Wall clock time and date at job start Tue Mar 31 2020 15:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 C 1.52994 * 109.47264 * 184.53299 * 3 2 1 5 5 H 1.09000 * 109.47344 * 305.46100 * 4 3 2 6 6 N 1.46502 * 109.47029 * 65.45850 * 4 3 2 7 7 S 1.65600 * 119.99854 * 214.95594 * 6 4 3 8 8 O 1.42102 * 104.28178 * 307.28493 * 7 6 4 9 9 O 1.42100 * 104.27571 * 179.42968 * 7 6 4 10 10 C 1.81401 * 104.44889 * 63.36141 * 7 6 4 11 11 C 1.53000 * 109.47124 * 175.04267 * 10 7 6 12 12 C 1.53011 * 109.46850 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.46822 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00370 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99826 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00280 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00000 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46834 * 90.00240 * 17 15 13 19 19 H 1.48499 * 109.47222 * 210.00004 * 17 15 13 20 20 H 1.48500 * 109.47197 * 330.00215 * 17 15 13 21 21 C 1.50698 * 109.47341 * 185.45539 * 4 3 2 22 22 C 1.38233 * 120.00640 * 279.73090 * 21 4 3 23 23 C 1.38234 * 120.00601 * 179.78708 * 22 21 4 24 24 C 1.38240 * 119.99458 * 0.43929 * 23 22 21 25 25 C 1.38227 * 120.00244 * 359.80974 * 24 23 22 26 26 C 1.38237 * 120.00085 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47637 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46775 * 300.00187 * 1 2 3 29 29 H 1.09005 * 109.47317 * 59.99851 * 1 2 3 30 30 H 1.08999 * 109.47020 * 240.00271 * 2 1 3 31 31 H 1.08995 * 109.47160 * 120.00270 * 2 1 3 32 32 H 1.08998 * 109.47201 * 64.53193 * 3 2 1 33 33 H 1.09006 * 109.47267 * 304.53672 * 3 2 1 34 34 H 0.96996 * 120.00148 * 34.96081 * 6 4 3 35 35 H 1.09009 * 109.46908 * 295.03717 * 10 7 6 36 36 H 1.09003 * 109.47397 * 55.03474 * 10 7 6 37 37 H 1.08995 * 109.46876 * 299.99379 * 11 10 7 38 38 H 1.08993 * 109.47578 * 59.99898 * 11 10 7 39 39 H 1.08995 * 109.47037 * 299.99480 * 12 11 10 40 40 H 1.08999 * 109.46552 * 59.99761 * 12 11 10 41 41 H 0.97002 * 120.00528 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99692 * 359.97438 * 22 21 4 43 43 H 1.07993 * 120.00320 * 180.27263 * 23 22 21 44 44 H 1.07998 * 119.99828 * 179.83468 * 24 23 22 45 45 H 1.08000 * 120.00517 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00469 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 -0.1140 5 1 3.9898 0.8263 0.6776 6 7 3.9585 0.9040 -1.4180 7 16 5.3370 -0.0029 -1.5575 8 8 6.3489 0.8052 -0.9725 9 8 5.3860 -0.3568 -2.9328 10 6 5.0209 -1.4671 -0.5344 11 6 6.1834 -2.4512 -0.6793 12 6 5.9170 -3.6860 0.1842 13 6 7.0617 -4.6556 0.0409 14 1 7.8960 -4.4150 -0.6014 15 6 7.0444 -5.8493 0.7306 16 7 6.0288 -6.1420 1.5131 17 14 8.4638 -7.0509 0.5536 18 1 9.4926 -6.7567 1.5832 19 1 7.9641 -8.4374 0.7351 20 1 9.0629 -6.9136 -0.7982 21 6 4.0781 2.8547 0.0205 22 6 4.0361 3.7118 -1.0633 23 6 4.5021 5.0072 -0.9387 24 6 5.0186 5.4429 0.2673 25 6 5.0654 4.5844 1.3497 26 6 4.5952 3.2903 1.2263 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.7445 1.9323 0.9278 33 1 1.6118 1.9793 -0.8466 34 1 3.4111 1.0779 -2.1997 35 1 4.9265 -1.1675 0.5095 36 1 4.0971 -1.9454 -0.8600 37 1 6.2777 -2.7509 -1.7230 38 1 7.1071 -1.9730 -0.3537 39 1 5.8229 -3.3861 1.2278 40 1 4.9932 -4.1643 -0.1412 41 1 6.0165 -6.9820 1.9981 42 1 3.6364 3.3701 -2.0066 43 1 4.4652 5.6780 -1.7842 44 1 5.3851 6.4541 0.3640 45 1 5.4692 4.9246 2.2918 46 1 4.6321 2.6194 2.0718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171954819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:52 Heat of formation + Delta-G solvation = -79.904188 kcal Electronic energy + Delta-G solvation = -25686.524002 eV Core-core repulsion = 22087.980144 eV Total energy + Delta-G solvation = -3598.543858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.72440 -37.07634 -36.76535 -35.70954 -34.68351 -33.57120 -32.19616 -31.23902 -30.84612 -28.18109 -27.82295 -24.27772 -23.76778 -22.71892 -21.53234 -20.98743 -20.65759 -19.21141 -17.53839 -17.27650 -16.54517 -16.34227 -15.73891 -15.51269 -15.29595 -14.96380 -14.70285 -14.48585 -14.20346 -13.89436 -13.64563 -13.47882 -12.89086 -12.80304 -12.61028 -12.30579 -12.18914 -11.92136 -11.89439 -11.79434 -11.74783 -11.52812 -11.39114 -11.23057 -11.13489 -11.09772 -10.92919 -10.84240 -10.82996 -10.42406 -9.96008 -9.77604 -9.34449 -9.10653 -8.99513 -8.81350 -8.41386 -6.06401 -4.09360 0.46266 1.23766 1.32368 2.84514 3.30117 3.36261 3.40469 3.67298 3.94236 4.30780 4.42057 4.45927 4.62051 4.70390 4.83580 4.86655 4.90030 5.00766 5.05185 5.09285 5.18062 5.28388 5.30373 5.37890 5.40747 5.42796 5.59990 5.66724 5.70052 5.87069 5.87272 5.92072 5.94157 6.04979 6.13254 6.25954 6.35083 6.40895 6.43799 6.52296 6.85182 6.88881 6.90401 7.56029 7.66027 7.91635 8.32268 8.96836 9.55444 11.04788 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.003077 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.158356 B = 9097.513000 C = 9798.087650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C -0.117 4.117 4 C 0.193 3.807 5 H 0.094 0.906 6 N -1.116 6.116 7 S 2.595 3.405 8 O -0.955 6.955 9 O -0.963 6.963 10 C -0.610 4.610 11 C -0.105 4.105 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.092 4.092 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.106 4.106 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.261 0.739 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 21.272 -1.719 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C -0.156 4.156 4 C 0.086 3.914 5 H 0.112 0.888 6 N -0.873 5.873 7 S 2.691 3.309 8 O -0.944 6.944 9 O -0.954 6.954 10 C -0.742 4.742 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.125 4.125 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.249 0.751 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.257 21.352 -1.977 23.770 hybrid contribution 0.092 -0.973 0.105 0.983 sum -10.165 20.379 -1.871 22.850 Atomic orbital electron populations 1.21750 0.95641 1.01894 1.01579 1.21626 0.96136 0.96199 1.03054 1.21910 0.92611 0.97859 1.03265 1.19681 0.95897 0.91108 0.84729 0.88841 1.55864 1.46763 1.68932 1.15698 1.05503 0.73513 0.76376 0.75548 1.93598 1.55613 1.65588 1.79639 1.93577 1.85569 1.84761 1.31475 1.30575 1.10324 1.18006 1.15252 1.21494 0.93134 0.97064 1.02767 1.19054 0.97401 0.89900 0.94312 1.21256 1.05454 1.02488 1.27269 0.92382 1.25011 0.96079 0.98122 0.95125 1.69951 1.30317 1.24094 1.29067 0.86563 0.82395 0.80265 0.78643 1.20560 1.21169 1.19726 1.20170 0.99290 0.95725 0.94170 1.20879 0.99526 0.93346 0.98171 1.21116 0.99327 0.96044 0.97633 1.21132 0.99863 0.99667 0.93381 1.21105 0.99843 0.93920 0.98852 1.21021 0.98058 0.96215 0.97160 0.92501 0.92819 0.92872 0.91320 0.91319 0.90387 0.90976 0.75149 0.85591 0.85225 0.91476 0.91737 0.96144 0.96112 0.92903 0.86323 0.86272 0.86334 0.86063 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.06 5.88 -26.73 -0.16 -1.22 16 3 C -0.12 -0.88 4.79 -26.74 -0.13 -1.01 16 4 C 0.19 1.85 2.28 -69.09 -0.16 1.70 16 5 H 0.09 0.86 7.00 -51.93 -0.36 0.50 16 6 N -1.12 -11.68 4.05 -5.88 -0.02 -11.70 16 7 S 2.59 38.22 5.38 -107.50 -0.58 37.64 16 8 O -0.95 -17.01 17.83 -57.54 -1.03 -18.03 16 9 O -0.96 -17.05 18.08 -57.54 -1.04 -18.09 16 10 C -0.61 -9.22 5.86 37.16 0.22 -9.00 16 11 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 12 C 0.03 0.79 4.97 -27.88 -0.14 0.66 16 13 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.09 -0.99 4.94 -104.62 -0.52 -1.51 16 22 C -0.10 -1.06 9.33 -39.58 -0.37 -1.43 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16 26 C -0.11 -1.13 9.67 -39.58 -0.38 -1.51 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.41 3.46 8.60 -34.47 -0.30 3.16 16 35 H 0.13 1.67 7.51 -51.92 -0.39 1.28 16 36 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.12 1.07 7.55 -52.49 -0.40 0.67 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 1.11 8.04 -52.49 -0.42 0.69 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -35.45 393.10 -11.76 -47.21 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.73 Total: 0.89 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: -3.01 Total: -34.68 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.71 Total: -37.40 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -2.07 Total: -36.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 38.22 SS G_CDS: -0.58 Total: 37.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.45 -11.76 -47.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171954819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.695 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds