Wall clock time and date at job start Tue Mar 31 2020 13:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 S 1.76205 * 120.00126 * 180.26088 * 6 5 4 8 8 O 1.42105 * 106.40035 * 23.75208 * 7 6 5 9 9 O 1.42097 * 106.40122 * 156.67596 * 7 6 5 10 10 N 1.65602 * 107.21590 * 270.21445 * 7 6 5 11 11 C 1.46502 * 119.99905 * 89.99685 * 10 7 6 12 12 C 1.50703 * 109.46837 * 95.00419 * 11 10 7 13 13 H 1.07999 * 120.00158 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99892 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99606 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00026 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47259 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47165 * 119.99399 * 16 14 12 19 19 H 1.48500 * 109.47135 * 239.99697 * 16 14 12 20 20 C 1.46501 * 119.99673 * 269.99951 * 10 7 6 21 21 C 1.53001 * 109.47271 * 95.00183 * 20 10 7 22 22 C 1.52994 * 109.47242 * 179.97438 * 21 20 10 23 23 C 1.53008 * 109.47005 * 64.99872 * 22 21 20 24 24 C 1.52995 * 109.47351 * 184.99917 * 22 21 20 25 25 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 27 27 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 28 28 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 29 29 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 31 31 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 32 32 H 1.09000 * 109.47031 * 215.00064 * 11 10 7 33 33 H 1.08994 * 109.47122 * 335.00232 * 11 10 7 34 34 H 0.97006 * 119.99682 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46538 * 214.99588 * 20 10 7 36 36 H 1.08993 * 109.47427 * 334.99841 * 20 10 7 37 37 H 1.08995 * 109.46973 * 299.99966 * 21 20 10 38 38 H 1.09007 * 109.47305 * 59.99498 * 21 20 10 39 39 H 1.08998 * 109.47383 * 305.00406 * 22 21 20 40 40 H 1.08998 * 109.46614 * 60.00063 * 23 22 21 41 41 H 1.09000 * 109.47378 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47236 * 300.00382 * 23 22 21 43 43 H 1.09001 * 109.47297 * 60.00032 * 24 22 21 44 44 H 1.09000 * 109.47311 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.46797 * 299.99965 * 24 22 21 46 46 H 1.08001 * 119.99700 * 359.96970 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 16 4.4616 -2.7230 -0.0006 8 8 5.7446 -2.4457 0.5439 9 8 3.5799 -3.6953 0.5438 10 7 4.7067 -3.1474 -1.5824 11 6 5.9139 -2.7008 -2.2820 12 6 6.9660 -3.7770 -2.2055 13 1 6.7566 -4.7011 -1.6872 14 6 8.1964 -3.5815 -2.7963 15 7 8.4515 -2.4561 -3.4269 16 14 9.5007 -4.9152 -2.7008 17 1 8.9684 -6.0748 -1.9409 18 1 9.8672 -5.3483 -4.0732 19 1 10.7037 -4.3827 -2.0119 20 6 3.7163 -3.9695 -2.2821 21 6 2.7558 -3.0634 -3.0550 22 6 1.7219 -3.9220 -3.7862 23 6 0.8520 -4.6547 -2.7628 24 6 0.8393 -3.0260 -4.6574 25 6 2.1981 -1.1970 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0001 -0.0091 32 1 5.6752 -2.4997 -3.3263 33 1 6.2898 -1.7912 -1.8136 34 1 9.3170 -2.3187 -3.8429 35 1 4.2247 -4.6374 -2.9776 36 1 3.1555 -4.5587 -1.5567 37 1 2.2476 -2.3955 -2.3596 38 1 3.3167 -2.4741 -3.7805 39 1 2.2338 -4.6500 -4.4155 40 1 0.3401 -3.9267 -2.1336 41 1 0.1150 -5.2661 -3.2837 42 1 1.4807 -5.2930 -2.1421 43 1 1.4591 -2.5040 -5.3865 44 1 0.1025 -3.6376 -5.1780 45 1 0.3274 -2.2980 -4.0281 46 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171709252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:10 Heat of formation + Delta-G solvation = -72.320985 kcal Electronic energy + Delta-G solvation = -26903.483022 eV Core-core repulsion = 23305.267997 eV Total energy + Delta-G solvation = -3598.215025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.23629 -37.29743 -36.57480 -35.17941 -34.84796 -32.87986 -32.44626 -31.14639 -29.01356 -27.06463 -27.01930 -26.48535 -23.34914 -23.06522 -21.97581 -21.62119 -19.79008 -18.23939 -17.36583 -16.78671 -16.37127 -15.80153 -15.75410 -15.16530 -14.91447 -14.36969 -14.19464 -14.08172 -13.89612 -13.59145 -13.35727 -13.17922 -12.66851 -12.44040 -12.41536 -12.29447 -12.15405 -12.06082 -11.95492 -11.62935 -11.45873 -11.41458 -11.15584 -11.09415 -11.01392 -10.94214 -10.68635 -10.57344 -10.44146 -10.28476 -10.24478 -9.91151 -9.68214 -9.21853 -8.73792 -8.43651 -8.03532 -6.05471 -4.08990 0.83830 1.13768 1.34269 3.32091 3.39848 3.41956 3.46179 3.80957 4.36703 4.46776 4.61886 4.77152 4.94081 5.00425 5.05737 5.09975 5.10445 5.19460 5.29662 5.34414 5.45265 5.47459 5.57014 5.66498 5.67226 5.78329 5.82795 5.86831 5.88053 5.95406 5.99739 6.03544 6.10989 6.23967 6.30665 6.31694 6.36310 6.41627 6.45976 6.64848 6.68252 6.91561 7.24192 7.40299 7.61131 7.92323 8.21169 8.93731 9.56142 11.03167 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.005178 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.457858 B = 5406.169008 C = 6690.700299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 C -0.075 4.075 4 C -0.138 4.138 5 C -0.021 4.021 6 C -0.666 4.666 7 S 2.682 3.318 8 O -0.943 6.943 9 O -0.976 6.976 10 N -0.979 5.979 11 C 0.256 3.744 12 C -0.526 4.526 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.282 1.282 20 C 0.120 3.880 21 C -0.138 4.138 22 C -0.095 4.095 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.023 4.023 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.061 5.005 1.823 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 C -0.093 4.093 4 C -0.157 4.157 5 C -0.040 4.040 6 C -0.751 4.751 7 S 2.770 3.230 8 O -0.933 6.933 9 O -0.967 6.967 10 N -0.818 5.818 11 C 0.135 3.865 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.007 4.007 21 C -0.178 4.178 22 C -0.114 4.114 23 C -0.209 4.209 24 C -0.202 4.202 25 C -0.042 4.042 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.647 4.660 2.455 17.460 hybrid contribution 0.525 0.162 -0.406 0.683 sum -16.122 4.822 2.049 16.952 Atomic orbital electron populations 1.20783 0.90820 1.02870 1.02459 1.19990 0.96264 0.93237 1.01996 1.21262 0.94419 0.97510 0.96088 1.21273 0.94357 0.98310 1.01767 1.21034 1.00695 0.91083 0.91192 1.31508 1.06304 1.21706 1.15544 1.02294 0.73402 0.73626 0.73630 1.93601 1.37951 1.85195 1.76544 1.93486 1.67878 1.57912 1.77394 1.57404 1.30057 1.63637 1.30695 1.19096 0.79050 0.95460 0.92934 1.21523 0.97863 1.02488 1.34673 0.92004 1.24914 0.98188 0.95803 0.95047 1.69931 1.23270 1.24374 1.35938 0.86475 0.81615 0.81949 0.77622 1.19598 1.21016 1.20830 1.21338 0.89266 0.93080 0.96977 1.22172 0.96829 0.98766 0.99983 1.21062 0.95952 0.97572 0.96822 1.21934 0.99622 1.00334 0.99024 1.21822 0.99410 0.99485 0.99486 1.20760 0.92071 0.98426 0.92963 0.91075 0.91305 0.91569 0.85748 0.85250 0.84046 0.94459 0.94428 0.92781 0.89420 0.90155 0.92444 0.91046 0.90840 0.92899 0.93095 0.91914 0.92725 0.93065 0.93033 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.11 -1.40 5.88 -104.62 -0.62 -2.01 16 3 C -0.07 -0.87 9.70 -39.58 -0.38 -1.25 16 4 C -0.14 -1.80 10.05 -39.58 -0.40 -2.20 16 5 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 6 C -0.67 -11.26 5.97 -39.59 -0.24 -11.50 16 7 S 2.68 54.29 5.65 -107.50 -0.61 53.69 16 8 O -0.94 -22.51 16.26 -57.17 -0.93 -23.44 16 9 O -0.98 -20.10 15.84 -57.17 -0.91 -21.01 16 10 N -0.98 -20.08 2.77 -115.66 -0.32 -20.40 16 11 C 0.26 6.28 5.10 -5.19 -0.03 6.26 16 12 C -0.53 -14.51 9.38 -34.44 -0.32 -14.84 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 16 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.12 2.06 5.43 -4.04 -0.02 2.03 16 21 C -0.14 -1.99 5.01 -26.73 -0.13 -2.13 16 22 C -0.09 -1.13 2.92 -90.62 -0.26 -1.40 16 23 C -0.15 -1.67 8.95 37.16 0.33 -1.34 16 24 C -0.14 -1.52 9.19 37.15 0.34 -1.17 16 25 C -0.02 -0.34 8.08 -39.58 -0.32 -0.66 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.07 0.48 8.09 -51.92 -0.42 0.06 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 2.33 7.62 -52.48 -0.40 1.93 16 32 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 36 H 0.08 1.31 5.34 -51.93 -0.28 1.03 16 37 H 0.06 0.80 7.01 -51.93 -0.36 0.43 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.14 1.82 7.62 -52.49 -0.40 1.42 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -32.38 386.83 -11.01 -43.39 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.63 Total: 0.24 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: -2.16 Total: -29.89 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.42 Total: -45.47 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.83 Total: -44.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 54.29 SS G_CDS: -0.61 Total: 53.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.38 -11.01 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.929 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds