Wall clock time and date at job start Tue Mar 31 2020 14:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38283 * 119.92779 * 269.72533 * 5 4 3 7 7 C 1.38105 * 120.07446 * 179.72301 * 6 5 4 8 8 C 1.38911 * 119.92331 * 0.55357 * 7 6 5 9 9 N 1.39675 * 120.07598 * 179.70095 * 8 7 6 10 10 C 1.46497 * 120.00309 * 155.01515 * 9 8 7 11 11 S 1.65602 * 119.99537 * 335.02323 * 9 8 7 12 12 O 1.42108 * 104.27187 * 206.06549 * 11 9 8 13 13 O 1.42096 * 104.27907 * 333.92576 * 11 9 8 14 14 C 1.81398 * 104.44920 * 90.00049 * 11 9 8 15 15 C 1.53001 * 109.46880 * 179.97438 * 14 11 9 16 16 C 1.50703 * 109.47266 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00326 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99946 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47243 * 89.99834 * 20 18 16 22 22 H 1.48497 * 109.47322 * 210.00007 * 20 18 16 23 23 H 1.48503 * 109.47171 * 330.00231 * 20 18 16 24 24 C 1.38914 * 119.85119 * 359.72105 * 8 7 6 25 25 C 1.38100 * 119.92419 * 0.02562 * 24 8 7 26 26 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 29 29 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 31 31 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 32 32 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 35 35 H 1.08001 * 119.96059 * 359.97438 * 6 5 4 36 36 H 1.07994 * 120.03590 * 180.27360 * 7 6 5 37 37 H 1.09005 * 109.46624 * 89.99932 * 10 9 8 38 38 H 1.08990 * 109.47567 * 210.00241 * 10 9 8 39 39 H 1.08996 * 109.46965 * 330.00937 * 10 9 8 40 40 H 1.09002 * 109.47213 * 299.99587 * 14 11 9 41 41 H 1.08995 * 109.47530 * 59.99714 * 14 11 9 42 42 H 1.08998 * 109.46907 * 299.99372 * 15 14 11 43 43 H 1.08999 * 109.47513 * 59.99926 * 15 14 11 44 44 H 0.96996 * 119.99653 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.03471 * 179.97438 * 24 8 7 46 46 H 1.08005 * 119.96293 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3082 3.5111 -1.1987 7 6 4.7632 4.8151 -1.2029 8 6 4.9947 5.4721 -0.0010 9 7 5.4608 6.7888 -0.0015 10 6 5.1994 7.6588 1.1478 11 16 6.3087 7.3664 -1.3014 12 8 7.1160 8.4032 -0.7604 13 8 6.8942 6.2084 -1.8805 14 6 5.0398 8.0552 -2.3996 15 6 5.7059 8.6278 -3.6524 16 6 4.6518 9.2006 -4.5645 17 1 3.6109 9.1599 -4.2794 18 6 5.0163 9.7767 -5.7630 19 7 4.0964 10.2761 -6.5592 20 14 6.8167 9.8478 -6.2558 21 1 7.1692 8.6250 -7.0211 22 1 7.0516 11.0458 -7.1013 23 1 7.6608 9.9292 -5.0367 24 6 4.7621 4.8164 1.2014 25 6 4.3023 3.5142 1.1983 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.1326 2.9981 -2.1327 36 1 4.9430 5.3219 -2.1394 37 1 6.0125 7.5640 1.8676 38 1 5.1302 8.6934 0.8120 39 1 4.2611 7.3661 1.6190 40 1 4.3415 7.2688 -2.6862 41 1 4.5011 8.8478 -1.8804 42 1 6.4038 9.4143 -3.3654 43 1 6.2448 7.8355 -4.1719 44 1 4.3528 10.6810 -7.4025 45 1 4.9416 5.3242 2.1375 46 1 4.1216 3.0037 2.1328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177534900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:30 Heat of formation + Delta-G solvation = -87.044227 kcal Electronic energy + Delta-G solvation = -25358.755011 eV Core-core repulsion = 21759.901538 eV Total energy + Delta-G solvation = -3598.853473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75511 -38.43584 -37.78483 -37.18524 -35.99274 -35.90504 -33.55816 -32.47807 -31.93029 -29.22401 -28.01569 -27.19987 -24.83040 -23.65305 -23.11444 -22.15498 -21.65729 -20.31712 -19.51454 -18.76437 -18.10008 -17.36117 -16.71020 -16.57331 -16.41220 -16.26267 -15.64374 -15.38974 -15.18484 -14.93208 -14.84845 -14.80054 -14.42239 -13.93444 -13.85819 -13.67942 -13.60302 -13.43269 -13.36705 -13.19721 -13.13384 -13.04960 -12.79620 -12.58474 -12.30324 -12.14641 -12.02657 -11.99007 -11.76903 -11.74445 -11.56724 -11.43101 -11.31856 -10.94154 -10.87388 -9.86939 -8.91158 -8.39373 -6.45821 -0.97960 0.41289 0.47351 1.30192 1.31901 1.41712 1.42283 2.26945 2.56567 2.85694 2.94170 2.96978 3.45492 3.80908 3.86789 3.89514 3.96191 4.04934 4.17689 4.25887 4.40592 4.43692 4.48168 4.50526 4.54492 4.61734 4.64286 4.79312 4.85655 4.90062 4.91102 4.97814 5.00226 5.03207 5.04939 5.17508 5.22204 5.35714 5.37387 5.42269 5.44611 5.53506 5.56473 5.64721 5.77636 6.13103 6.13860 6.60007 7.18627 8.76208 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.003098 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.803796 B = 9036.041717 C =10358.008462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.073 4.073 5 C -0.109 4.109 6 C -0.093 4.093 7 C -0.182 4.182 8 C 0.151 3.849 9 N -0.942 5.942 10 C 0.071 3.929 11 S 2.604 3.396 12 O -0.974 6.974 13 O -0.974 6.974 14 C -0.585 4.585 15 C -0.014 4.014 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.015 3.985 19 N -0.938 5.938 20 Si 0.924 3.076 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.249 1.249 24 C -0.146 4.146 25 C -0.088 4.088 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.271 0.729 45 H 0.151 0.849 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 -18.136 20.046 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.149 4.149 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.203 4.203 8 C 0.055 3.945 9 N -0.768 5.768 10 C -0.072 4.072 11 S 2.703 3.297 12 O -0.965 6.965 13 O -0.964 6.964 14 C -0.717 4.717 15 C -0.054 4.054 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.183 4.183 19 N -0.578 5.578 20 Si 0.746 3.254 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.173 1.173 24 C -0.168 4.168 25 C -0.106 4.106 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.152 0.848 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.168 0.832 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.170 -17.980 19.839 26.862 hybrid contribution -0.080 0.810 -1.154 1.412 sum -2.250 -17.170 18.685 25.475 Atomic orbital electron populations 1.21795 0.95949 1.01833 1.01699 1.21534 0.95835 0.96273 1.02423 1.21583 0.94131 0.97176 1.02052 1.20592 0.95649 0.91074 1.03690 1.20116 1.00708 0.97632 0.92588 1.20999 0.97809 0.93125 0.99211 1.21215 1.04467 0.98229 0.96415 1.17724 0.97812 0.83556 0.95398 1.55384 1.70086 1.17635 1.33663 1.22024 1.04332 0.93327 0.87555 1.05239 0.76172 0.73809 0.74512 1.93532 1.65894 1.59545 1.77504 1.93557 1.75779 1.48705 1.78341 1.30336 1.16831 1.13069 1.11435 1.19373 0.96790 0.96825 0.92373 1.21125 0.93903 1.38477 1.03254 0.93259 1.25859 1.02091 0.94201 0.96197 1.70001 1.35455 1.40202 1.12127 0.86039 0.80425 0.79093 0.79796 1.18482 1.19705 1.17282 1.21128 1.03675 0.95723 0.96295 1.21211 0.97278 0.93485 0.98630 0.93318 0.92267 0.92624 0.92014 0.91150 0.91692 0.92956 0.90932 0.89496 0.84845 0.87035 0.90392 0.89637 0.87472 0.84492 0.83832 0.94689 0.94971 0.92013 0.83158 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.37 5.93 30.59 0.18 -1.19 16 3 C -0.11 -1.48 5.20 30.59 0.16 -1.32 16 4 C -0.07 -1.01 5.34 29.85 0.16 -0.85 16 5 C -0.11 -2.11 5.14 -19.84 -0.10 -2.21 16 6 C -0.09 -2.27 9.69 22.25 0.22 -2.05 16 7 C -0.18 -5.33 8.42 22.40 0.19 -5.14 16 8 C 0.15 4.01 6.04 38.21 0.23 4.24 16 9 N -0.94 -25.34 3.32 -360.82 -1.20 -26.54 16 10 C 0.07 1.34 9.20 127.77 1.18 2.52 16 11 S 2.60 90.57 4.74 -56.49 -0.27 90.30 16 12 O -0.97 -37.52 17.09 -127.65 -2.18 -39.70 16 13 O -0.97 -38.76 15.17 -127.65 -1.94 -40.69 16 14 C -0.58 -21.65 5.98 71.98 0.43 -21.22 16 15 C -0.01 -0.68 4.05 29.85 0.12 -0.56 16 16 C -0.53 -29.99 9.66 25.60 0.25 -29.75 16 17 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 18 C 0.02 0.89 5.47 84.65 0.46 1.35 16 19 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 20 Si 0.92 43.80 27.47 68.60 1.88 45.69 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 24 C -0.15 -2.95 9.13 22.40 0.20 -2.75 16 25 C -0.09 -1.52 9.69 22.25 0.22 -1.30 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 35 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.11 3.60 5.13 -2.91 -0.01 3.58 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.08 1.57 7.79 -2.39 -0.02 1.55 16 39 H 0.11 1.42 7.47 -2.39 -0.02 1.40 16 40 H 0.14 4.77 7.18 -2.39 -0.02 4.75 16 41 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 42 H 0.03 1.63 7.20 -2.39 -0.02 1.61 16 43 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.15 2.19 7.13 -2.91 -0.02 2.17 16 46 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -73.80 382.69 2.09 -71.71 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.89 Total: 17.91 kcal Atomic # 6 Polarization: -65.86 SS G_CDS: 4.60 Total: -61.26 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -0.90 Total: -83.95 kcal Atomic # 8 Polarization: -76.28 SS G_CDS: -4.12 Total: -80.39 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 90.57 SS G_CDS: -0.27 Total: 90.30 kcal Total: -73.80 2.09 -71.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177534900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.335 kcal (2) G-P(sol) polarization free energy of solvation -73.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds