Wall clock time and date at job start Tue Mar 31 2020 14:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47413 * 2 1 4 4 C 1.38256 * 120.00325 * 265.00476 * 3 2 1 5 5 C 1.38211 * 120.00062 * 180.27920 * 4 3 2 6 6 C 1.38259 * 119.99788 * 359.45940 * 5 4 3 7 7 S 1.76206 * 120.00134 * 180.28322 * 6 5 4 8 8 O 1.42097 * 106.39897 * 23.81555 * 7 6 5 9 9 O 1.42097 * 106.40178 * 156.74126 * 7 6 5 10 10 N 1.65599 * 107.21634 * 270.27776 * 7 6 5 11 11 C 1.46505 * 119.99918 * 64.99920 * 10 7 6 12 12 C 1.53000 * 109.47237 * 165.00452 * 11 10 7 13 13 C 1.52998 * 109.47126 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46865 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00150 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99859 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00087 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00234 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46882 * 59.99815 * 18 16 14 20 20 H 1.48500 * 109.47787 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47138 * 300.00255 * 18 16 14 22 22 C 1.38212 * 120.00042 * 0.55987 * 6 5 4 23 23 C 1.38214 * 119.99514 * 85.02077 * 3 2 1 24 24 C 1.50701 * 120.00231 * 0.02562 * 23 3 2 25 25 C 1.53002 * 109.46674 * 84.99924 * 24 23 3 26 26 H 1.08997 * 109.46816 * 59.99784 * 1 2 3 27 27 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47088 * 300.00061 * 1 2 3 29 29 H 1.09007 * 109.47478 * 240.00282 * 2 1 3 30 30 H 1.09002 * 109.47236 * 120.00357 * 2 1 3 31 31 H 1.08002 * 119.99676 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00348 * 179.72205 * 5 4 3 33 33 H 0.96995 * 120.00577 * 245.00304 * 10 7 6 34 34 H 1.09006 * 109.47056 * 284.99827 * 11 10 7 35 35 H 1.08994 * 109.47340 * 44.99863 * 11 10 7 36 36 H 1.09006 * 109.46587 * 299.99662 * 12 11 10 37 37 H 1.08994 * 109.47437 * 59.99470 * 12 11 10 38 38 H 1.09006 * 109.46794 * 299.99146 * 13 12 11 39 39 H 1.08994 * 109.47713 * 59.99250 * 13 12 11 40 40 H 0.97012 * 120.00087 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00342 * 179.72710 * 22 6 5 42 42 H 1.09001 * 109.47074 * 205.00022 * 24 23 3 43 43 H 1.08997 * 109.46982 * 325.00189 * 24 23 3 44 44 H 1.08997 * 109.47200 * 60.00398 * 25 24 23 45 45 H 1.09005 * 109.46724 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47450 * 299.99868 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0379 -1.1927 5 6 2.8274 3.3390 -1.1922 6 6 2.9544 4.0272 0.0002 7 16 3.5417 5.6885 0.0003 8 8 3.2664 6.2114 -1.2919 9 8 3.0620 6.2836 1.1981 10 7 5.1908 5.6254 0.1376 11 6 5.9927 5.0286 -0.9336 12 6 7.4603 5.4205 -0.7508 13 6 8.2976 4.7979 -1.8697 14 6 9.7431 5.1844 -1.6900 15 1 10.0352 5.8118 -0.8609 16 6 10.6926 4.7371 -2.5840 17 7 10.3369 3.9727 -3.5934 18 14 12.4842 5.2168 -2.3617 19 1 12.9690 4.7244 -1.0472 20 1 13.2970 4.6124 -3.4477 21 1 12.6109 6.6955 -2.4137 22 6 2.6261 3.4103 1.1926 23 6 2.1648 2.1069 1.1925 24 6 1.8073 1.4340 2.4927 25 6 3.0052 0.6251 2.9944 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2583 1.5015 -2.1245 32 1 3.0885 3.8195 -2.1235 33 1 5.6259 5.9834 0.9271 34 1 5.8991 3.9432 -0.8959 35 1 5.6374 5.3907 -1.8983 36 1 7.5539 6.5059 -0.7884 37 1 7.8157 5.0585 0.2139 38 1 8.2041 3.7125 -1.8325 39 1 7.9422 5.1602 -2.8342 40 1 11.0050 3.6583 -4.2227 41 1 2.7295 3.9464 2.1244 42 1 1.5438 2.1899 3.2325 43 1 0.9591 0.7678 2.3358 44 1 3.8535 1.2913 3.1513 45 1 2.7465 0.1380 3.9346 46 1 3.2688 -0.1308 2.2546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179290025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:34 Heat of formation + Delta-G solvation = -108.188287 kcal Electronic energy + Delta-G solvation = -25308.922777 eV Core-core repulsion = 21709.152428 eV Total energy + Delta-G solvation = -3599.770348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87884 -38.42797 -37.40324 -37.02582 -35.84119 -35.16693 -34.44796 -32.64433 -31.00320 -30.18959 -28.21155 -25.58115 -24.85449 -24.64838 -22.64116 -22.27302 -21.99321 -20.28569 -18.73131 -18.57220 -18.26772 -17.50660 -16.83975 -16.66900 -16.46558 -16.07552 -15.71538 -15.46692 -14.96305 -14.75972 -14.59081 -14.30656 -14.25044 -14.07720 -13.90653 -13.73954 -13.37374 -13.26662 -13.22207 -13.18590 -13.06610 -12.78943 -12.74168 -12.53114 -12.38681 -12.33560 -12.16698 -12.11065 -11.72011 -11.54359 -11.45656 -11.38805 -11.16171 -10.52674 -10.47257 -10.12272 -9.81534 -8.18021 -6.28351 -0.68396 -0.22930 0.26129 1.42132 1.44527 1.52272 1.93630 2.39795 2.43196 2.72778 3.15750 3.25018 3.65967 3.71070 3.81916 4.02906 4.06093 4.14001 4.25293 4.30026 4.41663 4.42026 4.48481 4.51073 4.52148 4.67128 4.71548 4.74603 4.90673 4.97660 4.98801 5.01561 5.05489 5.08942 5.15442 5.18922 5.22460 5.28739 5.34643 5.44943 5.53873 5.54730 5.76226 5.86291 5.87457 6.05357 6.26646 6.88360 7.40608 8.93507 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002886 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.499093 B = 9698.346076 C =10582.203803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.026 4.026 4 C -0.143 4.143 5 C -0.038 4.038 6 C -0.683 4.683 7 S 2.711 3.289 8 O -0.989 6.989 9 O -0.983 6.983 10 N -1.107 6.107 11 C 0.122 3.878 12 C -0.104 4.104 13 C 0.023 3.977 14 C -0.544 4.544 15 H 0.061 0.939 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.029 4.029 23 C -0.108 4.108 24 C -0.087 4.087 25 C -0.150 4.150 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.426 0.574 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.000 1.000 39 H -0.004 1.004 40 H 0.263 0.737 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.751 -9.378 11.841 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.026 4.026 4 C -0.161 4.161 5 C -0.058 4.058 6 C -0.772 4.772 7 S 2.804 3.196 8 O -0.979 6.979 9 O -0.974 6.974 10 N -0.869 5.869 11 C -0.004 4.004 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.048 4.048 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.207 4.207 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.163 0.837 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.280 -8.767 11.469 25.715 hybrid contribution 1.390 -0.140 -0.144 1.404 sum -19.891 -8.908 11.324 24.561 Atomic orbital electron populations 1.21753 0.93343 1.03026 1.02209 1.20828 0.97189 0.90607 1.04651 1.20453 0.92875 0.97063 0.92252 1.21472 1.00593 0.94765 0.99310 1.21112 0.93257 0.94908 0.96511 1.30622 1.20482 1.25660 1.00459 1.01014 0.72121 0.74022 0.72439 1.93543 1.84234 1.77820 1.42336 1.93534 1.79527 1.76203 1.48107 1.55254 1.24515 1.76417 1.30684 1.21342 0.92177 0.97717 0.89126 1.21623 0.92022 1.00723 0.99967 1.18976 0.93875 0.95112 0.93559 1.21671 0.94049 1.31188 1.11271 0.92032 1.25940 1.03878 0.95042 0.94899 1.70081 1.35630 1.36004 1.15494 0.85545 0.79063 0.78733 0.77963 1.19127 1.20988 1.19389 1.20993 0.92755 0.94725 0.96364 1.20181 1.00420 0.93779 0.96470 1.20694 0.99618 0.99856 0.92267 1.21796 0.97273 0.99876 1.01751 0.92926 0.90426 0.92281 0.89689 0.89004 0.83120 0.84272 0.73717 0.91120 0.91115 0.92186 0.91411 0.98152 0.98605 0.92799 0.83690 0.90132 0.88857 0.93385 0.90543 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.72 71.98 0.70 -0.75 16 2 C -0.10 -1.14 5.38 29.85 0.16 -0.98 16 3 C -0.03 -0.47 5.13 -19.86 -0.10 -0.57 16 4 C -0.14 -2.90 9.68 22.27 0.22 -2.68 16 5 C -0.04 -0.94 9.52 22.27 0.21 -0.73 16 6 C -0.68 -17.37 5.95 22.27 0.13 -17.24 16 7 S 2.71 76.80 5.74 -56.49 -0.32 76.47 16 8 O -0.99 -34.09 16.76 -128.00 -2.15 -36.23 16 9 O -0.98 -30.53 17.28 -128.00 -2.21 -32.74 16 10 N -1.11 -29.91 6.00 -187.48 -1.12 -31.03 16 11 C 0.12 3.92 6.22 86.38 0.54 4.46 16 12 C -0.10 -4.00 5.29 30.59 0.16 -3.84 16 13 C 0.02 1.15 4.97 29.85 0.15 1.30 16 14 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.00 0.02 5.46 84.65 0.46 0.48 16 17 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 18 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.03 -0.66 9.16 22.27 0.20 -0.45 16 23 C -0.11 -2.03 5.13 -19.86 -0.10 -2.14 16 24 C -0.09 -1.14 5.38 29.85 0.16 -0.98 16 25 C -0.15 -1.87 9.72 71.98 0.70 -1.17 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.59 6.80 -2.39 -0.02 0.57 16 29 H 0.08 0.90 8.05 -2.38 -0.02 0.88 16 30 H 0.09 0.92 5.62 -2.39 -0.01 0.90 16 31 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.14 3.34 7.62 -2.91 -0.02 3.32 16 33 H 0.43 9.81 8.65 -96.75 -0.84 8.97 16 34 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.07 2.37 7.75 -2.39 -0.02 2.35 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.00 0.00 8.14 -2.38 -0.02 -0.01 16 39 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 40 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 41 H 0.15 2.93 7.62 -2.91 -0.02 2.91 16 42 H 0.08 0.97 8.05 -2.39 -0.02 0.95 16 43 H 0.09 0.93 5.63 -2.39 -0.01 0.91 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.06 0.72 6.80 -2.39 -0.02 0.70 16 Total: -1.00 -72.00 385.75 0.46 -71.54 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.13 Total: 17.20 kcal Atomic # 6 Polarization: -59.13 SS G_CDS: 3.82 Total: -55.30 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -0.84 Total: -86.66 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -4.36 Total: -68.97 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 76.80 SS G_CDS: -0.32 Total: 76.47 kcal Total: -72.00 0.46 -71.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179290025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.647 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds