Wall clock time and date at job start Tue Mar 31 2020 14:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 C 1.53004 * 109.47014 * 305.42767 * 3 2 1 5 5 C 1.52995 * 109.47004 * 294.93445 * 4 3 2 6 6 C 1.52998 * 109.47490 * 65.43189 * 3 2 1 7 7 N 1.46497 * 109.47216 * 64.99763 * 6 3 2 8 8 C 1.46506 * 119.99824 * 90.00329 * 7 6 3 9 9 C 1.50702 * 109.47063 * 94.35720 * 8 7 6 10 10 H 1.08002 * 120.00135 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00029 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00099 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47398 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47018 * 120.00236 * 13 11 9 16 16 H 1.48505 * 109.47284 * 240.00157 * 13 11 9 17 17 C 1.34776 * 120.00483 * 270.00047 * 7 6 3 18 18 O 1.21713 * 119.99552 * 5.45574 * 17 7 6 19 19 C 1.46539 * 120.00284 * 185.45374 * 17 7 6 20 20 C 1.36746 * 125.42727 * 186.43770 * 19 17 7 21 21 C 1.37721 * 113.25785 * 179.97438 * 20 19 17 22 22 O 1.36210 * 122.50099 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00387 * 179.97438 * 22 21 20 24 24 C 1.34079 * 115.00159 * 0.02562 * 21 20 19 25 25 S 1.70600 * 110.97349 * 359.72257 * 24 21 20 26 26 H 1.09000 * 109.47338 * 186.09440 * 1 2 3 27 27 H 1.09001 * 109.47328 * 306.10176 * 1 2 3 28 28 H 1.09004 * 109.46770 * 66.09723 * 1 2 3 29 29 H 1.08998 * 109.47740 * 239.99662 * 2 1 3 30 30 H 1.09011 * 109.46924 * 119.99377 * 2 1 3 31 31 H 1.09007 * 109.47153 * 185.42660 * 3 2 1 32 32 H 1.08995 * 109.46783 * 54.93316 * 4 3 2 33 33 H 1.08997 * 109.46860 * 174.93211 * 4 3 2 34 34 H 1.08994 * 109.47244 * 65.18984 * 5 4 3 35 35 H 1.09000 * 109.46967 * 185.19176 * 5 4 3 36 36 H 1.09004 * 109.47222 * 305.18754 * 5 4 3 37 37 H 1.09007 * 109.46994 * 304.99974 * 6 3 2 38 38 H 1.09003 * 109.47299 * 185.00188 * 6 3 2 39 39 H 1.08994 * 109.46818 * 214.35537 * 8 7 6 40 40 H 1.08998 * 109.47251 * 334.35910 * 8 7 6 41 41 H 0.96997 * 120.00013 * 180.02562 * 12 11 9 42 42 H 1.08000 * 123.36918 * 0.02926 * 20 19 17 43 43 H 1.09003 * 109.47097 * 60.00239 * 23 22 21 44 44 H 1.09004 * 109.47471 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.47161 * 300.00475 * 23 22 21 46 46 H 1.07999 * 124.51267 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4216 2.2020 -1.1755 5 6 1.9184 1.5985 -2.4906 6 6 1.6445 2.1233 1.3119 7 7 2.3319 1.4692 2.4280 8 6 3.6470 1.9486 2.8605 9 6 3.4771 2.9292 3.9921 10 1 2.4883 3.1715 4.3528 11 6 4.5838 3.5171 4.5670 12 7 5.7878 3.2225 4.1274 13 14 4.3731 4.7331 5.9692 14 1 2.9284 4.8918 6.2740 15 1 5.0799 4.2274 7.1733 16 1 4.9436 6.0465 5.5754 17 6 1.7545 0.4265 3.0572 18 8 0.7098 -0.0352 2.6367 19 6 2.3845 -0.1514 4.2473 20 6 1.9667 -1.2802 4.8964 21 6 2.7435 -1.5987 5.9881 22 8 2.4955 -2.6857 6.7706 23 6 3.3768 -2.9057 7.8737 24 6 3.7614 -0.7585 6.2239 25 16 3.8022 0.4920 5.0641 26 1 -0.3634 -1.0218 0.1091 27 1 -0.3634 0.6055 0.8303 28 1 -0.3633 0.4164 -0.9396 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.1257 1.4440 -0.0972 32 1 0.3355 2.1240 -1.1273 33 1 1.7132 3.2510 -1.1239 34 1 1.5488 0.5775 -2.5844 35 1 1.5522 2.1957 -3.3257 36 1 3.0084 1.5925 -2.4988 37 1 0.5665 2.0435 1.4521 38 1 1.9293 3.1748 1.2758 39 1 4.2483 1.1046 3.1983 40 1 4.1471 2.4401 2.0259 41 1 6.5664 3.6358 4.5320 42 1 1.1136 -1.8640 4.5835 43 1 3.3403 -2.0474 8.5447 44 1 3.0677 -3.8012 8.4129 45 1 4.3944 -3.0359 7.5054 46 1 4.4649 -0.8625 7.0367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176772616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:20 Heat of formation + Delta-G solvation = -63.099399 kcal Electronic energy + Delta-G solvation = -26742.436903 eV Core-core repulsion = 23144.621756 eV Total energy + Delta-G solvation = -3597.815147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12956 -40.43901 -38.17353 -36.66468 -36.34550 -34.48499 -31.93718 -30.83622 -29.57599 -28.85677 -28.42160 -25.91911 -25.16169 -24.54108 -23.65927 -21.54358 -19.87047 -19.83689 -19.10971 -18.56732 -17.77801 -17.22825 -16.94316 -16.75384 -16.55829 -16.34797 -15.94712 -15.28272 -15.02626 -14.80791 -14.40112 -14.32327 -14.19408 -13.82472 -13.65083 -13.56485 -13.34672 -13.27281 -12.93442 -12.79010 -12.72160 -12.51304 -12.45441 -12.31999 -12.13331 -11.99416 -11.77031 -11.68833 -11.35482 -11.20630 -11.18061 -10.94627 -10.76885 -10.53241 -9.72677 -9.31721 -8.73546 -8.23848 -6.29655 -0.27042 0.93524 1.36492 1.47223 1.49880 1.54528 1.57821 2.18000 2.34008 2.42956 2.70104 3.09068 3.80928 3.96940 4.02382 4.09286 4.17107 4.30948 4.40479 4.46197 4.51504 4.54278 4.63569 4.70201 4.71730 4.74819 4.78997 4.90442 4.91414 4.97890 5.03889 5.04711 5.13439 5.14963 5.18352 5.31863 5.37487 5.40104 5.48780 5.59680 5.65238 5.72721 5.85752 5.91793 6.42182 6.50839 6.76072 7.26421 7.37239 8.79169 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.005728 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.419670 B = 4887.379844 C = 7238.355996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C -0.095 4.095 4 C -0.114 4.114 5 C -0.146 4.146 6 C 0.123 3.877 7 N -0.592 5.592 8 C 0.233 3.767 9 C -0.536 4.536 10 H 0.058 0.942 11 C 0.051 3.949 12 N -0.893 5.893 13 Si 0.931 3.069 14 H -0.272 1.272 15 H -0.273 1.273 16 H -0.276 1.276 17 C 0.583 3.417 18 O -0.562 6.562 19 C -0.286 4.286 20 C -0.100 4.100 21 C 0.076 3.924 22 O -0.333 6.333 23 C 0.026 3.974 24 C -0.423 4.423 25 S 0.396 5.604 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.274 0.726 42 H 0.144 0.856 43 H 0.054 0.946 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 -4.503 -2.365 5.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C -0.115 4.115 4 C -0.152 4.152 5 C -0.203 4.203 6 C 0.001 3.999 7 N -0.322 5.322 8 C 0.110 3.890 9 C -0.579 4.579 10 H 0.076 0.924 11 C -0.154 4.154 12 N -0.530 5.530 13 Si 0.757 3.243 14 H -0.196 1.196 15 H -0.198 1.198 16 H -0.201 1.201 17 C 0.372 3.628 18 O -0.445 6.445 19 C -0.408 4.408 20 C -0.137 4.137 21 C 0.021 3.979 22 O -0.249 6.249 23 C -0.069 4.069 24 C -0.560 4.560 25 S 0.673 5.327 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.162 0.838 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.074 0.926 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.933 -3.640 -2.738 4.948 hybrid contribution -0.414 -0.563 1.517 1.670 sum -2.347 -4.203 -1.221 4.966 Atomic orbital electron populations 1.21659 0.95274 1.00753 1.01067 1.21413 0.96936 0.95870 1.00207 1.21530 0.99786 0.95742 0.94423 1.21522 1.00975 0.99167 0.93511 1.21742 1.00926 1.01075 0.96607 1.21626 0.97252 0.96221 0.84842 1.47991 1.20666 1.30869 1.32650 1.19462 0.79405 0.94493 0.95668 1.21541 0.93568 1.25186 1.17613 0.92413 1.25347 0.94622 0.97052 0.98367 1.69969 0.98374 1.42881 1.41771 0.85886 0.78632 0.79685 0.80129 1.19619 1.19820 1.20106 1.17014 0.84037 0.79968 0.81797 1.90704 1.24191 1.62552 1.67028 1.24632 1.07496 1.03870 1.04820 1.19674 1.01787 0.97200 0.95068 1.17431 0.96206 0.90204 0.94095 1.85983 1.55116 1.42491 1.41280 1.23204 0.93761 1.03091 0.86814 1.26825 1.06937 1.08065 1.14212 1.86295 1.18867 1.14765 1.12749 0.94542 0.92996 0.91864 0.92074 0.94672 0.92335 0.90952 0.91597 0.92641 0.91548 0.93215 0.90741 0.90309 0.94471 0.94160 0.91688 0.83790 0.92744 0.85979 0.92558 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 8.07 71.98 0.58 -3.34 16 2 C -0.11 -3.37 4.80 30.59 0.15 -3.23 16 3 C -0.10 -2.87 2.37 -10.79 -0.03 -2.90 16 4 C -0.11 -2.69 5.07 30.59 0.16 -2.53 16 5 C -0.15 -2.98 9.54 71.98 0.69 -2.30 16 6 C 0.12 4.31 4.88 86.38 0.42 4.73 16 7 N -0.59 -24.36 2.35 -831.01 -1.95 -26.32 16 8 C 0.23 10.35 4.71 85.63 0.40 10.76 16 9 C -0.54 -25.15 6.66 25.60 0.17 -24.98 16 10 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 11 C 0.05 2.39 4.88 84.65 0.41 2.81 16 12 N -0.89 -43.20 13.29 21.45 0.28 -42.92 16 13 Si 0.93 38.07 29.54 68.60 2.03 40.09 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 17 C 0.58 25.22 6.33 86.41 0.55 25.77 16 18 O -0.56 -24.89 12.19 -4.39 -0.05 -24.95 16 19 C -0.29 -12.15 6.20 24.09 0.15 -12.00 16 20 C -0.10 -4.02 10.01 21.80 0.22 -3.80 16 21 C 0.08 2.84 6.61 21.20 0.14 2.98 16 22 O -0.33 -11.03 10.56 -95.95 -1.01 -12.05 16 23 C 0.03 0.59 9.93 113.37 1.13 1.72 16 24 C -0.42 -15.30 9.81 66.87 0.66 -14.64 16 25 S 0.40 16.24 15.57 -56.49 -0.88 15.36 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.77 4.86 -2.39 -0.01 1.76 16 28 H 0.06 1.56 6.60 -2.38 -0.02 1.54 16 29 H 0.06 1.72 6.96 -2.39 -0.02 1.71 16 30 H 0.03 1.34 5.46 -2.38 -0.01 1.32 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.07 1.63 6.19 -2.39 -0.01 1.61 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.12 6.95 -2.39 -0.02 1.10 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 2.65 5.74 -2.38 -0.01 2.64 16 38 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 39 H 0.04 1.75 4.87 -19.38 -0.09 1.66 16 40 H 0.04 1.87 8.04 -2.39 -0.02 1.85 16 41 H 0.27 12.57 8.31 -92.71 -0.77 11.79 16 42 H 0.14 5.63 8.06 -2.91 -0.02 5.61 16 43 H 0.05 1.18 7.84 -2.39 -0.02 1.16 16 44 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.06 1.20 7.85 -2.39 -0.02 1.18 16 46 H 0.17 5.30 6.96 -2.91 -0.02 5.28 16 Total: -1.00 -53.68 364.11 5.09 -48.59 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.90 Total: 23.15 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 5.79 Total: -20.96 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.67 Total: -69.24 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.07 Total: -36.99 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 16.24 SS G_CDS: -0.88 Total: 15.36 kcal Total: -53.68 5.09 -48.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176772616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.512 kcal (2) G-P(sol) polarization free energy of solvation -53.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds