Wall clock time and date at job start Tue Mar 31 2020 13:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 S 1.76205 * 120.00126 * 180.26088 * 6 5 4 8 8 O 1.42105 * 106.40035 * 23.75208 * 7 6 5 9 9 O 1.42097 * 106.40122 * 156.67596 * 7 6 5 10 10 N 1.65602 * 107.21590 * 270.21445 * 7 6 5 11 11 C 1.46502 * 119.99905 * 89.99685 * 10 7 6 12 12 C 1.50703 * 109.46837 * 95.00419 * 11 10 7 13 13 H 1.07999 * 120.00158 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99892 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99606 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00026 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47259 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47165 * 119.99399 * 16 14 12 19 19 H 1.48500 * 109.47135 * 239.99697 * 16 14 12 20 20 C 1.46501 * 119.99673 * 269.99951 * 10 7 6 21 21 C 1.53001 * 109.47271 * 95.00183 * 20 10 7 22 22 C 1.52994 * 109.47242 * 179.97438 * 21 20 10 23 23 C 1.53008 * 109.47005 * 64.99872 * 22 21 20 24 24 C 1.52995 * 109.47351 * 184.99917 * 22 21 20 25 25 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 27 27 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 28 28 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 29 29 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 31 31 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 32 32 H 1.09000 * 109.47031 * 215.00064 * 11 10 7 33 33 H 1.08994 * 109.47122 * 335.00232 * 11 10 7 34 34 H 0.97006 * 119.99682 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46538 * 214.99588 * 20 10 7 36 36 H 1.08993 * 109.47427 * 334.99841 * 20 10 7 37 37 H 1.08995 * 109.46973 * 299.99966 * 21 20 10 38 38 H 1.09007 * 109.47305 * 59.99498 * 21 20 10 39 39 H 1.08998 * 109.47383 * 305.00406 * 22 21 20 40 40 H 1.08998 * 109.46614 * 60.00063 * 23 22 21 41 41 H 1.09000 * 109.47378 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47236 * 300.00382 * 23 22 21 43 43 H 1.09001 * 109.47297 * 60.00032 * 24 22 21 44 44 H 1.09000 * 109.47311 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.46797 * 299.99965 * 24 22 21 46 46 H 1.08001 * 119.99700 * 359.96970 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 16 4.4616 -2.7230 -0.0006 8 8 5.7446 -2.4457 0.5439 9 8 3.5799 -3.6953 0.5438 10 7 4.7067 -3.1474 -1.5824 11 6 5.9139 -2.7008 -2.2820 12 6 6.9660 -3.7770 -2.2055 13 1 6.7566 -4.7011 -1.6872 14 6 8.1964 -3.5815 -2.7963 15 7 8.4515 -2.4561 -3.4269 16 14 9.5007 -4.9152 -2.7008 17 1 8.9684 -6.0748 -1.9409 18 1 9.8672 -5.3483 -4.0732 19 1 10.7037 -4.3827 -2.0119 20 6 3.7163 -3.9695 -2.2821 21 6 2.7558 -3.0634 -3.0550 22 6 1.7219 -3.9220 -3.7862 23 6 0.8520 -4.6547 -2.7628 24 6 0.8393 -3.0260 -4.6574 25 6 2.1981 -1.1970 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0001 -0.0091 32 1 5.6752 -2.4997 -3.3263 33 1 6.2898 -1.7912 -1.8136 34 1 9.3170 -2.3187 -3.8429 35 1 4.2247 -4.6374 -2.9776 36 1 3.1555 -4.5587 -1.5567 37 1 2.2476 -2.3955 -2.3596 38 1 3.3167 -2.4741 -3.7805 39 1 2.2338 -4.6500 -4.4155 40 1 0.3401 -3.9267 -2.1336 41 1 0.1150 -5.2661 -3.2837 42 1 1.4807 -5.2930 -2.1421 43 1 1.4591 -2.5040 -5.3865 44 1 0.1025 -3.6376 -5.1780 45 1 0.3274 -2.2980 -4.0281 46 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171709252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:09 Heat of formation + Delta-G solvation = -91.297265 kcal Electronic energy + Delta-G solvation = -26904.305895 eV Core-core repulsion = 23305.267997 eV Total energy + Delta-G solvation = -3599.037899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29617 -38.63389 -38.24303 -36.88904 -36.32566 -34.46437 -33.84652 -32.24501 -30.52781 -28.29983 -27.92285 -27.88538 -25.01807 -24.31318 -23.45971 -22.74649 -20.81378 -19.79810 -18.89928 -18.37988 -18.26473 -17.33434 -16.98840 -16.58638 -16.12585 -15.97520 -15.42987 -15.28135 -14.90325 -14.78505 -14.58559 -14.41835 -14.21276 -13.85837 -13.73751 -13.27014 -13.20794 -13.18231 -13.13002 -13.06166 -13.03501 -12.94127 -12.78675 -12.72961 -12.40791 -12.24271 -12.18008 -12.04470 -11.91330 -11.60974 -11.49671 -11.44928 -11.32526 -10.59894 -10.32387 -9.77923 -9.74659 -8.20300 -6.31727 -0.58388 -0.16533 0.27777 1.37980 1.40638 1.52284 2.03457 2.41032 2.53896 2.83746 3.10740 3.30608 3.79144 3.86685 3.88226 4.01704 4.03927 4.11525 4.20434 4.29751 4.34365 4.50911 4.54640 4.67649 4.73656 4.81745 4.85633 4.86637 4.90431 4.92937 5.04705 5.09002 5.11155 5.17813 5.21050 5.23130 5.24425 5.29525 5.39030 5.44232 5.46617 5.55625 5.59744 5.70704 5.89783 5.92345 6.10398 6.76205 7.36833 8.87637 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.005178 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.457858 B = 5406.169008 C = 6690.700299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.063 4.063 4 C -0.136 4.136 5 C -0.051 4.051 6 C -0.674 4.674 7 S 2.684 3.316 8 O -0.992 6.992 9 O -0.987 6.987 10 N -0.986 5.986 11 C 0.274 3.726 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.269 1.269 19 H -0.279 1.279 20 C 0.114 3.886 21 C -0.129 4.129 22 C -0.093 4.093 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.036 4.036 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.121 0.879 32 H 0.029 0.971 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.932 6.152 1.564 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.081 4.081 4 C -0.154 4.154 5 C -0.070 4.070 6 C -0.763 4.763 7 S 2.779 3.221 8 O -0.983 6.983 9 O -0.977 6.977 10 N -0.823 5.823 11 C 0.151 3.849 12 C -0.586 4.586 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.564 5.564 16 Si 0.780 3.220 17 H -0.194 1.194 18 H -0.194 1.194 19 H -0.205 1.205 20 C -0.011 4.011 21 C -0.169 4.169 22 C -0.113 4.113 23 C -0.209 4.209 24 C -0.198 4.198 25 C -0.055 4.055 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.186 0.814 30 H 0.175 0.825 31 H 0.139 0.861 32 H 0.047 0.953 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.507 5.740 2.186 20.451 hybrid contribution 1.299 -0.090 -0.281 1.332 sum -18.208 5.650 1.905 19.159 Atomic orbital electron populations 1.20894 0.87810 1.04371 1.03819 1.20453 0.98352 0.92309 0.99742 1.21795 0.93791 0.99122 0.93375 1.21610 0.95456 0.97922 1.00442 1.21066 1.00148 0.92384 0.93437 1.30752 1.07184 1.19358 1.19045 1.01716 0.72806 0.74541 0.73067 1.93530 1.41008 1.86181 1.77551 1.93453 1.67513 1.59326 1.77456 1.57254 1.29849 1.64708 1.30535 1.18611 0.80006 0.93886 0.92406 1.21837 0.99191 1.02863 1.34664 0.92971 1.25710 1.00187 0.97962 0.94683 1.70018 1.23997 1.25853 1.36492 0.85549 0.78868 0.79308 0.78253 1.19445 1.19435 1.20499 1.21548 0.89053 0.93412 0.97110 1.22089 0.96702 0.98536 0.99543 1.21063 0.95651 0.97472 0.97067 1.21934 0.99644 1.00475 0.98818 1.21786 0.99311 0.99501 0.99217 1.20968 0.90940 1.00149 0.93468 0.89603 0.90802 0.89217 0.81412 0.82534 0.86084 0.95291 0.96638 0.92385 0.90522 0.89278 0.91673 0.92540 0.91192 0.92135 0.91245 0.93149 0.93301 0.91390 0.92257 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.74 16 2 C -0.11 -2.26 5.88 -19.87 -0.12 -2.38 16 3 C -0.06 -1.21 9.70 22.27 0.22 -1.00 16 4 C -0.14 -3.26 10.05 22.27 0.22 -3.04 16 5 C -0.05 -1.67 9.52 22.27 0.21 -1.46 16 6 C -0.67 -23.26 5.97 22.27 0.13 -23.12 16 7 S 2.68 114.71 5.65 -56.49 -0.32 114.39 16 8 O -0.99 -50.89 16.26 -128.00 -2.08 -52.97 16 9 O -0.99 -42.08 15.84 -128.00 -2.03 -44.11 16 10 N -0.99 -42.75 2.77 -519.84 -1.44 -44.19 16 11 C 0.27 14.28 5.10 85.63 0.44 14.72 16 12 C -0.55 -31.51 9.38 25.60 0.24 -31.27 16 13 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 14 C 0.01 0.80 5.46 84.66 0.46 1.27 16 15 N -0.92 -54.68 13.29 21.45 0.28 -54.39 16 16 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 C 0.11 4.07 5.43 86.38 0.47 4.54 16 21 C -0.13 -3.76 5.01 30.59 0.15 -3.61 16 22 C -0.09 -2.13 2.92 -10.79 -0.03 -2.16 16 23 C -0.15 -3.08 8.95 71.98 0.64 -2.44 16 24 C -0.14 -2.65 9.19 71.98 0.66 -1.99 16 25 C -0.04 -1.00 8.08 22.27 0.18 -0.82 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 28 H 0.09 0.79 8.09 -2.38 -0.02 0.77 16 29 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.12 4.36 7.62 -2.91 -0.02 4.33 16 32 H 0.03 1.53 8.11 -2.39 -0.02 1.51 16 33 H 0.02 0.87 7.61 -2.39 -0.02 0.86 16 34 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 35 H 0.08 2.86 8.11 -2.38 -0.02 2.84 16 36 H 0.09 3.00 5.34 -2.39 -0.01 2.99 16 37 H 0.06 1.78 7.01 -2.39 -0.02 1.76 16 38 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.14 6.57 -2.39 -0.02 1.12 16 43 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.14 3.65 7.62 -2.91 -0.02 3.63 16 Total: -1.00 -73.11 386.83 1.98 -71.12 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.94 Total: 16.34 kcal Atomic # 6 Polarization: -58.09 SS G_CDS: 4.60 Total: -53.49 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -1.15 Total: -98.58 kcal Atomic # 8 Polarization: -92.96 SS G_CDS: -4.11 Total: -97.07 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 114.71 SS G_CDS: -0.32 Total: 114.39 kcal Total: -73.11 1.98 -71.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.174 kcal (2) G-P(sol) polarization free energy of solvation -73.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds