Wall clock time and date at job start Tue Mar 31 2020 14:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42099 * 106.40466 * 203.54194 * 9 8 7 11 11 O 1.42098 * 106.40181 * 336.46004 * 9 8 7 12 12 N 1.65602 * 107.21888 * 89.99875 * 9 8 7 13 13 C 1.46500 * 119.99756 * 65.00258 * 12 9 8 14 14 C 1.52998 * 109.46901 * 164.99878 * 13 12 9 15 15 C 1.53002 * 109.47175 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47111 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99673 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00018 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46753 * 60.00024 * 20 18 16 22 22 H 1.48498 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47095 * 300.00323 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 26 26 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 27 27 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 28 28 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 31 31 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 32 32 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 33 33 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 34 34 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 35 35 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 37 37 H 0.97000 * 119.99945 * 245.00458 * 12 9 8 38 38 H 1.09000 * 109.47104 * 284.99861 * 13 12 9 39 39 H 1.08996 * 109.47400 * 45.00315 * 13 12 9 40 40 H 1.09000 * 109.47228 * 299.99907 * 14 13 12 41 41 H 1.09003 * 109.47349 * 59.99837 * 14 13 12 42 42 H 1.09000 * 109.47117 * 300.00158 * 15 14 13 43 43 H 1.08996 * 109.47114 * 60.00445 * 15 14 13 44 44 H 0.97003 * 119.99749 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 16 3.5334 -2.8413 4.9314 10 8 3.8127 -1.8298 5.8895 11 8 2.6289 -3.9106 5.1715 12 7 4.9868 -3.5357 4.5472 13 6 6.1354 -2.6914 4.2092 14 6 7.4160 -3.5268 4.2636 15 6 8.6155 -2.6452 3.9101 16 6 9.8768 -3.4683 3.9631 17 1 9.8278 -4.5153 4.2233 18 6 11.0934 -2.8843 3.6804 19 7 11.1531 -1.6090 3.3649 20 14 12.6569 -3.9044 3.7467 21 1 12.5604 -5.0219 2.7735 22 1 13.8211 -3.0488 3.4035 23 1 12.8319 -4.4536 5.1153 24 6 3.2880 -0.6902 3.2690 25 6 2.8265 -0.0384 2.1407 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1391 34 1 3.1300 -0.7218 -1.2489 35 1 1.0771 -2.5585 0.7387 36 1 1.8973 -3.7190 2.7496 37 1 5.0777 -4.5014 4.5458 38 1 6.0069 -2.2883 3.2047 39 1 6.2061 -1.8712 4.9236 40 1 7.5444 -3.9299 5.2682 41 1 7.3453 -4.3471 3.5493 42 1 8.4868 -2.2424 2.9055 43 1 8.6864 -1.8248 4.6242 44 1 12.0090 -1.1983 3.1657 45 1 3.9085 -0.1651 3.9801 46 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171714184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:55 Heat of formation + Delta-G solvation = -101.915091 kcal Electronic energy + Delta-G solvation = -25244.422837 eV Core-core repulsion = 21644.924515 eV Total energy + Delta-G solvation = -3599.498322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92374 -38.41019 -37.46407 -37.32200 -36.99469 -35.16406 -32.63807 -32.25517 -31.29035 -28.30832 -28.20156 -28.13062 -24.79076 -24.59701 -23.52015 -22.23734 -20.70480 -20.16381 -19.14420 -18.56374 -18.32140 -17.22863 -16.74309 -16.51533 -16.31634 -16.02138 -15.80250 -15.52807 -15.22580 -14.70950 -14.44443 -14.30903 -14.21520 -14.03991 -13.99552 -13.72644 -13.29072 -13.22617 -13.18393 -13.07796 -12.87084 -12.75931 -12.56959 -12.53896 -12.52626 -12.33852 -12.22260 -11.92242 -11.72432 -11.54016 -11.48756 -11.38899 -11.15789 -10.52418 -10.46296 -10.14360 -10.04570 -8.17860 -6.28136 -0.66798 -0.21779 0.29730 1.42292 1.44648 1.52410 1.95549 2.42726 2.44725 2.75369 3.15950 3.27636 3.50516 3.66993 3.91484 4.03515 4.04095 4.05639 4.26531 4.28664 4.31328 4.39218 4.51712 4.68213 4.71335 4.75021 4.77005 4.87991 4.91318 4.95130 4.98405 5.00941 5.01597 5.06012 5.17837 5.19602 5.23095 5.28436 5.36686 5.40724 5.54690 5.55085 5.76671 5.84230 5.87812 6.06767 6.26918 6.88637 7.40827 8.93693 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002938 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.141378 B = 9526.666833 C =11072.847890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.037 4.037 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.017 4.017 6 C -0.140 4.140 7 C -0.027 4.027 8 C -0.687 4.687 9 S 2.712 3.288 10 O -0.990 6.990 11 O -0.983 6.983 12 N -1.107 6.107 13 C 0.122 3.878 14 C -0.104 4.104 15 C 0.023 3.977 16 C -0.544 4.544 17 H 0.061 0.939 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.269 1.269 24 C -0.033 4.033 25 C -0.150 4.150 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.426 0.574 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.000 1.000 43 H -0.005 1.005 44 H 0.263 0.737 45 H 0.139 0.861 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 2.336 -9.005 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.037 4.037 3 C -0.206 4.206 4 C -0.197 4.197 5 C -0.017 4.017 6 C -0.159 4.159 7 C -0.046 4.046 8 C -0.777 4.777 9 S 2.805 3.195 10 O -0.980 6.980 11 O -0.973 6.973 12 N -0.869 5.869 13 C -0.004 4.004 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.052 4.052 25 C -0.169 4.169 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.157 0.843 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.828 2.624 -8.223 25.344 hybrid contribution 1.262 -0.350 -0.435 1.380 sum -22.566 2.274 -8.658 24.277 Atomic orbital electron populations 1.21897 0.92142 1.02782 1.02651 1.19722 0.96818 0.95514 0.91622 1.22021 1.01293 0.94364 1.02942 1.21912 1.00927 1.00698 0.96160 1.20539 0.92380 0.93875 0.94899 1.21390 1.01705 0.94777 0.98018 1.21138 0.91514 1.00171 0.91769 1.30645 1.16421 1.07376 1.23230 1.00997 0.71984 0.72654 0.73900 1.93543 1.84818 1.60795 1.58870 1.93536 1.63227 1.55338 1.85245 1.55253 1.25353 1.18289 1.87976 1.21336 0.85078 0.93334 1.00627 1.21624 0.92543 0.98549 1.01632 1.18979 0.92489 0.94751 0.95321 1.21675 0.93019 0.96871 1.46600 0.92029 1.25941 1.02860 0.96098 0.94868 1.70081 1.26503 1.12535 1.48102 0.85545 0.78232 0.78550 0.78981 1.19136 1.21002 1.19379 1.21150 0.94964 0.92255 0.96873 1.21590 0.99262 1.01807 0.94201 0.92846 0.90601 0.91775 0.92463 0.90779 0.91980 0.91744 0.90590 0.93299 0.82754 0.83173 0.73705 0.91096 0.91145 0.92194 0.91397 0.98154 0.98616 0.92806 0.84308 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.29 71.98 0.60 -0.82 16 2 C -0.04 -0.47 0.85 -52.93 -0.05 -0.52 16 3 C -0.15 -1.77 7.13 71.98 0.51 -1.25 16 4 C -0.14 -1.65 8.29 71.98 0.60 -1.05 16 5 C -0.02 -0.30 4.76 -19.86 -0.09 -0.39 16 6 C -0.14 -2.49 8.71 22.27 0.19 -2.29 16 7 C -0.03 -0.56 9.52 22.27 0.21 -0.35 16 8 C -0.69 -16.96 5.95 22.27 0.13 -16.83 16 9 S 2.71 75.22 5.74 -56.49 -0.32 74.90 16 10 O -0.99 -33.72 16.75 -128.00 -2.14 -35.86 16 11 O -0.98 -29.91 17.28 -128.00 -2.21 -32.12 16 12 N -1.11 -29.41 6.00 -187.50 -1.12 -30.53 16 13 C 0.12 3.88 6.22 86.38 0.54 4.42 16 14 C -0.10 -3.98 5.29 30.59 0.16 -3.82 16 15 C 0.02 1.14 4.97 29.85 0.15 1.29 16 16 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 20 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C -0.03 -0.80 9.52 22.27 0.21 -0.59 16 25 C -0.15 -3.05 8.98 22.27 0.20 -2.85 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.60 7.39 -2.39 -0.02 0.58 16 29 H 0.06 0.75 7.52 -2.39 -0.02 0.73 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.72 7.51 -2.39 -0.02 0.70 16 32 H 0.06 0.69 7.39 -2.39 -0.02 0.67 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.15 1.87 7.10 -2.91 -0.02 1.85 16 36 H 0.15 2.72 7.62 -2.91 -0.02 2.70 16 37 H 0.43 9.62 8.65 -96.74 -0.84 8.78 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.07 2.34 7.75 -2.39 -0.02 2.32 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.14 3.31 7.62 -2.91 -0.02 3.28 16 46 H 0.15 2.50 5.90 -2.91 -0.02 2.48 16 Total: -1.00 -71.58 384.88 0.69 -70.89 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.12 Total: 17.17 kcal Atomic # 6 Polarization: -58.60 SS G_CDS: 4.06 Total: -54.54 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -0.84 Total: -86.13 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -4.36 Total: -67.98 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 75.22 SS G_CDS: -0.32 Total: 74.90 kcal Total: -71.58 0.69 -70.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171714184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.022 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds