Wall clock time and date at job start Tue Mar 31 2020 14:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46810 * 2 1 4 4 C 1.37979 * 120.07559 * 98.08776 * 3 2 1 5 5 C 1.38342 * 120.14279 * 180.02562 * 4 3 2 6 6 C 1.38378 * 120.29208 * 359.97438 * 5 4 3 7 7 C 1.37929 * 120.14822 * 0.02562 * 6 5 4 8 8 C 1.39562 * 120.07117 * 278.10266 * 3 2 1 9 9 C 1.47846 * 120.14306 * 359.96129 * 8 3 2 10 10 O 1.21549 * 119.99874 * 5.63624 * 9 8 3 11 11 N 1.34780 * 119.99955 * 185.64070 * 9 8 3 12 12 C 1.46499 * 120.00152 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46884 * 179.97438 * 12 11 9 14 14 C 1.38296 * 119.92602 * 269.72112 * 13 12 11 15 15 C 1.38107 * 120.06610 * 179.72613 * 14 13 12 16 16 C 1.38881 * 119.92479 * 0.57562 * 15 14 13 17 17 O 1.35755 * 120.06268 * 179.68179 * 16 15 14 18 18 C 1.34839 * 116.99749 * 185.61779 * 17 16 15 19 19 H 1.07996 * 119.99842 * 354.89973 * 18 17 16 20 20 C 1.38648 * 119.99942 * 174.90311 * 18 17 16 21 21 N 1.31566 * 120.00150 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99812 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47275 * 60.00244 * 22 20 18 24 24 H 1.48502 * 109.46896 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46928 * 299.99875 * 22 20 18 26 26 C 1.38873 * 119.86517 * 359.69887 * 16 15 14 27 27 C 1.38097 * 119.93029 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47217 * 59.99979 * 1 2 3 29 29 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47187 * 300.00397 * 1 2 3 31 31 H 1.08994 * 109.47077 * 240.00054 * 2 1 3 32 32 H 1.08999 * 109.46965 * 119.99310 * 2 1 3 33 33 H 1.07998 * 119.92439 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.84858 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.92335 * 179.74851 * 6 5 4 36 36 H 1.08007 * 120.07928 * 179.97438 * 7 6 5 37 37 H 0.96998 * 119.99616 * 0.02562 * 11 9 8 38 38 H 1.09005 * 109.46806 * 299.99945 * 12 11 9 39 39 H 1.08998 * 109.46915 * 59.99687 * 12 11 9 40 40 H 1.07998 * 119.96854 * 359.97438 * 14 13 12 41 41 H 1.07999 * 120.03313 * 180.27148 * 15 14 13 42 42 H 0.96996 * 119.99574 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.03091 * 179.97438 * 26 16 15 44 44 H 1.08004 * 119.96393 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4211 2.0168 1.1821 5 6 2.8819 3.3213 1.1838 6 6 2.9566 4.0367 0.0017 7 6 2.5710 3.4527 -1.1869 8 6 2.1048 2.1370 -1.1957 9 6 1.6904 1.5045 -2.4662 10 8 1.1899 0.3968 -2.4587 11 7 1.8675 2.1561 -3.6326 12 6 1.4563 1.5297 -4.8914 13 6 1.7606 2.4593 -6.0379 14 6 0.8105 3.3730 -6.4562 15 6 1.0884 4.2300 -7.5029 16 6 2.3191 4.1654 -8.1432 17 8 2.5928 5.0022 -9.1766 18 6 3.7575 4.8096 -9.8282 19 1 4.4610 4.0725 -9.4702 20 6 4.0520 5.5579 -10.9576 21 7 3.1952 6.4562 -11.3934 22 14 5.6658 5.2916 -11.8598 23 1 5.7434 3.8855 -12.3309 24 1 5.7387 6.2092 -13.0251 25 1 6.7985 5.5689 -10.9404 26 6 3.2689 3.2429 -7.7244 27 6 2.9871 2.3925 -6.6735 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.3648 1.4640 2.1082 34 1 3.1846 3.7832 2.1119 35 1 3.3134 5.0560 0.0104 36 1 2.6294 4.0123 -2.1089 37 1 2.2673 3.0399 -3.6385 38 1 2.0004 0.5949 -5.0268 39 1 0.3858 1.3263 -4.8633 40 1 -0.1483 3.4191 -5.9613 41 1 0.3476 4.9463 -7.8263 42 1 3.4011 6.9794 -12.1837 43 1 4.2267 3.1901 -8.2207 44 1 3.7255 1.6752 -6.3471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178310491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:44 Heat of formation + Delta-G solvation = -19.640996 kcal Electronic energy + Delta-G solvation = -25783.541723 eV Core-core repulsion = 22052.167122 eV Total energy + Delta-G solvation = -3731.374601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55884 -39.22032 -38.38236 -36.87919 -34.95762 -33.70258 -32.42277 -31.66194 -30.30667 -29.84472 -29.41803 -26.06486 -25.06724 -23.93698 -23.50576 -22.08265 -21.31398 -20.62142 -20.43611 -18.12896 -17.98109 -17.03428 -16.26196 -15.98697 -15.43354 -15.19901 -15.11378 -14.65082 -14.61649 -14.21739 -13.96103 -13.84639 -13.67009 -13.56028 -13.23016 -13.13344 -12.81054 -12.70790 -12.38535 -12.11442 -11.90293 -11.79568 -11.70710 -11.42849 -11.13883 -10.95248 -10.90563 -10.80934 -10.73148 -10.51771 -9.65235 -9.45576 -9.26434 -9.05242 -8.92514 -8.83215 -8.31394 -7.35506 -6.54789 -4.13903 0.66770 1.10417 2.03733 2.10304 2.80175 3.07223 3.08247 3.11699 3.35030 3.65855 3.88835 4.44740 4.51357 4.57467 4.61004 4.78165 4.99150 5.02658 5.12966 5.17946 5.24115 5.27042 5.39508 5.40051 5.42795 5.60151 5.63955 5.76890 5.77858 5.85451 5.90299 6.02658 6.06826 6.09760 6.17802 6.23912 6.32166 6.42821 6.53134 6.58023 6.64456 6.77698 6.93009 7.11375 7.24484 7.32676 7.56747 7.69109 7.89691 8.22605 8.90373 9.58068 10.62577 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.002217 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.467616 B =12628.441413 C =13162.754654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 C -0.021 4.021 4 C -0.132 4.132 5 C -0.094 4.094 6 C -0.134 4.134 7 C -0.082 4.082 8 C -0.135 4.135 9 C 0.551 3.449 10 O -0.534 6.534 11 N -0.717 5.717 12 C 0.180 3.820 13 C -0.216 4.216 14 C -0.054 4.054 15 C -0.195 4.195 16 C 0.160 3.840 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.272 0.728 43 H 0.128 0.872 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -7.086 21.856 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 C -0.022 4.022 4 C -0.150 4.150 5 C -0.112 4.112 6 C -0.152 4.152 7 C -0.101 4.101 8 C -0.139 4.139 9 C 0.339 3.661 10 O -0.413 6.413 11 N -0.369 5.369 12 C 0.058 3.942 13 C -0.218 4.218 14 C -0.073 4.073 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.075 6.075 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.069 4.069 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.146 0.854 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.348 -7.510 21.500 22.814 hybrid contribution 1.135 0.496 -0.506 1.338 sum -0.213 -7.014 20.994 22.136 Atomic orbital electron populations 1.21595 0.94294 1.01608 1.01541 1.20770 0.96926 0.91765 1.03328 1.20077 0.94223 0.96397 0.91515 1.21059 1.00913 0.95475 0.97549 1.21341 0.97258 0.94321 0.98266 1.21099 1.01330 1.00427 0.92380 1.21379 0.96121 0.93831 0.98761 1.19880 1.05162 0.95130 0.93679 1.18298 0.78851 0.85370 0.83602 1.90710 1.44106 1.19415 1.87058 1.46312 1.63102 1.21342 1.06123 1.19990 0.99756 0.94421 0.80016 1.19203 0.96715 1.03754 1.02099 1.20535 0.97688 0.93875 0.95203 1.20216 0.96232 1.04394 1.00608 1.19442 0.92741 0.88704 0.88546 1.83981 1.38911 1.46921 1.37697 1.21309 0.93768 1.23149 1.08793 0.88964 1.25320 0.99566 0.95497 0.96053 1.70028 1.35057 1.20994 1.23251 0.85762 0.80028 0.78711 0.78856 1.19401 1.20193 1.19429 1.21156 1.01438 1.01104 1.01925 1.20643 0.95127 0.96843 0.94304 0.91693 0.92701 0.93864 0.88195 0.92188 0.85567 0.85706 0.85427 0.85428 0.76430 0.91452 0.91408 0.86955 0.86361 0.91802 0.85413 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.43 37.16 0.35 -1.05 16 2 C -0.09 -0.96 5.32 -27.88 -0.15 -1.11 16 3 C -0.02 -0.23 5.17 -104.22 -0.54 -0.77 16 4 C -0.13 -1.16 9.66 -39.64 -0.38 -1.54 16 5 C -0.09 -0.74 10.04 -39.49 -0.40 -1.14 16 6 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 7 C -0.08 -0.80 9.53 -39.19 -0.37 -1.18 16 8 C -0.14 -1.56 5.87 -104.97 -0.62 -2.18 16 9 C 0.55 7.29 7.64 -12.33 -0.09 7.19 16 10 O -0.53 -8.14 11.60 5.32 0.06 -8.08 16 11 N -0.72 -8.97 5.50 -62.43 -0.34 -9.31 16 12 C 0.18 2.47 5.80 -5.19 -0.03 2.44 16 13 C -0.22 -3.40 5.25 -104.58 -0.55 -3.95 16 14 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 15 C -0.20 -3.88 9.99 -39.39 -0.39 -4.27 16 16 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 17 O -0.17 -4.75 9.76 0.01 0.00 -4.75 16 18 C -0.39 -10.64 9.49 30.88 0.29 -10.35 16 19 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.53 13.67 55.48 0.76 -23.78 16 22 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 C -0.24 -4.84 9.17 -39.40 -0.36 -5.21 16 27 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 28 H 0.06 0.82 6.59 -51.93 -0.34 0.47 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 1.26 5.95 -51.93 -0.31 0.95 16 32 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 33 H 0.13 0.85 8.05 -52.49 -0.42 0.42 16 34 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.08 6.45 -52.48 -0.34 0.74 16 37 H 0.40 4.51 6.53 -40.82 -0.27 4.24 16 38 H 0.07 0.93 8.09 -51.93 -0.42 0.52 16 39 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 44 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -30.40 368.80 -9.35 -39.75 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.60 Total: 8.47 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -4.76 Total: -22.75 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.42 Total: -33.09 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.06 Total: -12.82 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.40 -9.35 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178310491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.113 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds