Wall clock time and date at job start Tue Mar 31 2020 14:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 C 1.53004 * 109.47014 * 305.42767 * 3 2 1 5 5 C 1.52995 * 109.47004 * 294.93445 * 4 3 2 6 6 C 1.52998 * 109.47490 * 65.43189 * 3 2 1 7 7 N 1.46497 * 109.47216 * 64.99763 * 6 3 2 8 8 C 1.46506 * 119.99824 * 90.00329 * 7 6 3 9 9 C 1.50702 * 109.47063 * 94.35720 * 8 7 6 10 10 H 1.08002 * 120.00135 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00029 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00099 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47398 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47018 * 120.00236 * 13 11 9 16 16 H 1.48505 * 109.47284 * 240.00157 * 13 11 9 17 17 C 1.34776 * 120.00483 * 270.00047 * 7 6 3 18 18 O 1.21713 * 119.99552 * 5.45574 * 17 7 6 19 19 C 1.46539 * 120.00284 * 185.45374 * 17 7 6 20 20 C 1.36746 * 125.42727 * 186.43770 * 19 17 7 21 21 C 1.37721 * 113.25785 * 179.97438 * 20 19 17 22 22 O 1.36210 * 122.50099 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00387 * 179.97438 * 22 21 20 24 24 C 1.34079 * 115.00159 * 0.02562 * 21 20 19 25 25 S 1.70600 * 110.97349 * 359.72257 * 24 21 20 26 26 H 1.09000 * 109.47338 * 186.09440 * 1 2 3 27 27 H 1.09001 * 109.47328 * 306.10176 * 1 2 3 28 28 H 1.09004 * 109.46770 * 66.09723 * 1 2 3 29 29 H 1.08998 * 109.47740 * 239.99662 * 2 1 3 30 30 H 1.09011 * 109.46924 * 119.99377 * 2 1 3 31 31 H 1.09007 * 109.47153 * 185.42660 * 3 2 1 32 32 H 1.08995 * 109.46783 * 54.93316 * 4 3 2 33 33 H 1.08997 * 109.46860 * 174.93211 * 4 3 2 34 34 H 1.08994 * 109.47244 * 65.18984 * 5 4 3 35 35 H 1.09000 * 109.46967 * 185.19176 * 5 4 3 36 36 H 1.09004 * 109.47222 * 305.18754 * 5 4 3 37 37 H 1.09007 * 109.46994 * 304.99974 * 6 3 2 38 38 H 1.09003 * 109.47299 * 185.00188 * 6 3 2 39 39 H 1.08994 * 109.46818 * 214.35537 * 8 7 6 40 40 H 1.08998 * 109.47251 * 334.35910 * 8 7 6 41 41 H 0.96997 * 120.00013 * 180.02562 * 12 11 9 42 42 H 1.08000 * 123.36918 * 0.02926 * 20 19 17 43 43 H 1.09003 * 109.47097 * 60.00239 * 23 22 21 44 44 H 1.09004 * 109.47471 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.47161 * 300.00475 * 23 22 21 46 46 H 1.07999 * 124.51267 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4216 2.2020 -1.1755 5 6 1.9184 1.5985 -2.4906 6 6 1.6445 2.1233 1.3119 7 7 2.3319 1.4692 2.4280 8 6 3.6470 1.9486 2.8605 9 6 3.4771 2.9292 3.9921 10 1 2.4883 3.1715 4.3528 11 6 4.5838 3.5171 4.5670 12 7 5.7878 3.2225 4.1274 13 14 4.3731 4.7331 5.9692 14 1 2.9284 4.8918 6.2740 15 1 5.0799 4.2274 7.1733 16 1 4.9436 6.0465 5.5754 17 6 1.7545 0.4265 3.0572 18 8 0.7098 -0.0352 2.6367 19 6 2.3845 -0.1514 4.2473 20 6 1.9667 -1.2802 4.8964 21 6 2.7435 -1.5987 5.9881 22 8 2.4955 -2.6857 6.7706 23 6 3.3768 -2.9057 7.8737 24 6 3.7614 -0.7585 6.2239 25 16 3.8022 0.4920 5.0641 26 1 -0.3634 -1.0218 0.1091 27 1 -0.3634 0.6055 0.8303 28 1 -0.3633 0.4164 -0.9396 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.1257 1.4440 -0.0972 32 1 0.3355 2.1240 -1.1273 33 1 1.7132 3.2510 -1.1239 34 1 1.5488 0.5775 -2.5844 35 1 1.5522 2.1957 -3.3257 36 1 3.0084 1.5925 -2.4988 37 1 0.5665 2.0435 1.4521 38 1 1.9293 3.1748 1.2758 39 1 4.2483 1.1046 3.1983 40 1 4.1471 2.4401 2.0259 41 1 6.5664 3.6358 4.5320 42 1 1.1136 -1.8640 4.5835 43 1 3.3403 -2.0474 8.5447 44 1 3.0677 -3.8012 8.4129 45 1 4.3944 -3.0359 7.5054 46 1 4.4649 -0.8625 7.0367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176772616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:21 Heat of formation + Delta-G solvation = -51.642152 kcal Electronic energy + Delta-G solvation = -26741.940080 eV Core-core repulsion = 23144.621756 eV Total energy + Delta-G solvation = -3597.318324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.57474 -39.02722 -36.83176 -35.14341 -34.75960 -32.75818 -30.81759 -29.34932 -27.99503 -27.55797 -27.02462 -24.54995 -23.51077 -23.19175 -22.35365 -20.09252 -18.58035 -18.27151 -17.50400 -16.80661 -16.34131 -15.73351 -15.44281 -15.34941 -15.31311 -14.83170 -14.46108 -13.86921 -13.63297 -13.32473 -13.16483 -12.74706 -12.54880 -12.45091 -12.39531 -12.21676 -12.03870 -11.73043 -11.65425 -11.37911 -11.21866 -11.15409 -11.12603 -10.95587 -10.83897 -10.44962 -10.35909 -10.19563 -9.98933 -9.97795 -9.81884 -9.32636 -9.13093 -8.77763 -8.12954 -7.71511 -7.17049 -6.44794 -4.45803 1.31958 2.53897 2.97988 3.11161 3.12538 3.18761 3.23365 3.66026 3.98358 4.05102 4.17814 4.90252 5.15756 5.16350 5.24929 5.31277 5.37976 5.43527 5.54186 5.62962 5.68357 5.72606 5.75079 5.99806 5.99925 6.02409 6.07844 6.15158 6.17286 6.20179 6.37133 6.44292 6.48329 6.50042 6.55493 6.61010 6.70281 6.83580 6.87518 6.91776 6.99533 7.40118 7.52268 7.70180 7.78860 8.19775 8.55635 8.96589 9.12736 10.58213 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.005728 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.419670 B = 4887.379844 C = 7238.355996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.126 3.874 7 N -0.593 5.593 8 C 0.222 3.778 9 C -0.532 4.532 10 H 0.072 0.928 11 C 0.076 3.924 12 N -0.872 5.872 13 Si 0.889 3.111 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.588 3.412 18 O -0.551 6.551 19 C -0.271 4.271 20 C -0.097 4.097 21 C 0.077 3.923 22 O -0.321 6.321 23 C 0.037 3.963 24 C -0.436 4.436 25 S 0.423 5.577 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.271 0.729 42 H 0.142 0.858 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 -4.219 -2.516 5.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.123 4.123 4 C -0.157 4.157 5 C -0.206 4.206 6 C 0.003 3.997 7 N -0.323 5.323 8 C 0.099 3.901 9 C -0.576 4.576 10 H 0.090 0.910 11 C -0.131 4.131 12 N -0.507 5.507 13 Si 0.715 3.285 14 H -0.191 1.191 15 H -0.203 1.203 16 H -0.204 1.204 17 C 0.377 3.623 18 O -0.433 6.433 19 C -0.393 4.393 20 C -0.134 4.134 21 C 0.021 3.979 22 O -0.236 6.236 23 C -0.059 4.059 24 C -0.573 4.573 25 S 0.702 5.298 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.160 0.840 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.852 -3.371 -2.879 4.804 hybrid contribution -0.417 -0.516 1.495 1.635 sum -2.269 -3.887 -1.384 4.709 Atomic orbital electron populations 1.21751 0.95871 1.01336 1.00622 1.21475 0.96508 0.95711 1.01114 1.21613 1.00315 0.95903 0.94456 1.21550 1.00834 0.99178 0.94133 1.21763 1.01077 1.00823 0.96966 1.21449 0.97637 0.96024 0.84556 1.47972 1.21140 1.31090 1.32109 1.19693 0.78834 0.95032 0.96515 1.21603 0.94240 1.24673 1.17110 0.90962 1.24948 0.94886 0.96150 0.97098 1.69921 0.97957 1.42023 1.40832 0.86532 0.79142 0.81003 0.81776 1.19075 1.20327 1.20383 1.16888 0.84018 0.79759 0.81593 1.90721 1.23760 1.62177 1.66627 1.24548 1.07095 1.03219 1.04415 1.19496 1.01651 0.97517 0.94738 1.17431 0.96626 0.89655 0.94183 1.85985 1.53771 1.43520 1.40313 1.22832 0.93810 1.01303 0.87949 1.26770 1.06804 1.09182 1.14566 1.86317 1.18505 1.13372 1.11617 0.93964 0.91038 0.94347 0.93586 0.91426 0.91267 0.91572 0.92207 0.92718 0.93344 0.92917 0.90505 0.90516 0.93895 0.93032 0.91915 0.83980 0.93433 0.89163 0.93407 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.07 37.15 0.30 -1.83 16 2 C -0.11 -1.76 4.80 -26.74 -0.13 -1.89 16 3 C -0.10 -1.57 2.37 -90.62 -0.21 -1.79 16 4 C -0.12 -1.50 5.07 -26.73 -0.14 -1.64 16 5 C -0.15 -1.69 9.54 37.16 0.35 -1.33 16 6 C 0.13 2.19 4.88 -4.04 -0.02 2.17 16 7 N -0.59 -11.91 2.35 -176.65 -0.42 -12.32 16 8 C 0.22 4.82 4.71 -5.19 -0.02 4.79 16 9 C -0.53 -12.32 6.66 -34.44 -0.23 -12.55 16 10 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 11 C 0.08 1.78 4.88 -17.82 -0.09 1.70 16 12 N -0.87 -21.06 13.29 55.43 0.74 -20.32 16 13 Si 0.89 18.75 29.54 -169.99 -5.02 13.73 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 C 0.59 12.44 6.33 -12.91 -0.08 12.36 16 18 O -0.55 -11.94 12.19 5.18 0.06 -11.88 16 19 C -0.27 -5.66 6.20 -36.78 -0.23 -5.89 16 20 C -0.10 -1.96 10.01 -40.31 -0.40 -2.36 16 21 C 0.08 1.47 6.61 -41.23 -0.27 1.20 16 22 O -0.32 -5.61 10.56 -20.41 -0.22 -5.83 16 23 C 0.04 0.47 9.93 101.05 1.00 1.48 16 24 C -0.44 -8.16 9.81 29.27 0.29 -7.88 16 25 S 0.42 8.65 15.57 -107.50 -1.67 6.98 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.22 4.86 -51.93 -0.25 0.97 16 28 H 0.04 0.51 6.60 -51.93 -0.34 0.17 16 29 H 0.05 0.67 6.96 -51.93 -0.36 0.31 16 30 H 0.07 1.27 5.46 -51.92 -0.28 0.99 16 31 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.07 0.82 6.19 -51.93 -0.32 0.49 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.35 5.74 -51.92 -0.30 1.05 16 38 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 39 H 0.04 0.98 4.87 -25.20 -0.12 0.86 16 40 H 0.05 1.16 8.04 -51.93 -0.42 0.74 16 41 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 42 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 43 H 0.05 0.58 7.84 -51.93 -0.41 0.18 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.58 7.85 -51.93 -0.41 0.17 16 46 H 0.15 2.46 6.96 -52.49 -0.37 2.10 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -25.30 364.11 -7.78 -33.09 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.86 Total: 4.52 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 0.12 Total: -13.45 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.32 Total: -32.64 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.15 Total: -17.71 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Atomic # 16 Polarization: 8.65 SS G_CDS: -1.67 Total: 6.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -25.30 -7.78 -33.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176772616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.555 kcal (2) G-P(sol) polarization free energy of solvation -25.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds