Wall clock time and date at job start Tue Mar 31 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47296 * 175.50261 * 3 2 1 5 5 H 1.08997 * 109.46601 * 305.22152 * 4 3 2 6 6 N 1.46502 * 109.46859 * 185.21846 * 4 3 2 7 7 S 1.65600 * 119.99419 * 96.38208 * 6 4 3 8 8 O 1.42102 * 104.27367 * 181.16170 * 7 6 4 9 9 O 1.42095 * 104.28263 * 309.02015 * 7 6 4 10 10 C 1.81401 * 104.44906 * 65.09660 * 7 6 4 11 11 C 1.53008 * 109.46896 * 179.97438 * 10 7 6 12 12 C 1.52997 * 109.46972 * 179.97438 * 11 10 7 13 13 C 1.50703 * 109.47105 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99932 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00089 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99995 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47071 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47453 * 119.99426 * 17 15 13 20 20 H 1.48502 * 109.47015 * 239.99859 * 17 15 13 21 21 C 1.50703 * 109.46659 * 65.21977 * 4 3 2 22 22 C 1.38232 * 119.99920 * 79.73274 * 21 4 3 23 23 C 1.38238 * 119.99633 * 179.80611 * 22 21 4 24 24 C 1.38234 * 120.00203 * 0.39295 * 23 22 21 25 25 C 1.38232 * 119.99763 * 359.86162 * 24 23 22 26 26 C 1.38235 * 120.00434 * 359.95002 * 25 24 23 27 27 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47200 * 300.00238 * 1 2 3 29 29 H 1.08994 * 109.46898 * 60.00003 * 1 2 3 30 30 H 1.09003 * 109.46991 * 119.99858 * 2 1 3 31 31 H 1.08997 * 109.46881 * 239.99708 * 2 1 3 32 32 H 1.09006 * 109.46737 * 295.50507 * 3 2 1 33 33 H 1.08998 * 109.47284 * 55.49798 * 3 2 1 34 34 H 0.96994 * 120.00025 * 276.37371 * 6 4 3 35 35 H 1.09000 * 109.46804 * 299.98857 * 10 7 6 36 36 H 1.08989 * 109.47794 * 59.99768 * 10 7 6 37 37 H 1.09000 * 109.46674 * 299.99599 * 11 10 7 38 38 H 1.09000 * 109.47500 * 59.99481 * 11 10 7 39 39 H 1.09000 * 109.47129 * 299.99364 * 12 11 10 40 40 H 1.09000 * 109.47396 * 59.99461 * 12 11 10 41 41 H 0.97006 * 119.99768 * 180.02562 * 16 15 13 42 42 H 1.08004 * 119.99950 * 359.97438 * 22 21 4 43 43 H 1.08001 * 119.99820 * 180.22797 * 23 22 21 44 44 H 1.07996 * 120.00122 * 179.83074 * 24 23 22 45 45 H 1.08005 * 119.99808 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00228 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5659 1.4440 0.1131 5 1 3.8655 0.8738 0.9924 6 7 4.0448 2.8228 0.2385 7 16 4.3606 3.4566 1.7355 8 8 4.7693 4.7918 1.4716 9 8 3.1852 3.1851 2.4862 10 6 5.7541 2.4758 2.3575 11 6 6.1448 2.9716 3.7513 12 6 7.3196 2.1439 4.2762 13 6 7.7040 2.6318 5.6493 14 1 7.1646 3.4506 6.1020 15 6 8.7450 2.0335 6.3270 16 7 9.4022 1.0367 5.7755 17 14 9.2220 2.6388 8.0287 18 1 8.3345 3.7629 8.4210 19 1 9.0790 1.5303 9.0065 20 1 10.6319 3.1046 8.0111 21 6 4.1616 0.8154 -1.1203 22 6 4.2764 1.5517 -2.2845 23 6 4.8265 0.9763 -3.4147 24 6 5.2542 -0.3378 -3.3829 25 6 5.1346 -1.0756 -2.2202 26 6 4.5881 -0.4991 -1.0888 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.7439 1.9325 -0.9276 33 1 1.6124 1.9791 0.8469 34 1 4.1771 3.3644 -0.5552 35 1 5.4637 1.4266 2.4130 36 1 6.6035 2.5826 1.6830 37 1 6.4352 4.0207 3.6955 38 1 5.2955 2.8651 4.4262 39 1 7.0288 1.0949 4.3321 40 1 8.1690 2.2499 3.6015 41 1 10.1344 0.6156 6.2525 42 1 3.9388 2.5773 -2.3104 43 1 4.9195 1.5527 -4.3233 44 1 5.6815 -0.7881 -4.2667 45 1 5.4684 -2.1025 -2.1954 46 1 4.4950 -1.0755 -0.1803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171954815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:48 Heat of formation + Delta-G solvation = -101.510266 kcal Electronic energy + Delta-G solvation = -25541.186278 eV Core-core repulsion = 21941.705510 eV Total energy + Delta-G solvation = -3599.480768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59837 -38.26110 -37.51752 -37.04188 -36.48049 -34.61773 -34.17423 -31.91433 -31.58416 -29.67489 -28.87614 -25.65122 -24.87724 -23.62686 -22.58146 -22.41171 -21.37667 -20.35295 -18.95128 -18.60382 -17.94743 -17.16009 -17.13325 -16.50135 -16.36644 -16.33179 -15.68307 -15.67929 -15.49611 -14.90350 -14.51279 -14.25492 -14.09820 -14.05574 -13.81934 -13.54466 -13.29195 -13.24625 -13.18319 -13.11205 -12.97519 -12.78418 -12.65496 -12.59863 -12.51319 -12.17823 -12.06406 -11.83235 -11.76586 -11.74688 -11.41639 -11.35370 -11.12589 -10.58480 -10.46098 -9.76670 -9.60900 -8.23222 -6.34212 -0.77186 0.44662 0.54711 1.39411 1.40153 1.53438 1.74126 2.39465 2.70963 2.92164 3.10366 3.19765 3.56989 3.71405 3.85735 3.87028 4.04572 4.15798 4.18051 4.22362 4.29824 4.35101 4.37658 4.54474 4.63681 4.66504 4.73262 4.80029 4.89615 4.94493 5.00140 5.05131 5.10812 5.13234 5.20831 5.30703 5.39499 5.44855 5.50378 5.61448 5.61878 5.67858 5.71211 5.78872 6.04207 6.14769 6.19037 6.81522 7.35244 8.88443 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.003050 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.508867 B = 9176.841243 C = 9862.709867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.189 3.811 5 H 0.096 0.904 6 N -1.103 6.103 7 S 2.629 3.371 8 O -0.991 6.991 9 O -0.981 6.981 10 C -0.612 4.612 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.552 4.552 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.121 4.121 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.424 0.576 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.004 0.996 40 H 0.001 0.999 41 H 0.265 0.735 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 -4.255 -20.781 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.170 4.170 4 C 0.082 3.918 5 H 0.114 0.886 6 N -0.864 5.864 7 S 2.724 3.276 8 O -0.982 6.982 9 O -0.970 6.970 10 C -0.742 4.742 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.590 4.590 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.094 4.094 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.140 4.140 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.262 0.738 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.367 -3.724 -20.194 25.062 hybrid contribution 1.132 -0.150 0.526 1.258 sum -13.234 -3.874 -19.668 24.021 Atomic orbital electron populations 1.21758 0.95299 1.02066 1.01783 1.21512 0.96450 0.95523 1.02563 1.22121 0.93075 0.98509 1.03327 1.19868 0.94420 0.80464 0.97069 0.88616 1.55523 1.82561 1.22990 1.25287 1.04292 0.75821 0.74010 0.73469 1.93537 1.84768 1.35725 1.84120 1.93546 1.45494 1.85919 1.72073 1.30528 1.19902 1.16129 1.07674 1.21311 1.00557 1.00440 0.92168 1.18959 0.92385 0.94588 0.94769 1.21766 1.16451 1.17792 1.02956 0.92162 1.25934 0.96145 0.95055 1.02416 1.70083 1.22551 1.24530 1.39782 0.85427 0.78204 0.78559 0.79065 1.18771 1.20152 1.20266 1.19877 0.99880 0.94774 0.94881 1.21118 0.99773 1.00389 0.92567 1.21411 0.98375 0.95705 0.98780 1.21482 0.99603 0.94698 0.98753 1.21411 0.99031 1.00921 0.92996 1.21253 0.98590 0.94590 0.99558 0.91948 0.93195 0.92455 0.91752 0.91124 0.90531 0.91384 0.73845 0.83797 0.83911 0.91650 0.91327 0.97764 0.98033 0.92638 0.85035 0.84267 0.84359 0.84507 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.12 -1.95 5.54 30.60 0.17 -1.78 16 3 C -0.13 -2.40 4.99 30.60 0.15 -2.24 16 4 C 0.19 3.55 2.35 44.25 0.10 3.65 16 5 H 0.10 1.74 7.03 -2.39 -0.02 1.73 16 6 N -1.10 -22.55 5.30 -172.51 -0.91 -23.46 16 7 S 2.63 74.70 5.37 -56.49 -0.30 74.40 16 8 O -0.99 -34.17 18.08 -127.65 -2.31 -36.48 16 9 O -0.98 -32.78 17.19 -127.65 -2.19 -34.97 16 10 C -0.61 -18.55 5.97 71.98 0.43 -18.12 16 11 C -0.11 -4.31 5.16 30.60 0.16 -4.15 16 12 C 0.03 1.62 4.97 29.85 0.15 1.77 16 13 C -0.55 -31.48 9.11 25.60 0.23 -31.25 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 0.15 5.46 84.65 0.46 0.62 16 16 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 17 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C -0.09 -1.60 4.25 -19.86 -0.08 -1.68 16 22 C -0.12 -1.88 9.16 22.27 0.20 -1.68 16 23 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 24 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 25 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 26 C -0.12 -2.03 8.90 22.27 0.20 -1.83 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.05 7.05 -2.39 -0.02 1.03 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.50 7.51 -2.39 -0.02 1.48 16 34 H 0.42 7.04 7.08 -96.75 -0.68 6.35 16 35 H 0.14 3.79 7.47 -2.39 -0.02 3.77 16 36 H 0.14 3.93 8.14 -2.40 -0.02 3.91 16 37 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 42 H 0.13 1.67 6.83 -2.91 -0.02 1.65 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 46 H 0.13 1.94 8.04 -2.91 -0.02 1.91 16 Total: -1.00 -73.73 388.65 0.42 -73.32 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.27 Total: 19.41 kcal Atomic # 6 Polarization: -66.58 SS G_CDS: 3.56 Total: -63.02 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -0.63 Total: -78.93 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -4.50 Total: -71.45 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 74.70 SS G_CDS: -0.30 Total: 74.40 kcal Total: -73.73 0.42 -73.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171954815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.195 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds