Wall clock time and date at job start Tue Mar 31 2020 14:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99573 * 179.74512 * 6 5 4 8 8 C 1.38238 * 120.00177 * 0.53270 * 7 6 5 9 9 S 1.76204 * 119.99879 * 179.76803 * 8 7 6 10 10 O 1.42094 * 106.40291 * 23.51721 * 9 8 7 11 11 O 1.42099 * 106.39929 * 156.43731 * 9 8 7 12 12 N 1.65596 * 107.21593 * 269.97569 * 9 8 7 13 13 C 1.46503 * 120.00312 * 65.00301 * 12 9 8 14 14 C 1.52995 * 109.47367 * 164.99697 * 13 12 9 15 15 C 1.52991 * 109.47241 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47258 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99892 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99936 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00065 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99887 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47304 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47314 * 120.00268 * 20 18 16 23 23 H 1.48504 * 109.47288 * 239.99895 * 20 18 16 24 24 C 1.38230 * 119.99647 * 359.74475 * 8 7 6 25 25 C 1.38231 * 120.00640 * 359.97438 * 24 8 7 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 36 36 H 1.08005 * 119.99734 * 180.29392 * 7 6 5 37 37 H 0.97005 * 120.00011 * 245.00321 * 12 9 8 38 38 H 1.09004 * 109.46731 * 284.99837 * 13 12 9 39 39 H 1.08996 * 109.46744 * 44.99808 * 13 12 9 40 40 H 1.09004 * 109.47535 * 300.00537 * 14 13 12 41 41 H 1.09009 * 109.47081 * 60.00022 * 14 13 12 42 42 H 1.09005 * 109.47262 * 300.00107 * 15 14 13 43 43 H 1.09001 * 109.47320 * 60.00180 * 15 14 13 44 44 H 0.97006 * 119.99914 * 180.02562 * 19 18 16 45 45 H 1.08007 * 119.99539 * 180.02562 * 24 8 7 46 46 H 1.08000 * 120.00464 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0717 -1.6722 8 6 6.2973 -1.0281 -1.0783 9 16 8.0534 -1.1542 -1.0072 10 8 8.5551 0.1717 -1.1030 11 8 8.3496 -2.0207 0.0794 12 7 8.5443 -1.9403 -2.3795 13 6 8.3458 -1.3182 -3.6909 14 6 9.1977 -2.0441 -4.7340 15 6 8.9909 -1.3940 -6.1034 16 6 9.8295 -2.1095 -7.1310 17 1 10.4484 -2.9442 -6.8367 18 6 9.8066 -1.6984 -8.4469 19 7 9.0533 -0.6816 -8.8052 20 14 10.8466 -2.5849 -9.7205 21 1 11.5986 -3.6856 -9.0663 22 1 9.9651 -3.1468 -10.7753 23 1 11.8024 -1.6272 -10.3326 24 6 5.5100 -2.0287 -0.5400 25 6 4.1324 -1.9293 -0.5949 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.8680 1.0254 -2.2006 36 1 6.3219 0.8537 -2.0926 37 1 8.9633 -2.8129 -2.3151 38 1 7.2942 -1.3858 -3.9697 39 1 8.6429 -0.2705 -3.6446 40 1 10.2493 -1.9767 -4.4552 41 1 8.9006 -3.0920 -4.7803 42 1 7.9393 -1.4611 -6.3825 43 1 9.2882 -0.3463 -6.0569 44 1 9.0369 -0.3927 -9.7311 45 1 5.9713 -2.8878 -0.0756 46 1 3.5173 -2.7108 -0.1739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171713935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:53 Heat of formation + Delta-G solvation = -108.362096 kcal Electronic energy + Delta-G solvation = -24919.418184 eV Core-core repulsion = 21319.640299 eV Total energy + Delta-G solvation = -3599.777885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59299 -38.40725 -37.40367 -37.18616 -36.98977 -35.16422 -32.70797 -32.62054 -32.07602 -28.20666 -28.06225 -27.69466 -24.79247 -23.87963 -23.17526 -22.22333 -20.91084 -20.48164 -19.07054 -18.56734 -18.30812 -17.28286 -16.75481 -16.54834 -16.38888 -16.07723 -15.75265 -15.45229 -15.30093 -15.19908 -14.51692 -14.32749 -14.15632 -14.03990 -13.87222 -13.64083 -13.28132 -13.21155 -13.17535 -13.10576 -13.03296 -12.81357 -12.70143 -12.53333 -12.28451 -12.21946 -12.09490 -11.81524 -11.71599 -11.54356 -11.51892 -11.38976 -11.13333 -10.53563 -10.45860 -10.08958 -10.02590 -8.18229 -6.28211 -0.66460 -0.21229 0.30732 1.41539 1.42550 1.55053 1.96065 2.42617 2.45041 2.75794 3.15751 3.28298 3.67202 3.74038 3.92089 4.01365 4.04389 4.06049 4.26674 4.29539 4.34198 4.36087 4.51126 4.65924 4.68854 4.71721 4.76875 4.81634 4.95875 4.98470 4.98772 5.03545 5.07629 5.08549 5.17496 5.19868 5.23395 5.30594 5.37900 5.45994 5.55300 5.55601 5.76743 5.86536 5.87972 6.07120 6.26944 6.88965 7.40817 8.93727 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.002658 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.307605 B =10532.859799 C =11932.860324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.156 4.156 4 C -0.084 4.084 5 C -0.023 4.023 6 C -0.142 4.142 7 C -0.035 4.035 8 C -0.688 4.688 9 S 2.712 3.288 10 O -0.991 6.991 11 O -0.984 6.984 12 N -1.107 6.107 13 C 0.122 3.878 14 C -0.104 4.104 15 C 0.021 3.979 16 C -0.540 4.540 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.281 1.281 24 C -0.027 4.027 25 C -0.143 4.143 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.426 0.574 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.001 0.999 43 H -0.004 1.004 44 H 0.263 0.737 45 H 0.150 0.850 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.321 -1.061 19.213 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.213 4.213 4 C -0.121 4.121 5 C -0.023 4.023 6 C -0.161 4.161 7 C -0.055 4.055 8 C -0.777 4.777 9 S 2.804 3.196 10 O -0.981 6.981 11 O -0.974 6.974 12 N -0.869 5.869 13 C -0.004 4.004 14 C -0.144 4.144 15 C -0.017 4.017 16 C -0.578 4.578 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.206 1.206 24 C -0.047 4.047 25 C -0.162 4.162 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.167 0.833 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.894 -0.470 19.731 25.980 hybrid contribution 0.231 -0.468 -1.227 1.333 sum -16.664 -0.938 18.504 24.919 Atomic orbital electron populations 1.21826 0.93778 1.02372 1.02254 1.21057 0.96469 0.96048 0.97090 1.21976 1.00898 0.96175 1.02273 1.20911 0.88687 1.02928 0.99563 1.20535 0.97281 0.92575 0.91905 1.21445 0.92922 1.00345 1.01393 1.21130 0.96583 0.94959 0.92781 1.30629 1.25686 1.05065 1.16326 1.00999 0.74109 0.72562 0.71898 1.93541 1.78949 1.39034 1.86541 1.93536 1.84715 1.67278 1.51882 1.55255 1.76632 1.34346 1.20650 1.21335 1.00546 0.97159 0.81310 1.21623 0.99186 0.99693 0.93853 1.18995 0.95757 0.95091 0.91812 1.21725 1.26265 1.15922 0.93923 0.92039 1.25948 0.96946 0.95922 1.01071 1.70096 1.41117 1.27865 1.18193 0.85433 0.78512 0.78631 0.78659 1.18628 1.20427 1.20648 1.21147 0.94730 0.96041 0.92738 1.21487 0.94376 0.99272 1.01032 0.92276 0.91935 0.92285 0.91276 0.92013 0.92378 0.93384 0.89034 0.89732 0.83493 0.84392 0.73703 0.91046 0.91168 0.92220 0.91380 0.98099 0.98597 0.92822 0.83264 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 71.98 0.66 -0.57 16 2 C -0.09 -0.95 2.91 -10.79 -0.03 -0.98 16 3 C -0.16 -1.91 8.78 71.98 0.63 -1.28 16 4 C -0.08 -0.97 4.84 29.85 0.14 -0.82 16 5 C -0.02 -0.38 4.70 -19.87 -0.09 -0.47 16 6 C -0.14 -2.77 7.98 22.27 0.18 -2.59 16 7 C -0.04 -0.83 9.52 22.27 0.21 -0.62 16 8 C -0.69 -16.77 5.95 22.27 0.13 -16.64 16 9 S 2.71 74.93 5.74 -56.49 -0.32 74.60 16 10 O -0.99 -33.66 16.75 -128.00 -2.14 -35.80 16 11 O -0.98 -29.90 17.28 -128.00 -2.21 -32.12 16 12 N -1.11 -29.28 6.00 -187.49 -1.12 -30.40 16 13 C 0.12 3.87 6.22 86.38 0.54 4.41 16 14 C -0.10 -3.97 5.29 30.59 0.16 -3.81 16 15 C 0.02 1.08 4.97 29.85 0.15 1.23 16 16 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 19 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 20 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C -0.03 -0.57 9.52 22.27 0.21 -0.36 16 25 C -0.14 -2.44 9.70 22.27 0.22 -2.22 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.72 6.28 -2.39 -0.01 0.70 16 33 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.08 0.91 8.08 -2.39 -0.02 0.90 16 35 H 0.15 2.28 8.05 -2.91 -0.02 2.26 16 36 H 0.14 3.24 7.62 -2.91 -0.02 3.22 16 37 H 0.43 9.57 8.65 -96.74 -0.84 8.74 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 45 H 0.15 2.68 7.62 -2.91 -0.02 2.66 16 46 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -71.59 389.89 0.43 -71.16 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.11 Total: 16.44 kcal Atomic # 6 Polarization: -57.87 SS G_CDS: 3.81 Total: -54.06 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -0.84 Total: -85.95 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -4.36 Total: -67.92 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 74.93 SS G_CDS: -0.32 Total: 74.60 kcal Total: -71.59 0.43 -71.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.203 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds