta-G solvation = -3597.348629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.37409 -37.98872 -36.57760 -35.15120 -34.04614 -32.84555 -32.16889 -31.30788 -27.83434 -27.18953 -26.79631 -26.63756 -24.92673 -23.07748 -22.18059 -21.66368 -18.86385 -18.08802 -17.32550 -16.77411 -16.36393 -15.76856 -15.71517 -15.10198 -14.60651 -14.35622 -14.26251 -14.15873 -13.71927 -13.64345 -13.13575 -12.87687 -12.54313 -12.39193 -12.37792 -12.24822 -12.07054 -11.87929 -11.73815 -11.45232 -11.38411 -11.24347 -11.17328 -11.10845 -11.04889 -10.88600 -10.77652 -10.53719 -10.36087 -10.19563 -10.03385 -9.84521 -9.60550 -9.07280 -8.64805 -8.40123 -7.95108 -6.04313 -4.06449 0.87623 1.16685 1.40051 3.32700 3.40646 3.44969 3.48571 3.83750 4.34979 4.47458 4.66659 4.81647 5.00829 5.08419 5.14639 5.17094 5.21410 5.25687 5.30719 5.38704 5.48511 5.62413 5.69522 5.71595 5.82786 5.86252 5.91997 5.96771 6.02763 6.08773 6.19610 6.24923 6.28189 6.31958 6.37122 6.41746 6.46342 6.49921 6.60917 6.68681 6.87479 6.95543 7.26633 7.41850 7.63793 7.94239 8.23665 8.95968 9.57964 11.04070 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.005397 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.166895 B = 5186.519046 C = 5909.147981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C -0.072 4.072 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.670 4.670 7 S 2.681 3.319 8 O -0.943 6.943 9 O -0.980 6.980 10 N -0.975 5.975 11 C 0.243 3.757 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.283 1.283 20 C 0.131 3.869 21 C -0.087 4.087 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.165 4.165 25 C -0.015 4.015 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.032 3.746 0.822 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.036 4.036 6 C -0.754 4.754 7 S 2.770 3.230 8 O -0.933 6.933 9 O -0.970 6.970 10 N -0.814 5.814 11 C 0.122 3.878 12 C -0.561 4.561 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.537 5.537 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.209 1.209 20 C 0.005 3.995 21 C -0.089 4.089 22 C -0.198 4.198 23 C -0.195 4.195 24 C -0.221 4.221 25 C -0.034 4.034 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.713 3.373 1.464 16.137 hybrid contribution 0.680 0.319 -0.311 0.813 sum -15.033 3.693 1.153 15.523 Atomic orbital electron populations 1.20767 0.90910 1.02770 1.02387 1.19943 0.96187 0.93188 1.02667 1.21247 0.94388 0.97469 0.95898 1.21250 0.94321 0.98310 1.02076 1.21025 1.00629 0.91080 0.90899 1.31400 1.06238 1.21614 1.16146 1.02317 0.73336 0.73565 0.73762 1.93609 1.43778 1.85627 1.70278 1.93473 1.64813 1.56236 1.82502 1.57325 1.38239 1.55062 1.30776 1.19424 0.80255 0.91992 0.96158 1.21544 0.92686 1.04705 1.37143 0.92052 1.24893 0.98793 0.95222 0.95069 1.69922 1.24921 1.19643 1.39253 0.86496 0.82831 0.80815 0.77648 1.19635 1.21108 1.20908 1.21363 0.93298 0.90895 0.93980 1.21006 0.95584 0.96093 0.96187 1.22054 0.99075 1.00734 0.97892 1.21812 0.99045 0.98895 0.99757 1.22582 0.99779 0.99802 0.99987 1.20865 0.92083 0.98541 0.91925 0.91151 0.91395 0.91649 0.85857 0.85334 0.84150 0.92432 0.95209 0.92853 0.89650 0.90065 0.92075 0.94059 0.91116 0.92779 0.92956 0.92508 0.91385 0.92823 0.92369 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.12 -1.45 5.88 -104.62 -0.62 -2.06 16 3 C -0.07 -0.84 9.70 -39.58 -0.38 -1.23 16 4 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 5 C -0.02 -0.28 9.52 -39.59 -0.38 -0.66 16 6 C -0.67 -11.26 4.04 -39.59 -0.16 -11.42 16 7 S 2.68 53.90 5.12 -107.50 -0.55 53.35 16 8 O -0.94 -22.62 16.89 -57.17 -0.97 -23.59 16 9 O -0.98 -19.79 15.47 -57.17 -0.88 -20.68 16 10 N -0.98 -19.62 2.18 -115.66 -0.25 -19.87 16 11 C 0.24 5.76 4.39 -5.20 -0.02 5.74 16 12 C -0.52 -14.17 9.39 -34.44 -0.32 -14.50 16 13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.13 2.25 4.75 -4.04 -0.02 2.23 16 21 C -0.09 -1.26 0.85 -154.52 -0.13 -1.39 16 22 C -0.14 -2.20 7.00 37.15 0.26 -1.94 16 23 C -0.14 -1.65 8.43 37.15 0.31 -1.33 16 24 C -0.16 -2.28 5.80 37.16 0.22 -2.06 16 25 C -0.02 -0.22 5.90 -39.59 -0.23 -0.45 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.14 2.41 7.59 -52.49 -0.40 2.01 16 32 H 0.06 1.35 4.62 -51.93 -0.24 1.11 16 33 H 0.03 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 36 H 0.08 1.33 6.75 -51.93 -0.35 0.98 16 37 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 38 H 0.04 0.56 8.11 -51.93 -0.42 0.14 16 39 H 0.07 1.24 5.84 -51.93 -0.30 0.94 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.02 4.64 -51.93 -0.24 0.78 16 44 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.06 0.78 5.95 -51.93 -0.31 0.47 16 46 H 0.14 1.88 6.01 -52.48 -0.32 1.56 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -31.65 367.26 -10.17 -41.81 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.15 Total: 1.87 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -1.61 Total: -30.35 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.48 Total: -44.57 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.85 Total: -44.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.55 Total: 53.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.65 -10.17 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171638260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.528 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds