Wall clock time and date at job start Tue Mar 31 2020 14:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46810 * 2 1 4 4 C 1.37979 * 120.07559 * 98.08776 * 3 2 1 5 5 C 1.38342 * 120.14279 * 180.02562 * 4 3 2 6 6 C 1.38378 * 120.29208 * 359.97438 * 5 4 3 7 7 C 1.37929 * 120.14822 * 0.02562 * 6 5 4 8 8 C 1.39562 * 120.07117 * 278.10266 * 3 2 1 9 9 C 1.47846 * 120.14306 * 359.96129 * 8 3 2 10 10 O 1.21549 * 119.99874 * 5.63624 * 9 8 3 11 11 N 1.34780 * 119.99955 * 185.64070 * 9 8 3 12 12 C 1.46499 * 120.00152 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46884 * 179.97438 * 12 11 9 14 14 C 1.38296 * 119.92602 * 269.72112 * 13 12 11 15 15 C 1.38107 * 120.06610 * 179.72613 * 14 13 12 16 16 C 1.38881 * 119.92479 * 0.57562 * 15 14 13 17 17 O 1.35755 * 120.06268 * 179.68179 * 16 15 14 18 18 C 1.34839 * 116.99749 * 185.61779 * 17 16 15 19 19 H 1.07996 * 119.99842 * 354.89973 * 18 17 16 20 20 C 1.38648 * 119.99942 * 174.90311 * 18 17 16 21 21 N 1.31566 * 120.00150 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99812 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47275 * 60.00244 * 22 20 18 24 24 H 1.48502 * 109.46896 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46928 * 299.99875 * 22 20 18 26 26 C 1.38873 * 119.86517 * 359.69887 * 16 15 14 27 27 C 1.38097 * 119.93029 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47217 * 59.99979 * 1 2 3 29 29 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47187 * 300.00397 * 1 2 3 31 31 H 1.08994 * 109.47077 * 240.00054 * 2 1 3 32 32 H 1.08999 * 109.46965 * 119.99310 * 2 1 3 33 33 H 1.07998 * 119.92439 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.84858 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.92335 * 179.74851 * 6 5 4 36 36 H 1.08007 * 120.07928 * 179.97438 * 7 6 5 37 37 H 0.96998 * 119.99616 * 0.02562 * 11 9 8 38 38 H 1.09005 * 109.46806 * 299.99945 * 12 11 9 39 39 H 1.08998 * 109.46915 * 59.99687 * 12 11 9 40 40 H 1.07998 * 119.96854 * 359.97438 * 14 13 12 41 41 H 1.07999 * 120.03313 * 180.27148 * 15 14 13 42 42 H 0.96996 * 119.99574 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.03091 * 179.97438 * 26 16 15 44 44 H 1.08004 * 119.96393 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4211 2.0168 1.1821 5 6 2.8819 3.3213 1.1838 6 6 2.9566 4.0367 0.0017 7 6 2.5710 3.4527 -1.1869 8 6 2.1048 2.1370 -1.1957 9 6 1.6904 1.5045 -2.4662 10 8 1.1899 0.3968 -2.4587 11 7 1.8675 2.1561 -3.6326 12 6 1.4563 1.5297 -4.8914 13 6 1.7606 2.4593 -6.0379 14 6 0.8105 3.3730 -6.4562 15 6 1.0884 4.2300 -7.5029 16 6 2.3191 4.1654 -8.1432 17 8 2.5928 5.0022 -9.1766 18 6 3.7575 4.8096 -9.8282 19 1 4.4610 4.0725 -9.4702 20 6 4.0520 5.5579 -10.9576 21 7 3.1952 6.4562 -11.3934 22 14 5.6658 5.2916 -11.8598 23 1 5.7434 3.8855 -12.3309 24 1 5.7387 6.2092 -13.0251 25 1 6.7985 5.5689 -10.9404 26 6 3.2689 3.2429 -7.7244 27 6 2.9871 2.3925 -6.6735 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.3648 1.4640 2.1082 34 1 3.1846 3.7832 2.1119 35 1 3.3134 5.0560 0.0104 36 1 2.6294 4.0123 -2.1089 37 1 2.2673 3.0399 -3.6385 38 1 2.0004 0.5949 -5.0268 39 1 0.3858 1.3263 -4.8633 40 1 -0.1483 3.4191 -5.9613 41 1 0.3476 4.9463 -7.8263 42 1 3.4011 6.9794 -12.1837 43 1 4.2267 3.1901 -8.2207 44 1 3.7255 1.6752 -6.3471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178310491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:43 Heat of formation + Delta-G solvation = -36.318228 kcal Electronic energy + Delta-G solvation = -25784.264902 eV Core-core repulsion = 22052.167122 eV Total energy + Delta-G solvation = -3732.097780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47095 -40.80249 -39.34588 -38.42818 -36.03421 -34.64075 -34.24995 -32.58780 -31.84428 -30.99843 -30.29599 -27.71560 -26.51307 -24.85451 -24.27574 -23.66148 -22.39057 -21.82232 -21.38648 -19.88461 -19.05026 -18.66287 -17.21437 -16.79118 -16.64158 -16.39084 -16.15495 -15.99286 -15.96636 -15.59072 -15.47061 -15.08819 -14.70696 -14.65614 -14.41307 -14.26549 -14.02593 -13.87909 -13.63422 -13.28428 -13.08385 -13.02756 -12.64542 -12.54800 -12.49294 -12.38499 -12.26411 -12.14517 -11.89442 -11.69938 -11.21647 -10.83920 -10.61461 -10.14202 -9.86339 -9.82142 -9.63798 -9.02484 -8.48799 -6.17211 -0.08494 0.42333 0.52739 0.56117 1.35511 1.45198 1.51330 1.91864 2.16746 2.26406 2.84717 2.89646 3.15559 3.47965 3.73834 3.81514 3.84325 3.95351 4.01540 4.15300 4.16360 4.36063 4.44084 4.50909 4.55211 4.56343 4.61284 4.65695 4.74039 4.79204 4.93789 5.02003 5.03088 5.13143 5.13607 5.21867 5.24963 5.34305 5.39689 5.50724 5.52932 5.54807 5.66919 5.67992 5.73507 5.98780 6.00515 6.14234 6.56567 6.95871 7.22811 7.74673 8.73716 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.002217 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.467616 B =12628.441413 C =13162.754654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 C -0.037 4.037 4 C -0.134 4.134 5 C -0.088 4.088 6 C -0.138 4.138 7 C -0.089 4.089 8 C -0.158 4.158 9 C 0.550 3.450 10 O -0.558 6.558 11 N -0.714 5.714 12 C 0.186 3.814 13 C -0.183 4.183 14 C -0.044 4.044 15 C -0.204 4.204 16 C 0.123 3.877 17 O -0.228 6.228 18 C -0.415 4.415 19 H 0.104 0.896 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.243 4.243 27 C -0.046 4.046 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.407 0.593 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -8.264 25.120 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 C -0.038 4.038 4 C -0.152 4.152 5 C -0.106 4.106 6 C -0.156 4.156 7 C -0.108 4.108 8 C -0.161 4.161 9 C 0.339 3.661 10 O -0.439 6.439 11 N -0.366 5.366 12 C 0.064 3.936 13 C -0.184 4.184 14 C -0.062 4.062 15 C -0.223 4.223 16 C 0.072 3.928 17 O -0.134 6.134 18 C -0.491 4.491 19 H 0.121 0.879 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.262 4.262 27 C -0.064 4.064 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.244 0.756 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.485 -8.715 24.822 26.312 hybrid contribution 0.709 0.682 -1.127 1.496 sum 0.224 -8.034 23.694 25.020 Atomic orbital electron populations 1.21539 0.94473 1.01677 1.00879 1.20709 0.96766 0.92058 1.03057 1.20225 0.94970 0.96458 0.92143 1.21344 1.00206 0.96076 0.97598 1.21739 0.95654 0.93872 0.99314 1.21438 1.00607 1.01483 0.92038 1.21546 0.96088 0.93275 0.99905 1.19846 1.07090 0.96120 0.93049 1.18603 0.78246 0.85044 0.84188 1.90706 1.45220 1.20526 1.87441 1.46131 1.63239 1.21625 1.05570 1.19888 1.00338 0.93840 0.79564 1.19492 0.95520 1.02157 1.01277 1.20875 0.99183 0.92430 0.93737 1.20445 0.95335 1.05167 1.01352 1.19989 0.94583 0.89693 0.88547 1.83952 1.39751 1.49639 1.40070 1.21792 0.94243 1.23644 1.09376 0.87924 1.26580 1.03570 0.95025 0.96740 1.70174 1.37816 1.23151 1.24478 0.84664 0.75196 0.79017 0.77480 1.18249 1.19725 1.18054 1.21240 1.00787 1.01313 1.02879 1.20934 0.96277 0.96298 0.92925 0.94130 0.92293 0.92582 0.90617 0.90224 0.83404 0.82747 0.83257 0.84652 0.75606 0.91020 0.90781 0.83577 0.86634 0.91779 0.86132 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.43 71.98 0.68 -1.89 16 2 C -0.09 -1.77 5.32 29.85 0.16 -1.61 16 3 C -0.04 -0.73 5.17 -19.60 -0.10 -0.83 16 4 C -0.13 -1.94 9.66 22.23 0.21 -1.72 16 5 C -0.09 -1.06 10.04 22.33 0.22 -0.83 16 6 C -0.14 -1.88 10.03 22.23 0.22 -1.65 16 7 C -0.09 -1.55 9.53 22.52 0.21 -1.33 16 8 C -0.16 -3.39 5.87 -20.09 -0.12 -3.51 16 9 C 0.55 13.78 7.64 86.79 0.66 14.45 16 10 O -0.56 -16.59 11.60 -3.87 -0.04 -16.64 16 11 N -0.71 -16.22 5.50 -469.70 -2.58 -18.81 16 12 C 0.19 4.56 5.80 85.63 0.50 5.06 16 13 C -0.18 -5.28 5.25 -19.84 -0.10 -5.39 16 14 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 15 C -0.20 -8.15 9.99 22.39 0.22 -7.93 16 16 C 0.12 5.83 6.65 22.58 0.15 5.98 16 17 O -0.23 -13.30 9.76 -22.89 -0.22 -13.52 16 18 C -0.41 -23.47 9.49 67.92 0.64 -22.82 16 19 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 20 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 21 N -0.92 -55.35 13.67 21.61 0.30 -55.06 16 22 Si 1.02 41.83 29.55 68.60 2.03 43.85 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 C -0.24 -9.96 9.17 22.39 0.21 -9.76 16 27 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 28 H 0.04 1.00 6.59 -2.39 -0.02 0.98 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 1.88 5.95 -2.39 -0.01 1.87 16 32 H 0.08 1.22 8.03 -2.39 -0.02 1.20 16 33 H 0.15 1.42 8.05 -2.91 -0.02 1.40 16 34 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.14 1.99 6.45 -2.91 -0.02 1.97 16 37 H 0.41 8.17 6.53 -92.71 -0.61 7.56 16 38 H 0.07 1.77 8.09 -2.38 -0.02 1.75 16 39 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 44 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -71.04 368.80 4.57 -66.47 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.43 Total: 30.60 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 4.67 Total: -36.90 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -2.29 Total: -73.86 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.27 Total: -30.16 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -71.04 4.57 -66.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178310491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.152 kcal (2) G-P(sol) polarization free energy of solvation -71.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds