Wall clock time and date at job start Tue Mar 31 2020 13:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38259 * 119.99680 * 2 1 4 4 C 1.38217 * 119.99437 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00242 * 0.28371 * 4 3 2 6 6 C 1.38209 * 119.99951 * 359.49670 * 5 4 3 7 7 S 1.76200 * 119.99803 * 180.25980 * 6 5 4 8 8 O 1.42095 * 106.40453 * 31.83052 * 7 6 5 9 9 O 1.42108 * 106.40179 * 164.75279 * 7 6 5 10 10 N 1.65606 * 107.21968 * 278.28899 * 7 6 5 11 11 C 1.46495 * 120.00013 * 80.20188 * 10 7 6 12 12 C 1.50701 * 109.46670 * 93.09100 * 11 10 7 13 13 H 1.08001 * 120.00304 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99884 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99770 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00009 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47164 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46859 * 120.00488 * 16 14 12 19 19 H 1.48502 * 109.46884 * 240.00313 * 16 14 12 20 20 C 1.46503 * 119.99614 * 260.20739 * 10 7 6 21 21 C 1.53005 * 109.47245 * 100.56287 * 20 10 7 22 22 C 1.52989 * 109.47290 * 64.50425 * 21 20 10 23 23 C 1.52994 * 109.46937 * 184.50788 * 21 20 10 24 24 C 1.52998 * 109.46541 * 304.50132 * 21 20 10 25 25 C 1.38212 * 120.00315 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46855 * 90.00511 * 1 2 3 27 27 H 1.09006 * 109.46931 * 210.00398 * 1 2 3 28 28 H 1.08995 * 109.47218 * 330.00152 * 1 2 3 29 29 H 1.07996 * 120.00397 * 359.97438 * 3 2 1 30 30 H 1.08001 * 119.99388 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.99807 * 179.72435 * 5 4 3 32 32 H 1.09001 * 109.47378 * 213.08969 * 11 10 7 33 33 H 1.08995 * 109.46974 * 333.09403 * 11 10 7 34 34 H 0.97002 * 119.99877 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46553 * 220.55735 * 20 10 7 36 36 H 1.08994 * 109.47504 * 340.55284 * 20 10 7 37 37 H 1.09002 * 109.47523 * 49.32876 * 22 21 20 38 38 H 1.08997 * 109.47564 * 169.33115 * 22 21 20 39 39 H 1.09001 * 109.47649 * 289.32739 * 22 21 20 40 40 H 1.09001 * 109.47561 * 59.99328 * 23 21 20 41 41 H 1.09001 * 109.47156 * 179.97438 * 23 21 20 42 42 H 1.09005 * 109.47152 * 299.99357 * 23 21 20 43 43 H 1.09004 * 109.47252 * 70.99854 * 24 21 20 44 44 H 1.09005 * 109.46938 * 190.99122 * 24 21 20 45 45 H 1.08992 * 109.47771 * 310.99300 * 24 21 20 46 46 H 1.08006 * 119.99657 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 -0.0049 6 6 3.5807 -1.1969 -0.0003 7 16 4.4617 -2.7228 -0.0002 8 8 5.6677 -2.4898 0.7143 9 8 3.5246 -3.7273 0.3633 10 7 4.8992 -3.0363 -1.5664 11 6 6.0693 -2.3730 -2.1469 12 6 7.2829 -3.2484 -1.9683 13 1 7.1917 -4.2034 -1.4724 14 6 8.5097 -2.8304 -2.4389 15 7 8.6207 -1.6675 -3.0432 16 14 10.0142 -3.9151 -2.2170 17 1 9.6255 -5.1622 -1.5108 18 1 10.5795 -4.2556 -3.5472 19 1 11.0336 -3.1898 -1.4169 20 6 4.1160 -3.9770 -2.3713 21 6 3.1816 -3.1988 -3.2999 22 6 4.0122 -2.3896 -4.2979 23 6 2.2848 -4.1787 -4.0590 24 6 2.3134 -2.2500 -2.4712 25 6 2.1981 -1.1969 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6583 2.1327 -0.0004 30 1 4.1203 2.1327 0.0001 31 1 5.3516 0.0001 -0.0089 32 1 5.8991 -2.2002 -3.2096 33 1 6.2323 -1.4192 -1.6452 34 1 9.4838 -1.3733 -3.3740 35 1 4.7892 -4.5937 -2.9669 36 1 3.5259 -4.6148 -1.7132 37 1 4.7630 -3.0352 -4.7536 38 1 3.3594 -1.9883 -5.0730 39 1 4.5062 -1.5686 -3.7782 40 1 1.6930 -4.7553 -3.3480 41 1 1.6188 -3.6243 -4.7202 42 1 2.9033 -4.8548 -4.6494 43 1 2.9286 -1.4359 -2.0878 44 1 1.5206 -1.8418 -3.0982 45 1 1.8723 -2.7959 -1.6373 46 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171638260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:45 Heat of formation + Delta-G solvation = -71.338505 kcal Electronic energy + Delta-G solvation = -27808.610464 eV Core-core repulsion = 24210.438042 eV Total energy + Delta-G solvation = -3598.172422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45848 -39.32336 -38.25341 -36.85503 -35.72534 -34.09512 -33.81537 -32.40993 -29.59056 -28.18710 -28.01298 -27.66838 -26.55467 -24.28802 -23.97688 -22.73567 -20.19020 -19.50886 -18.90523 -18.34681 -18.19476 -17.26150 -16.93907 -16.58155 -16.13203 -15.77404 -15.53151 -15.37438 -14.97422 -14.55575 -14.51574 -14.17154 -14.13145 -14.00212 -13.39802 -13.29250 -13.20450 -13.12795 -13.08143 -13.01717 -12.95683 -12.87130 -12.72292 -12.53817 -12.40090 -12.26559 -12.24083 -12.09598 -11.84984 -11.64487 -11.50177 -11.34043 -11.32053 -10.50944 -10.17884 -9.69574 -9.62134 -8.16749 -6.25854 -0.53274 -0.12689 0.32922 1.37497 1.40460 1.51720 2.08373 2.42778 2.57063 2.84229 3.14005 3.37391 3.83151 3.88489 3.91453 3.95769 4.04552 4.09831 4.31590 4.32522 4.38257 4.55211 4.66277 4.75270 4.81172 4.85554 4.89634 4.93629 4.97539 5.00276 5.01830 5.12893 5.14718 5.17508 5.26151 5.26899 5.27521 5.33329 5.40667 5.48149 5.51912 5.60509 5.62778 5.75365 5.93104 5.99630 6.17677 6.81244 7.41173 8.90348 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.005397 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.166895 B = 5186.519046 C = 5909.147981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.060 4.060 4 C -0.140 4.140 5 C -0.046 4.046 6 C -0.673 4.673 7 S 2.682 3.318 8 O -0.997 6.997 9 O -0.987 6.987 10 N -0.979 5.979 11 C 0.260 3.740 12 C -0.540 4.540 13 H 0.047 0.953 14 C 0.016 3.984 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.273 1.273 18 H -0.270 1.270 19 H -0.281 1.281 20 C 0.122 3.878 21 C -0.082 4.082 22 C -0.136 4.136 23 C -0.132 4.132 24 C -0.163 4.163 25 C -0.023 4.023 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.152 0.848 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.009 0.991 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.121 4.850 0.221 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.111 4.111 3 C -0.078 4.078 4 C -0.159 4.159 5 C -0.066 4.066 6 C -0.763 4.763 7 S 2.777 3.223 8 O -0.987 6.987 9 O -0.978 6.978 10 N -0.817 5.817 11 C 0.137 3.863 12 C -0.580 4.580 13 H 0.066 0.934 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.775 3.225 17 H -0.198 1.198 18 H -0.196 1.196 19 H -0.207 1.207 20 C -0.003 4.003 21 C -0.084 4.084 22 C -0.193 4.193 23 C -0.190 4.190 24 C -0.220 4.220 25 C -0.042 4.042 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.183 0.817 30 H 0.169 0.831 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.786 4.409 0.854 19.315 hybrid contribution 1.527 0.062 -0.089 1.531 sum -17.259 4.471 0.765 17.845 Atomic orbital electron populations 1.20878 0.87902 1.04245 1.03785 1.20387 0.98223 0.92210 1.00323 1.21745 0.93617 0.99124 0.93290 1.21537 0.95498 0.97779 1.01040 1.20973 0.99736 0.92531 0.93357 1.30633 1.07121 1.19155 1.19377 1.01774 0.72800 0.74527 0.73220 1.93535 1.46748 1.86705 1.71703 1.93442 1.64325 1.57464 1.82561 1.57136 1.38051 1.55805 1.30696 1.19013 0.80592 0.90685 0.95966 1.21870 0.94499 1.04690 1.36928 0.93440 1.25612 1.01342 0.96473 0.94924 1.70000 1.25692 1.20740 1.39881 0.85644 0.79656 0.79119 0.78124 1.19764 1.19561 1.20678 1.21608 0.93434 0.90947 0.94309 1.20964 0.95368 0.96483 0.95595 1.21969 0.99140 0.99727 0.98463 1.21780 0.98803 0.98468 0.99957 1.22558 0.99929 0.99172 1.00329 1.21033 0.90829 1.00160 0.92214 0.89608 0.90838 0.89413 0.81661 0.83055 0.86810 0.92277 0.97342 0.92535 0.90785 0.89340 0.93776 0.91634 0.93671 0.91728 0.90991 0.92462 0.92890 0.90405 0.92009 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.72 16 2 C -0.11 -2.30 5.88 -19.87 -0.12 -2.41 16 3 C -0.06 -1.17 9.70 22.27 0.22 -0.96 16 4 C -0.14 -3.49 10.05 22.27 0.22 -3.26 16 5 C -0.05 -1.56 9.52 22.27 0.21 -1.35 16 6 C -0.67 -23.10 4.04 22.27 0.09 -23.01 16 7 S 2.68 113.62 5.12 -56.49 -0.29 113.33 16 8 O -1.00 -51.49 16.89 -128.00 -2.16 -53.66 16 9 O -0.99 -41.03 15.47 -128.00 -1.98 -43.01 16 10 N -0.98 -41.49 2.18 -519.85 -1.13 -42.63 16 11 C 0.26 13.11 4.39 85.63 0.38 13.49 16 12 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 13 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 14 C 0.02 0.89 5.46 84.66 0.46 1.35 16 15 N -0.92 -53.86 13.29 21.45 0.28 -53.57 16 16 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 17 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 20 C 0.12 4.32 4.75 86.38 0.41 4.73 16 21 C -0.08 -2.33 0.85 -52.19 -0.04 -2.38 16 22 C -0.14 -4.24 7.00 71.98 0.50 -3.74 16 23 C -0.13 -2.87 8.43 71.98 0.61 -2.26 16 24 C -0.16 -4.23 5.80 71.98 0.42 -3.81 16 25 C -0.02 -0.63 5.90 22.27 0.13 -0.50 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.90 8.09 -2.38 -0.02 0.89 16 28 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 30 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.11 4.33 7.59 -2.91 -0.02 4.31 16 32 H 0.06 2.95 4.62 -2.39 -0.01 2.93 16 33 H 0.01 0.47 7.70 -2.39 -0.02 0.45 16 34 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.07 2.72 8.11 -2.39 -0.02 2.70 16 36 H 0.09 2.95 6.75 -2.39 -0.02 2.94 16 37 H 0.04 1.49 7.88 -2.39 -0.02 1.47 16 38 H 0.06 1.69 8.11 -2.39 -0.02 1.67 16 39 H 0.04 1.63 5.84 -2.39 -0.01 1.61 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.05 1.56 4.64 -2.38 -0.01 1.55 16 44 H 0.08 1.62 8.10 -2.38 -0.02 1.60 16 45 H 0.06 1.55 5.95 -2.39 -0.01 1.53 16 46 H 0.15 3.70 6.01 -2.91 -0.02 3.68 16 Total: -1.00 -71.91 367.26 2.15 -69.76 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.96 Total: 17.81 kcal Atomic # 6 Polarization: -59.89 SS G_CDS: 4.44 Total: -55.45 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -0.85 Total: -96.20 kcal Atomic # 8 Polarization: -92.52 SS G_CDS: -4.14 Total: -96.66 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 113.62 SS G_CDS: -0.29 Total: 113.33 kcal Total: -71.91 2.15 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171638260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.580 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds