Wall clock time and date at job start Tue Mar 31 2020 14:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47413 * 2 1 4 4 C 1.38256 * 120.00325 * 265.00476 * 3 2 1 5 5 C 1.38211 * 120.00062 * 180.27920 * 4 3 2 6 6 C 1.38259 * 119.99788 * 359.45940 * 5 4 3 7 7 S 1.76206 * 120.00134 * 180.28322 * 6 5 4 8 8 O 1.42097 * 106.39897 * 23.81555 * 7 6 5 9 9 O 1.42097 * 106.40178 * 156.74126 * 7 6 5 10 10 N 1.65599 * 107.21634 * 270.27776 * 7 6 5 11 11 C 1.46505 * 119.99918 * 64.99920 * 10 7 6 12 12 C 1.53000 * 109.47237 * 165.00452 * 11 10 7 13 13 C 1.52998 * 109.47126 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46865 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00150 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99859 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00087 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00234 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46882 * 59.99815 * 18 16 14 20 20 H 1.48500 * 109.47787 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47138 * 300.00255 * 18 16 14 22 22 C 1.38212 * 120.00042 * 0.55987 * 6 5 4 23 23 C 1.38214 * 119.99514 * 85.02077 * 3 2 1 24 24 C 1.50701 * 120.00231 * 0.02562 * 23 3 2 25 25 C 1.53002 * 109.46674 * 84.99924 * 24 23 3 26 26 H 1.08997 * 109.46816 * 59.99784 * 1 2 3 27 27 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47088 * 300.00061 * 1 2 3 29 29 H 1.09007 * 109.47478 * 240.00282 * 2 1 3 30 30 H 1.09002 * 109.47236 * 120.00357 * 2 1 3 31 31 H 1.08002 * 119.99676 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00348 * 179.72205 * 5 4 3 33 33 H 0.96995 * 120.00577 * 245.00304 * 10 7 6 34 34 H 1.09006 * 109.47056 * 284.99827 * 11 10 7 35 35 H 1.08994 * 109.47340 * 44.99863 * 11 10 7 36 36 H 1.09006 * 109.46587 * 299.99662 * 12 11 10 37 37 H 1.08994 * 109.47437 * 59.99470 * 12 11 10 38 38 H 1.09006 * 109.46794 * 299.99146 * 13 12 11 39 39 H 1.08994 * 109.47713 * 59.99250 * 13 12 11 40 40 H 0.97012 * 120.00087 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00342 * 179.72710 * 22 6 5 42 42 H 1.09001 * 109.47074 * 205.00022 * 24 23 3 43 43 H 1.08997 * 109.46982 * 325.00189 * 24 23 3 44 44 H 1.08997 * 109.47200 * 60.00398 * 25 24 23 45 45 H 1.09005 * 109.46724 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47450 * 299.99868 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0379 -1.1927 5 6 2.8274 3.3390 -1.1922 6 6 2.9544 4.0272 0.0002 7 16 3.5417 5.6885 0.0003 8 8 3.2664 6.2114 -1.2919 9 8 3.0620 6.2836 1.1981 10 7 5.1908 5.6254 0.1376 11 6 5.9927 5.0286 -0.9336 12 6 7.4603 5.4205 -0.7508 13 6 8.2976 4.7979 -1.8697 14 6 9.7431 5.1844 -1.6900 15 1 10.0352 5.8118 -0.8609 16 6 10.6926 4.7371 -2.5840 17 7 10.3369 3.9727 -3.5934 18 14 12.4842 5.2168 -2.3617 19 1 12.9690 4.7244 -1.0472 20 1 13.2970 4.6124 -3.4477 21 1 12.6109 6.6955 -2.4137 22 6 2.6261 3.4103 1.1926 23 6 2.1648 2.1069 1.1925 24 6 1.8073 1.4340 2.4927 25 6 3.0052 0.6251 2.9944 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2583 1.5015 -2.1245 32 1 3.0885 3.8195 -2.1235 33 1 5.6259 5.9834 0.9271 34 1 5.8991 3.9432 -0.8959 35 1 5.6374 5.3907 -1.8983 36 1 7.5539 6.5059 -0.7884 37 1 7.8157 5.0585 0.2139 38 1 8.2041 3.7125 -1.8325 39 1 7.9422 5.1602 -2.8342 40 1 11.0050 3.6583 -4.2227 41 1 2.7295 3.9464 2.1244 42 1 1.5438 2.1899 3.2325 43 1 0.9591 0.7678 2.3358 44 1 3.8535 1.2913 3.1513 45 1 2.7465 0.1380 3.9346 46 1 3.2688 -0.1308 2.2546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179290025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:35 Heat of formation + Delta-G solvation = -87.330447 kcal Electronic energy + Delta-G solvation = -25308.018313 eV Core-core repulsion = 21709.152428 eV Total energy + Delta-G solvation = -3598.865885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09056 -37.19823 -35.97837 -35.78804 -35.10665 -33.79800 -33.23824 -30.86032 -30.25855 -29.46336 -26.38935 -24.91360 -23.99238 -22.99317 -21.94945 -21.23784 -20.56233 -19.13625 -17.68992 -17.18065 -16.69353 -16.41770 -15.88034 -15.61224 -14.84648 -14.58027 -14.51301 -14.40536 -14.25101 -13.99115 -13.91244 -13.60819 -13.13855 -12.71332 -12.56168 -12.38222 -12.34029 -12.17255 -12.08604 -11.98354 -11.89412 -11.67873 -11.62301 -11.54323 -11.38909 -10.93791 -10.92313 -10.75739 -10.65151 -10.57445 -9.92472 -9.47064 -9.32776 -9.23477 -9.10041 -8.98995 -8.37618 -6.02924 -4.05553 0.40452 0.70186 1.10909 3.00678 3.31965 3.33696 3.36552 3.39047 3.81394 4.23757 4.35685 4.43728 4.52617 4.55270 4.69043 4.86755 4.94498 4.99646 5.07107 5.13546 5.23473 5.30244 5.33102 5.35796 5.41970 5.50340 5.54154 5.60116 5.66570 5.72830 5.80490 5.80963 5.90909 5.96396 5.98122 6.05964 6.09408 6.29342 6.56794 6.66519 6.76296 6.95454 7.16141 7.61889 7.74926 7.95866 8.37764 9.00790 9.58662 11.08335 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002886 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.499093 B = 9698.346076 C =10582.203803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.027 4.027 4 C -0.136 4.136 5 C -0.019 4.019 6 C -0.675 4.675 7 S 2.694 3.306 8 O -0.958 6.958 9 O -0.968 6.968 10 N -1.113 6.113 11 C 0.113 3.887 12 C -0.115 4.115 13 C 0.022 3.978 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.015 4.015 23 C -0.105 4.105 24 C -0.088 4.088 25 C -0.150 4.150 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.142 0.858 33 H 0.417 0.583 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.435 -8.204 10.360 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.027 4.027 4 C -0.155 4.155 5 C -0.038 4.038 6 C -0.761 4.761 7 S 2.784 3.216 8 O -0.948 6.948 9 O -0.958 6.958 10 N -0.874 5.874 11 C -0.012 4.012 12 C -0.155 4.155 13 C -0.016 4.016 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.034 4.034 23 C -0.106 4.106 24 C -0.125 4.125 25 C -0.208 4.208 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.252 0.748 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.156 0.844 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.972 -7.637 9.964 24.442 hybrid contribution 1.363 -0.427 0.309 1.461 sum -19.609 -8.065 10.272 23.560 Atomic orbital electron populations 1.21755 0.94250 1.02029 1.02465 1.20745 0.96548 0.92407 1.03680 1.20065 0.94104 0.95779 0.92739 1.21174 1.01114 0.95282 0.97925 1.20967 0.92206 0.93917 0.96696 1.30971 1.18875 1.26735 0.99548 1.01798 0.72530 0.73726 0.73582 1.93587 1.83824 1.76436 1.40905 1.93563 1.79373 1.75200 1.47711 1.55487 1.24721 1.76320 1.30893 1.21604 0.93934 0.97009 0.88687 1.21849 0.90881 1.01104 1.01639 1.19069 0.93812 0.96037 0.92678 1.21179 0.92518 1.31263 1.11115 0.92660 1.25017 0.99047 0.95117 0.95231 1.69950 1.34080 1.34808 1.14562 0.86646 0.84793 0.78809 0.77663 1.20270 1.21291 1.20214 1.20763 0.92343 0.93797 0.96517 1.19836 1.01384 0.94278 0.95056 1.20617 0.98931 0.99490 0.93493 1.21795 0.97907 1.00137 1.00916 0.92332 0.92037 0.92312 0.90477 0.90093 0.85026 0.84042 0.74816 0.92159 0.90497 0.92344 0.92596 0.96344 0.96167 0.92896 0.84441 0.90740 0.90491 0.92199 0.92188 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.72 37.16 0.36 -0.56 16 2 C -0.10 -0.70 5.38 -27.88 -0.15 -0.85 16 3 C -0.03 -0.26 5.13 -104.62 -0.54 -0.80 16 4 C -0.14 -1.45 9.68 -39.58 -0.38 -1.83 16 5 C -0.02 -0.23 9.52 -39.58 -0.38 -0.60 16 6 C -0.67 -8.61 5.95 -39.58 -0.24 -8.85 16 7 S 2.69 37.87 5.74 -107.50 -0.62 37.26 16 8 O -0.96 -16.13 16.76 -57.17 -0.96 -17.09 16 9 O -0.97 -15.08 17.28 -57.17 -0.99 -16.07 16 10 N -1.11 -15.19 6.00 -10.61 -0.06 -15.26 16 11 C 0.11 1.81 6.22 -4.04 -0.03 1.78 16 12 C -0.12 -2.22 5.29 -26.73 -0.14 -2.36 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 C -0.01 -0.17 9.16 -39.58 -0.36 -0.54 16 23 C -0.10 -1.07 5.13 -104.62 -0.54 -1.61 16 24 C -0.09 -0.68 5.38 -27.88 -0.15 -0.83 16 25 C -0.15 -1.10 9.72 37.16 0.36 -0.74 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 6.80 -51.93 -0.35 0.01 16 29 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 30 H 0.08 0.53 5.62 -51.93 -0.29 0.23 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 1.64 7.62 -52.49 -0.40 1.24 16 33 H 0.42 4.95 8.65 -34.47 -0.30 4.66 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.26 7.75 -51.93 -0.40 0.85 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.32 8.31 -40.81 -0.34 6.98 16 41 H 0.14 1.43 7.62 -52.49 -0.40 1.03 16 42 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 43 H 0.08 0.50 5.63 -51.93 -0.29 0.21 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.43 6.80 -51.93 -0.35 0.07 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -33.71 385.75 -11.22 -44.94 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.40 Total: 0.39 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -2.73 Total: -30.63 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.67 Total: -40.98 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.95 Total: -33.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 37.87 SS G_CDS: -0.62 Total: 37.26 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.71 -11.22 -44.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179290025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.395 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds