Wall clock time and date at job start Tue Mar 31 2020 15:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 C 1.52994 * 109.47264 * 184.53299 * 3 2 1 5 5 H 1.09000 * 109.47344 * 305.46100 * 4 3 2 6 6 N 1.46502 * 109.47029 * 65.45850 * 4 3 2 7 7 S 1.65600 * 119.99854 * 214.95594 * 6 4 3 8 8 O 1.42102 * 104.28178 * 307.28493 * 7 6 4 9 9 O 1.42100 * 104.27571 * 179.42968 * 7 6 4 10 10 C 1.81401 * 104.44889 * 63.36141 * 7 6 4 11 11 C 1.53000 * 109.47124 * 175.04267 * 10 7 6 12 12 C 1.53011 * 109.46850 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.46822 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00370 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99826 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00280 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00000 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46834 * 90.00240 * 17 15 13 19 19 H 1.48499 * 109.47222 * 210.00004 * 17 15 13 20 20 H 1.48500 * 109.47197 * 330.00215 * 17 15 13 21 21 C 1.50698 * 109.47341 * 185.45539 * 4 3 2 22 22 C 1.38233 * 120.00640 * 279.73090 * 21 4 3 23 23 C 1.38234 * 120.00601 * 179.78708 * 22 21 4 24 24 C 1.38240 * 119.99458 * 0.43929 * 23 22 21 25 25 C 1.38227 * 120.00244 * 359.80974 * 24 23 22 26 26 C 1.38237 * 120.00085 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47637 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46775 * 300.00187 * 1 2 3 29 29 H 1.09005 * 109.47317 * 59.99851 * 1 2 3 30 30 H 1.08999 * 109.47020 * 240.00271 * 2 1 3 31 31 H 1.08995 * 109.47160 * 120.00270 * 2 1 3 32 32 H 1.08998 * 109.47201 * 64.53193 * 3 2 1 33 33 H 1.09006 * 109.47267 * 304.53672 * 3 2 1 34 34 H 0.96996 * 120.00148 * 34.96081 * 6 4 3 35 35 H 1.09009 * 109.46908 * 295.03717 * 10 7 6 36 36 H 1.09003 * 109.47397 * 55.03474 * 10 7 6 37 37 H 1.08995 * 109.46876 * 299.99379 * 11 10 7 38 38 H 1.08993 * 109.47578 * 59.99898 * 11 10 7 39 39 H 1.08995 * 109.47037 * 299.99480 * 12 11 10 40 40 H 1.08999 * 109.46552 * 59.99761 * 12 11 10 41 41 H 0.97002 * 120.00528 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99692 * 359.97438 * 22 21 4 43 43 H 1.07993 * 120.00320 * 180.27263 * 23 22 21 44 44 H 1.07998 * 119.99828 * 179.83468 * 24 23 22 45 45 H 1.08000 * 120.00517 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00469 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 -0.1140 5 1 3.9898 0.8263 0.6776 6 7 3.9585 0.9040 -1.4180 7 16 5.3370 -0.0029 -1.5575 8 8 6.3489 0.8052 -0.9725 9 8 5.3860 -0.3568 -2.9328 10 6 5.0209 -1.4671 -0.5344 11 6 6.1834 -2.4512 -0.6793 12 6 5.9170 -3.6860 0.1842 13 6 7.0617 -4.6556 0.0409 14 1 7.8960 -4.4150 -0.6014 15 6 7.0444 -5.8493 0.7306 16 7 6.0288 -6.1420 1.5131 17 14 8.4638 -7.0509 0.5536 18 1 9.4926 -6.7567 1.5832 19 1 7.9641 -8.4374 0.7351 20 1 9.0629 -6.9136 -0.7982 21 6 4.0781 2.8547 0.0205 22 6 4.0361 3.7118 -1.0633 23 6 4.5021 5.0072 -0.9387 24 6 5.0186 5.4429 0.2673 25 6 5.0654 4.5844 1.3497 26 6 4.5952 3.2903 1.2263 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.7445 1.9323 0.9278 33 1 1.6118 1.9793 -0.8466 34 1 3.4111 1.0779 -2.1997 35 1 4.9265 -1.1675 0.5095 36 1 4.0971 -1.9454 -0.8600 37 1 6.2777 -2.7509 -1.7230 38 1 7.1071 -1.9730 -0.3537 39 1 5.8229 -3.3861 1.2278 40 1 4.9932 -4.1643 -0.1412 41 1 6.0165 -6.9820 1.9981 42 1 3.6364 3.3701 -2.0066 43 1 4.4652 5.6780 -1.7842 44 1 5.3851 6.4541 0.3640 45 1 5.4692 4.9246 2.2918 46 1 4.6321 2.6194 2.0718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171954819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:51 Heat of formation + Delta-G solvation = -101.987815 kcal Electronic energy + Delta-G solvation = -25687.481620 eV Core-core repulsion = 22087.980144 eV Total energy + Delta-G solvation = -3599.501476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46108 -38.18834 -37.70847 -37.03222 -36.47330 -34.29340 -34.15508 -32.01125 -31.59979 -29.66520 -28.85287 -25.64663 -24.97417 -23.48453 -22.45953 -22.13327 -21.71749 -20.36320 -18.73757 -18.54453 -18.02668 -17.30234 -17.09894 -16.54633 -16.44644 -16.13515 -15.77571 -15.60290 -15.41980 -14.61410 -14.50015 -14.35635 -14.18037 -14.07867 -13.69021 -13.57134 -13.52888 -13.19891 -13.11422 -12.99409 -12.85427 -12.75613 -12.66429 -12.59860 -12.27934 -12.20884 -12.03662 -11.84113 -11.78403 -11.75024 -11.43629 -11.37495 -11.10641 -10.57365 -10.46082 -9.74407 -9.56244 -8.22741 -6.33497 -0.75302 0.48774 0.57499 1.40125 1.40569 1.52000 1.77935 2.39659 2.73845 2.92701 3.10859 3.23421 3.65366 3.72643 3.87641 3.93044 4.02419 4.17688 4.21339 4.24623 4.33988 4.38023 4.40681 4.50331 4.65158 4.70407 4.73208 4.78031 4.91923 5.00846 5.01579 5.06360 5.09222 5.16810 5.22877 5.34729 5.42371 5.45376 5.53696 5.62337 5.63357 5.68063 5.76410 5.79522 6.11098 6.18461 6.20004 6.81910 7.35769 8.88611 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.003077 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.158356 B = 9097.513000 C = 9798.087650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C -0.107 4.107 4 C 0.189 3.811 5 H 0.097 0.903 6 N -1.099 6.099 7 S 2.622 3.378 8 O -0.985 6.985 9 O -0.993 6.993 10 C -0.609 4.609 11 C -0.106 4.106 12 C 0.033 3.967 13 C -0.553 4.553 14 H 0.059 0.941 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.961 3.039 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.126 4.126 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.427 0.573 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.265 0.735 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 22.190 -1.912 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.146 4.146 4 C 0.082 3.918 5 H 0.115 0.885 6 N -0.859 5.859 7 S 2.718 3.282 8 O -0.974 6.974 9 O -0.983 6.983 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.005 4.005 13 C -0.591 4.591 14 H 0.077 0.923 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.107 4.107 22 C -0.136 4.136 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.144 4.144 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.264 0.736 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.532 22.273 -2.182 24.734 hybrid contribution 0.127 -1.187 0.195 1.209 sum -10.406 21.087 -1.987 23.598 Atomic orbital electron populations 1.21743 0.95125 1.01730 1.02224 1.21670 0.96654 0.96444 1.02719 1.21842 0.90841 0.97698 1.04224 1.19888 0.97336 0.90714 0.83900 0.88527 1.55421 1.45752 1.67801 1.16960 1.04442 0.73681 0.75870 0.74227 1.93562 1.57624 1.66254 1.79981 1.93532 1.86351 1.85267 1.33186 1.30522 1.09078 1.17395 1.17033 1.21300 0.95278 0.96364 1.01530 1.18941 0.95847 0.91482 0.94226 1.21740 1.06412 1.03591 1.27396 0.92315 1.25903 0.98767 1.00031 0.94710 1.70059 1.32147 1.24795 1.29819 0.85509 0.79122 0.77870 0.78966 1.19718 1.20493 1.18976 1.20331 0.99718 0.96178 0.94473 1.21143 0.99988 0.93817 0.98657 1.21442 0.98990 0.96266 0.98473 1.21464 0.99540 1.00686 0.93216 1.21418 0.99683 0.93866 0.99850 1.21300 0.98498 0.96956 0.97674 0.93093 0.92281 0.92156 0.91573 0.91821 0.89473 0.89900 0.73597 0.83695 0.83270 0.91658 0.91817 0.97753 0.97752 0.92622 0.85249 0.84478 0.84307 0.84404 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.14 -1.98 5.88 30.59 0.18 -1.80 16 3 C -0.11 -1.39 4.79 30.59 0.15 -1.24 16 4 C 0.19 3.32 2.28 44.24 0.10 3.42 16 5 H 0.10 1.64 7.00 -2.39 -0.02 1.62 16 6 N -1.10 -21.32 4.05 -172.53 -0.70 -22.02 16 7 S 2.62 74.95 5.38 -56.49 -0.30 74.64 16 8 O -0.98 -34.49 17.83 -127.65 -2.28 -36.77 16 9 O -0.99 -34.44 18.08 -127.65 -2.31 -36.75 16 10 C -0.61 -17.94 5.86 71.98 0.42 -17.51 16 11 C -0.11 -4.28 5.16 30.60 0.16 -4.12 16 12 C 0.03 1.70 4.97 29.85 0.15 1.85 16 13 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 15 C 0.00 0.24 5.46 84.65 0.46 0.71 16 16 N -0.93 -55.32 13.29 21.44 0.28 -55.04 16 17 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C -0.11 -2.14 4.94 -19.87 -0.10 -2.24 16 22 C -0.12 -2.31 9.33 22.27 0.21 -2.11 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 24 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 25 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 26 C -0.13 -2.55 9.67 22.27 0.22 -2.33 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.43 6.33 8.60 -96.75 -0.83 5.50 16 35 H 0.14 3.69 7.51 -2.39 -0.02 3.67 16 36 H 0.15 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.13 2.11 7.55 -2.91 -0.02 2.09 16 43 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.13 2.28 8.04 -2.91 -0.02 2.26 16 Total: -1.00 -75.64 393.10 0.40 -75.25 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.11 Total: 18.92 kcal Atomic # 6 Polarization: -67.96 SS G_CDS: 3.56 Total: -64.40 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -0.41 Total: -77.05 kcal Atomic # 8 Polarization: -68.93 SS G_CDS: -4.58 Total: -73.52 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 74.95 SS G_CDS: -0.30 Total: 74.64 kcal Total: -75.64 0.40 -75.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171954819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.743 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds