Wall clock time and date at job start Tue Mar 31 2020 14:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38283 * 119.92779 * 269.72533 * 5 4 3 7 7 C 1.38105 * 120.07446 * 179.72301 * 6 5 4 8 8 C 1.38911 * 119.92331 * 0.55357 * 7 6 5 9 9 N 1.39675 * 120.07598 * 179.70095 * 8 7 6 10 10 C 1.46497 * 120.00309 * 155.01515 * 9 8 7 11 11 S 1.65602 * 119.99537 * 335.02323 * 9 8 7 12 12 O 1.42108 * 104.27187 * 206.06549 * 11 9 8 13 13 O 1.42096 * 104.27907 * 333.92576 * 11 9 8 14 14 C 1.81398 * 104.44920 * 90.00049 * 11 9 8 15 15 C 1.53001 * 109.46880 * 179.97438 * 14 11 9 16 16 C 1.50703 * 109.47266 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00326 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99946 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47243 * 89.99834 * 20 18 16 22 22 H 1.48497 * 109.47322 * 210.00007 * 20 18 16 23 23 H 1.48503 * 109.47171 * 330.00231 * 20 18 16 24 24 C 1.38914 * 119.85119 * 359.72105 * 8 7 6 25 25 C 1.38100 * 119.92419 * 0.02562 * 24 8 7 26 26 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 29 29 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 31 31 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 32 32 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 35 35 H 1.08001 * 119.96059 * 359.97438 * 6 5 4 36 36 H 1.07994 * 120.03590 * 180.27360 * 7 6 5 37 37 H 1.09005 * 109.46624 * 89.99932 * 10 9 8 38 38 H 1.08990 * 109.47567 * 210.00241 * 10 9 8 39 39 H 1.08996 * 109.46965 * 330.00937 * 10 9 8 40 40 H 1.09002 * 109.47213 * 299.99587 * 14 11 9 41 41 H 1.08995 * 109.47530 * 59.99714 * 14 11 9 42 42 H 1.08998 * 109.46907 * 299.99372 * 15 14 11 43 43 H 1.08999 * 109.47513 * 59.99926 * 15 14 11 44 44 H 0.96996 * 119.99653 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.03471 * 179.97438 * 24 8 7 46 46 H 1.08005 * 119.96293 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3082 3.5111 -1.1987 7 6 4.7632 4.8151 -1.2029 8 6 4.9947 5.4721 -0.0010 9 7 5.4608 6.7888 -0.0015 10 6 5.1994 7.6588 1.1478 11 16 6.3087 7.3664 -1.3014 12 8 7.1160 8.4032 -0.7604 13 8 6.8942 6.2084 -1.8805 14 6 5.0398 8.0552 -2.3996 15 6 5.7059 8.6278 -3.6524 16 6 4.6518 9.2006 -4.5645 17 1 3.6109 9.1599 -4.2794 18 6 5.0163 9.7767 -5.7630 19 7 4.0964 10.2761 -6.5592 20 14 6.8167 9.8478 -6.2558 21 1 7.1692 8.6250 -7.0211 22 1 7.0516 11.0458 -7.1013 23 1 7.6608 9.9292 -5.0367 24 6 4.7621 4.8164 1.2014 25 6 4.3023 3.5142 1.1983 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.1326 2.9981 -2.1327 36 1 4.9430 5.3219 -2.1394 37 1 6.0125 7.5640 1.8676 38 1 5.1302 8.6934 0.8120 39 1 4.2611 7.3661 1.6190 40 1 4.3415 7.2688 -2.6862 41 1 4.5011 8.8478 -1.8804 42 1 6.4038 9.4143 -3.3654 43 1 6.2448 7.8355 -4.1719 44 1 4.3528 10.6810 -7.4025 45 1 4.9416 5.3242 2.1375 46 1 4.1216 3.0037 2.1328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177534900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:31 Heat of formation + Delta-G solvation = -66.957144 kcal Electronic energy + Delta-G solvation = -25357.883970 eV Core-core repulsion = 21759.901538 eV Total energy + Delta-G solvation = -3597.982432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83465 -37.00462 -36.89863 -35.72368 -35.20018 -34.03083 -31.74148 -31.56590 -31.02057 -28.46206 -26.42521 -26.02027 -24.03720 -22.69638 -21.60744 -21.26992 -20.79338 -19.08866 -17.94258 -17.17618 -16.91344 -15.95740 -15.74361 -15.46499 -15.36979 -14.69533 -14.45690 -14.29429 -14.14537 -14.05291 -13.73929 -13.50128 -13.10395 -12.95631 -12.85467 -12.68334 -12.67273 -12.07926 -11.97392 -11.83087 -11.77709 -11.72043 -11.47282 -11.38548 -11.32175 -11.28967 -10.95054 -10.84241 -10.72242 -10.49726 -10.40312 -10.10181 -9.66396 -9.39229 -8.95209 -8.70191 -7.94942 -6.20298 -4.22178 0.41188 1.34256 1.38657 2.65831 3.23702 3.31263 3.34922 3.67651 4.06339 4.30414 4.32221 4.46870 4.54134 4.65759 4.82555 4.84497 4.92721 5.03347 5.09493 5.11203 5.28965 5.29382 5.34820 5.37114 5.44188 5.46731 5.48084 5.54626 5.57615 5.59900 5.69760 5.74854 5.78552 5.89394 5.97462 6.07356 6.12143 6.18269 6.24693 6.46306 6.57956 6.62304 6.73964 6.86194 7.04481 7.49285 8.32164 8.80589 9.38885 10.91982 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.003098 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.803796 B = 9036.041717 C =10358.008462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.076 4.076 5 C -0.113 4.113 6 C -0.078 4.078 7 C -0.151 4.151 8 C 0.175 3.825 9 N -0.948 5.948 10 C 0.085 3.915 11 S 2.575 3.425 12 O -0.954 6.954 13 O -0.948 6.948 14 C -0.580 4.580 15 C -0.006 4.006 16 C -0.521 4.521 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.868 3.132 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.262 1.262 24 C -0.150 4.150 25 C -0.091 4.091 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.267 0.733 45 H 0.125 0.875 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -16.498 17.501 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.097 4.097 7 C -0.172 4.172 8 C 0.079 3.921 9 N -0.771 5.771 10 C -0.059 4.059 11 S 2.675 3.325 12 O -0.944 6.944 13 O -0.939 6.939 14 C -0.713 4.713 15 C -0.046 4.046 16 C -0.560 4.560 17 H 0.097 0.903 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.695 3.305 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.172 4.172 25 C -0.110 4.110 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.143 0.857 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.732 -16.346 17.299 23.956 hybrid contribution 0.232 0.396 -0.463 0.652 sum -2.501 -15.950 16.836 23.326 Atomic orbital electron populations 1.21781 0.95954 1.01448 1.01931 1.21552 0.95837 0.96976 1.01927 1.21631 0.94549 0.96550 1.02578 1.20552 0.95444 0.92613 1.02697 1.19789 1.02007 0.96564 0.93051 1.20801 0.97490 0.93564 0.97846 1.21142 1.02505 0.97020 0.96582 1.17511 0.96344 0.83619 0.94643 1.55778 1.70135 1.17041 1.34156 1.21646 1.02271 0.93614 0.88386 1.06357 0.76831 0.74764 0.74533 1.93566 1.65155 1.58612 1.77073 1.93595 1.75024 1.47996 1.77256 1.30359 1.16005 1.12244 1.12695 1.19432 0.97580 0.96684 0.90860 1.20819 0.94008 1.38743 1.02385 0.90321 1.24975 0.97566 0.94420 0.96055 1.69875 1.33167 1.38754 1.11371 0.86938 0.85694 0.78420 0.79495 1.19585 1.20668 1.18641 1.20801 1.04751 0.95292 0.96366 1.20792 0.98766 0.93898 0.97511 0.92637 0.92931 0.92808 0.92003 0.92163 0.91903 0.91646 0.91086 0.91290 0.85453 0.85098 0.91728 0.89956 0.90312 0.85321 0.85336 0.94861 0.95249 0.92307 0.85695 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.88 5.20 -26.73 -0.14 -1.02 16 4 C -0.08 -0.62 5.34 -27.88 -0.15 -0.77 16 5 C -0.11 -1.21 5.14 -104.58 -0.54 -1.75 16 6 C -0.08 -0.97 9.69 -39.61 -0.38 -1.36 16 7 C -0.15 -2.21 8.42 -39.38 -0.33 -2.54 16 8 C 0.17 2.45 6.04 -83.79 -0.51 1.94 16 9 N -0.95 -13.36 3.32 -65.40 -0.22 -13.58 16 10 C 0.09 0.91 9.20 59.85 0.55 1.46 16 11 S 2.58 45.21 4.74 -107.50 -0.51 44.70 16 12 O -0.95 -18.73 17.09 -57.54 -0.98 -19.71 16 13 O -0.95 -18.76 15.17 -57.54 -0.87 -19.63 16 14 C -0.58 -10.61 5.98 37.16 0.22 -10.39 16 15 C -0.01 -0.14 4.05 -27.88 -0.11 -0.26 16 16 C -0.52 -14.37 9.66 -34.44 -0.33 -14.71 16 17 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 20 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 24 C -0.15 -1.73 9.13 -39.38 -0.36 -2.09 16 25 C -0.09 -0.94 9.69 -39.61 -0.38 -1.32 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.13 2.01 5.13 -52.49 -0.27 1.74 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 39 H 0.08 0.65 7.47 -51.93 -0.39 0.26 16 40 H 0.13 2.16 7.18 -51.92 -0.37 1.79 16 41 H 0.13 2.12 8.14 -51.93 -0.42 1.69 16 42 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 43 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.13 1.17 7.13 -52.49 -0.37 0.80 16 46 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -33.70 382.69 -10.71 -44.42 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.65 Total: -0.12 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: -2.35 Total: -32.43 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.56 Total: -39.60 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.86 Total: -39.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.51 Total: 44.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.70 -10.71 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177534900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.539 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds