Wall clock time and date at job start Tue Mar 31 2020 14:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99573 * 179.74512 * 6 5 4 8 8 C 1.38238 * 120.00177 * 0.53270 * 7 6 5 9 9 S 1.76204 * 119.99879 * 179.76803 * 8 7 6 10 10 O 1.42094 * 106.40291 * 23.51721 * 9 8 7 11 11 O 1.42099 * 106.39929 * 156.43731 * 9 8 7 12 12 N 1.65596 * 107.21593 * 269.97569 * 9 8 7 13 13 C 1.46503 * 120.00312 * 65.00301 * 12 9 8 14 14 C 1.52995 * 109.47367 * 164.99697 * 13 12 9 15 15 C 1.52991 * 109.47241 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47258 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99892 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99936 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00065 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99887 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47304 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47314 * 120.00268 * 20 18 16 23 23 H 1.48504 * 109.47288 * 239.99895 * 20 18 16 24 24 C 1.38230 * 119.99647 * 359.74475 * 8 7 6 25 25 C 1.38231 * 120.00640 * 359.97438 * 24 8 7 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 36 36 H 1.08005 * 119.99734 * 180.29392 * 7 6 5 37 37 H 0.97005 * 120.00011 * 245.00321 * 12 9 8 38 38 H 1.09004 * 109.46731 * 284.99837 * 13 12 9 39 39 H 1.08996 * 109.46744 * 44.99808 * 13 12 9 40 40 H 1.09004 * 109.47535 * 300.00537 * 14 13 12 41 41 H 1.09009 * 109.47081 * 60.00022 * 14 13 12 42 42 H 1.09005 * 109.47262 * 300.00107 * 15 14 13 43 43 H 1.09001 * 109.47320 * 60.00180 * 15 14 13 44 44 H 0.97006 * 119.99914 * 180.02562 * 19 18 16 45 45 H 1.08007 * 119.99539 * 180.02562 * 24 8 7 46 46 H 1.08000 * 120.00464 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0717 -1.6722 8 6 6.2973 -1.0281 -1.0783 9 16 8.0534 -1.1542 -1.0072 10 8 8.5551 0.1717 -1.1030 11 8 8.3496 -2.0207 0.0794 12 7 8.5443 -1.9403 -2.3795 13 6 8.3458 -1.3182 -3.6909 14 6 9.1977 -2.0441 -4.7340 15 6 8.9909 -1.3940 -6.1034 16 6 9.8295 -2.1095 -7.1310 17 1 10.4484 -2.9442 -6.8367 18 6 9.8066 -1.6984 -8.4469 19 7 9.0533 -0.6816 -8.8052 20 14 10.8466 -2.5849 -9.7205 21 1 11.5986 -3.6856 -9.0663 22 1 9.9651 -3.1468 -10.7753 23 1 11.8024 -1.6272 -10.3326 24 6 5.5100 -2.0287 -0.5400 25 6 4.1324 -1.9293 -0.5949 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.8680 1.0254 -2.2006 36 1 6.3219 0.8537 -2.0926 37 1 8.9633 -2.8129 -2.3151 38 1 7.2942 -1.3858 -3.9697 39 1 8.6429 -0.2705 -3.6446 40 1 10.2493 -1.9767 -4.4552 41 1 8.9006 -3.0920 -4.7803 42 1 7.9393 -1.4611 -6.3825 43 1 9.2882 -0.3463 -6.0569 44 1 9.0369 -0.3927 -9.7311 45 1 5.9713 -2.8878 -0.0756 46 1 3.5173 -2.7108 -0.1739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171713935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:53 Heat of formation + Delta-G solvation = -87.767888 kcal Electronic energy + Delta-G solvation = -24918.525152 eV Core-core repulsion = 21319.640299 eV Total energy + Delta-G solvation = -3598.884853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83351 -37.19996 -36.61089 -35.96642 -35.78485 -33.24314 -31.96935 -31.27290 -30.86174 -27.55012 -27.07406 -26.39370 -23.17048 -22.92585 -22.39250 -20.58923 -20.37268 -19.36011 -18.04651 -17.19734 -16.57519 -16.16943 -15.94032 -15.49125 -14.95976 -14.78090 -14.65922 -14.49835 -14.40349 -14.29304 -13.73830 -13.49707 -12.98270 -12.60563 -12.54468 -12.46039 -12.35889 -12.15752 -12.12204 -12.01674 -11.93138 -11.54721 -11.48986 -11.37519 -11.25470 -11.04185 -10.96279 -10.76859 -10.73247 -10.53340 -9.93597 -9.48094 -9.32838 -9.24689 -9.20220 -9.08589 -8.38586 -6.03572 -4.05969 0.39513 0.68985 1.11983 3.01294 3.29351 3.34915 3.37155 3.41121 3.81168 4.28366 4.29932 4.42796 4.44401 4.54010 4.68109 4.71892 4.85630 5.08562 5.09968 5.23237 5.27937 5.32699 5.34751 5.35559 5.41498 5.50790 5.51649 5.57909 5.66127 5.74802 5.75322 5.87995 5.90336 5.94193 5.95730 5.98215 6.08888 6.25368 6.56446 6.64580 6.75979 6.95175 7.15776 7.61950 7.74451 7.95523 8.37389 9.00845 9.58405 11.07789 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.002658 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.307605 B =10532.859799 C =11932.860324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.154 4.154 4 C -0.086 4.086 5 C -0.026 4.026 6 C -0.137 4.137 7 C -0.015 4.015 8 C -0.678 4.678 9 S 2.694 3.306 10 O -0.958 6.958 11 O -0.968 6.968 12 N -1.113 6.113 13 C 0.113 3.887 14 C -0.116 4.116 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.016 4.016 25 C -0.142 4.142 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.260 0.740 45 H 0.139 0.861 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.076 0.302 18.841 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.212 4.212 4 C -0.123 4.123 5 C -0.026 4.026 6 C -0.156 4.156 7 C -0.035 4.035 8 C -0.765 4.765 9 S 2.784 3.216 10 O -0.948 6.948 11 O -0.959 6.959 12 N -0.874 5.874 13 C -0.012 4.012 14 C -0.155 4.155 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.035 4.035 25 C -0.161 4.161 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.252 0.748 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.156 0.844 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.691 0.913 19.342 24.923 hybrid contribution -0.056 -0.921 -1.153 1.477 sum -15.747 -0.007 18.188 24.058 Atomic orbital electron populations 1.21849 0.94782 1.01836 1.02009 1.21080 0.95712 0.96615 0.97543 1.21961 1.01773 0.95573 1.01844 1.20849 0.90479 1.01890 0.99087 1.20199 0.95941 0.93239 0.93233 1.21200 0.93504 0.99460 1.01443 1.21002 0.95583 0.94879 0.92001 1.30987 1.27217 1.03872 1.14427 1.01791 0.73683 0.73671 0.72473 1.93586 1.77582 1.37415 1.86191 1.93564 1.83911 1.67024 1.51362 1.55489 1.76095 1.34053 1.21789 1.21602 1.00602 0.97843 0.81182 1.21849 0.98383 0.99265 0.95983 1.19085 0.97396 0.96195 0.89025 1.21253 1.26011 1.15669 0.92937 0.92549 1.25027 0.95669 0.95132 0.98680 1.69972 1.39544 1.26326 1.17562 0.86529 0.80227 0.79682 0.81501 1.19750 1.21047 1.20992 1.20887 0.93900 0.96024 0.92733 1.21133 0.94737 0.98589 1.01659 0.92483 0.92608 0.92519 0.90997 0.92475 0.92682 0.92056 0.90429 0.90280 0.85038 0.84025 0.74798 0.92156 0.90503 0.92340 0.92584 0.96327 0.96154 0.93013 0.84362 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.09 -0.59 2.91 -90.62 -0.26 -0.85 16 3 C -0.15 -1.06 8.78 37.16 0.33 -0.73 16 4 C -0.09 -0.60 4.84 -27.89 -0.13 -0.74 16 5 C -0.03 -0.24 4.70 -104.62 -0.49 -0.73 16 6 C -0.14 -1.40 7.98 -39.58 -0.32 -1.72 16 7 C -0.02 -0.18 9.52 -39.58 -0.38 -0.56 16 8 C -0.68 -8.41 5.95 -39.58 -0.24 -8.65 16 9 S 2.69 37.21 5.74 -107.50 -0.62 36.59 16 10 O -0.96 -15.93 16.75 -57.17 -0.96 -16.88 16 11 O -0.97 -14.90 17.28 -57.17 -0.99 -15.88 16 12 N -1.11 -14.99 6.00 -10.61 -0.06 -15.05 16 13 C 0.11 1.79 6.22 -4.04 -0.03 1.77 16 14 C -0.12 -2.21 5.29 -26.74 -0.14 -2.35 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.02 -0.18 9.52 -39.59 -0.38 -0.56 16 25 C -0.14 -1.37 9.70 -39.58 -0.38 -1.76 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.48 6.28 -51.93 -0.33 0.16 16 33 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.13 1.09 8.05 -52.49 -0.42 0.67 16 36 H 0.14 1.60 7.62 -52.48 -0.40 1.20 16 37 H 0.42 4.89 8.65 -34.47 -0.30 4.59 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.14 1.35 7.62 -52.48 -0.40 0.95 16 46 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 389.89 15.07 5.88 5.88 Total: -1.00 -33.60 389.89 -11.37 -44.96 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.70 Total: -0.12 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -2.63 Total: -30.16 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.67 Total: -40.74 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.95 Total: -32.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 37.21 SS G_CDS: -0.62 Total: 36.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.60 -11.37 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.804 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds