Wall clock time and date at job start Tue Mar 31 2020 14:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42099 * 106.40466 * 203.54194 * 9 8 7 11 11 O 1.42098 * 106.40181 * 336.46004 * 9 8 7 12 12 N 1.65602 * 107.21888 * 89.99875 * 9 8 7 13 13 C 1.46500 * 119.99756 * 65.00258 * 12 9 8 14 14 C 1.52998 * 109.46901 * 164.99878 * 13 12 9 15 15 C 1.53002 * 109.47175 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47111 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99673 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00018 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46753 * 60.00024 * 20 18 16 22 22 H 1.48498 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47095 * 300.00323 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 26 26 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 27 27 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 28 28 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 31 31 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 32 32 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 33 33 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 34 34 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 35 35 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 37 37 H 0.97000 * 119.99945 * 245.00458 * 12 9 8 38 38 H 1.09000 * 109.47104 * 284.99861 * 13 12 9 39 39 H 1.08996 * 109.47400 * 45.00315 * 13 12 9 40 40 H 1.09000 * 109.47228 * 299.99907 * 14 13 12 41 41 H 1.09003 * 109.47349 * 59.99837 * 14 13 12 42 42 H 1.09000 * 109.47117 * 300.00158 * 15 14 13 43 43 H 1.08996 * 109.47114 * 60.00445 * 15 14 13 44 44 H 0.97003 * 119.99749 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 16 3.5334 -2.8413 4.9314 10 8 3.8127 -1.8298 5.8895 11 8 2.6289 -3.9106 5.1715 12 7 4.9868 -3.5357 4.5472 13 6 6.1354 -2.6914 4.2092 14 6 7.4160 -3.5268 4.2636 15 6 8.6155 -2.6452 3.9101 16 6 9.8768 -3.4683 3.9631 17 1 9.8278 -4.5153 4.2233 18 6 11.0934 -2.8843 3.6804 19 7 11.1531 -1.6090 3.3649 20 14 12.6569 -3.9044 3.7467 21 1 12.5604 -5.0219 2.7735 22 1 13.8211 -3.0488 3.4035 23 1 12.8319 -4.4536 5.1153 24 6 3.2880 -0.6902 3.2690 25 6 2.8265 -0.0384 2.1407 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1391 34 1 3.1300 -0.7218 -1.2489 35 1 1.0771 -2.5585 0.7387 36 1 1.8973 -3.7190 2.7496 37 1 5.0777 -4.5014 4.5458 38 1 6.0069 -2.2883 3.2047 39 1 6.2061 -1.8712 4.9236 40 1 7.5444 -3.9299 5.2682 41 1 7.3453 -4.3471 3.5493 42 1 8.4868 -2.2424 2.9055 43 1 8.6864 -1.8248 4.6242 44 1 12.0090 -1.1983 3.1657 45 1 3.9085 -0.1651 3.9801 46 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171714184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:56 Heat of formation + Delta-G solvation = -80.978710 kcal Electronic energy + Delta-G solvation = -25243.514968 eV Core-core repulsion = 21644.924515 eV Total energy + Delta-G solvation = -3598.590453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17054 -37.19484 -36.71659 -35.96033 -35.77784 -33.23929 -31.44397 -30.86196 -30.48934 -27.74955 -27.62865 -26.38928 -23.78872 -23.04358 -22.66951 -20.60155 -19.80015 -19.26555 -18.12207 -17.20463 -16.54514 -16.02113 -15.95177 -15.33867 -14.99262 -14.66963 -14.58258 -14.51167 -14.33791 -14.01527 -13.70382 -13.40644 -13.21020 -12.56394 -12.51678 -12.36682 -12.33143 -12.15409 -12.05328 -12.01263 -11.93495 -11.78339 -11.54680 -11.41536 -11.36304 -10.92684 -10.88420 -10.76292 -10.71442 -10.57835 -9.92601 -9.47491 -9.34594 -9.24767 -9.20304 -9.10219 -8.37697 -6.03040 -4.05642 0.40634 0.70227 1.13433 3.02329 3.31938 3.36235 3.36539 3.39100 3.81834 4.14926 4.26383 4.40540 4.44202 4.59851 4.71204 4.79842 4.86961 5.09292 5.17387 5.24248 5.32949 5.33103 5.35781 5.38986 5.47831 5.50094 5.55156 5.56420 5.66434 5.70635 5.75284 5.83264 5.91111 5.92261 5.96521 6.05401 6.09283 6.27129 6.56723 6.65180 6.76203 6.95378 7.16116 7.61771 7.74816 7.95787 8.37669 9.00696 9.58581 11.08248 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002938 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.141378 B = 9526.666833 C =11072.847890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.018 4.018 6 C -0.140 4.140 7 C -0.017 4.017 8 C -0.679 4.679 9 S 2.694 3.306 10 O -0.958 6.958 11 O -0.968 6.968 12 N -1.113 6.113 13 C 0.113 3.887 14 C -0.116 4.116 15 C 0.022 3.978 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.014 4.014 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.142 0.858 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.562 3.182 -7.606 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.205 4.205 4 C -0.197 4.197 5 C -0.018 4.018 6 C -0.159 4.159 7 C -0.036 4.036 8 C -0.765 4.765 9 S 2.784 3.216 10 O -0.948 6.948 11 O -0.959 6.959 12 N -0.874 5.874 13 C -0.012 4.012 14 C -0.155 4.155 15 C -0.016 4.016 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.033 4.033 25 C -0.161 4.161 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.252 0.748 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.160 0.840 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.879 3.508 -6.856 24.141 hybrid contribution 1.036 -0.666 -0.803 1.470 sum -21.843 2.842 -7.658 23.320 Atomic orbital electron populations 1.21896 0.93246 1.02288 1.02180 1.19654 0.96034 0.95459 0.92606 1.22001 1.01677 0.94551 1.02228 1.21904 1.01715 1.00213 0.95899 1.20174 0.93428 0.93723 0.94470 1.21067 1.02005 0.94637 0.98188 1.20874 0.91701 0.99445 0.91563 1.30984 1.14942 1.07138 1.23454 1.01792 0.72480 0.73427 0.73923 1.93587 1.84410 1.59956 1.56832 1.93564 1.63015 1.54658 1.84629 1.55486 1.26057 1.17906 1.87976 1.21600 0.85754 0.93845 1.00035 1.21851 0.93290 0.98943 1.01401 1.19071 0.90672 0.94814 0.97040 1.21181 0.91701 0.96231 1.46960 0.92661 1.25017 0.99176 0.94949 0.95269 1.69949 1.25595 1.10785 1.47075 0.86644 0.82650 0.80068 0.78548 1.20275 1.21292 1.20209 1.21015 0.94212 0.92093 0.96024 1.21340 0.99274 1.00959 0.94564 0.92344 0.91995 0.92255 0.91797 0.92069 0.92052 0.92248 0.91999 0.92056 0.85315 0.84376 0.74813 0.92159 0.90502 0.92342 0.92595 0.96346 0.96166 0.92897 0.84029 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.29 37.16 0.31 -0.58 16 2 C -0.04 -0.28 0.85 -155.66 -0.13 -0.41 16 3 C -0.15 -1.00 7.13 37.16 0.26 -0.74 16 4 C -0.14 -0.99 8.29 37.16 0.31 -0.68 16 5 C -0.02 -0.17 4.76 -104.62 -0.50 -0.67 16 6 C -0.14 -1.38 8.71 -39.59 -0.34 -1.73 16 7 C -0.02 -0.19 9.52 -39.59 -0.38 -0.56 16 8 C -0.68 -8.51 5.95 -39.58 -0.24 -8.74 16 9 S 2.69 37.45 5.74 -107.50 -0.62 36.83 16 10 O -0.96 -16.01 16.75 -57.17 -0.96 -16.97 16 11 O -0.97 -14.97 17.28 -57.17 -0.99 -15.95 16 12 N -1.11 -15.07 6.00 -10.62 -0.06 -15.14 16 13 C 0.11 1.80 6.22 -4.04 -0.03 1.77 16 14 C -0.12 -2.22 5.29 -26.73 -0.14 -2.36 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.01 -0.17 9.52 -39.58 -0.38 -0.55 16 25 C -0.14 -1.51 8.98 -39.58 -0.36 -1.86 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 29 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 32 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.13 0.97 7.10 -52.49 -0.37 0.60 16 36 H 0.14 1.36 7.62 -52.49 -0.40 0.96 16 37 H 0.42 4.92 8.65 -34.47 -0.30 4.62 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.14 1.62 7.62 -52.49 -0.40 1.22 16 46 H 0.14 1.17 5.90 -52.49 -0.31 0.86 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -33.61 384.88 -10.77 -44.38 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.50 Total: 0.33 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -2.16 Total: -29.95 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.67 Total: -40.83 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.95 Total: -32.92 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.62 Total: 36.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.61 -10.77 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171714184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.603 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds