Wall clock time and date at job start Tue Mar 31 2020 13:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.87950 * 2 1 4 4 C 1.37961 * 120.20728 * 179.97438 * 3 2 1 5 5 C 1.39609 * 119.96542 * 359.97438 * 4 3 2 6 6 C 1.47859 * 120.11690 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99996 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00021 * 359.71992 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27513 * 8 6 5 10 10 H 1.08999 * 109.46845 * 325.00503 * 9 8 6 11 11 C 1.52995 * 109.47455 * 205.00257 * 9 8 6 12 12 C 1.50702 * 109.47148 * 65.00169 * 11 9 8 13 13 H 1.08003 * 119.99859 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00235 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99919 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46950 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47054 * 120.00091 * 16 14 12 19 19 H 1.48504 * 109.46798 * 239.99709 * 16 14 12 20 20 C 1.50697 * 109.46928 * 85.00210 * 9 8 6 21 21 C 1.38241 * 120.00139 * 39.73030 * 20 9 8 22 22 C 1.38230 * 120.00034 * 179.81376 * 21 20 9 23 23 C 1.38241 * 120.00126 * 0.39077 * 22 21 20 24 24 C 1.38233 * 119.99819 * 359.86101 * 23 22 21 25 25 C 1.38235 * 120.00064 * 359.95451 * 24 23 22 26 26 C 1.39484 * 119.76159 * 0.25304 * 5 4 3 27 27 C 1.38490 * 119.79875 * 359.51326 * 26 5 4 28 28 O 1.35906 * 119.98982 * 180.20628 * 27 26 5 29 29 H 1.09003 * 109.47151 * 90.00676 * 1 2 3 30 30 H 1.09003 * 109.47088 * 209.99761 * 1 2 3 31 31 H 1.08993 * 109.47609 * 330.00613 * 1 2 3 32 32 H 1.07993 * 119.89440 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.01928 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99727 * 0.28409 * 8 6 5 35 35 H 1.09000 * 109.47218 * 184.99988 * 11 9 8 36 36 H 1.09000 * 109.47293 * 305.00154 * 11 9 8 37 37 H 0.96998 * 120.00002 * 180.02562 * 15 14 12 38 38 H 1.07998 * 119.99235 * 359.97438 * 21 20 9 39 39 H 1.07999 * 119.99942 * 180.23022 * 22 21 20 40 40 H 1.07999 * 119.99588 * 179.83942 * 23 22 21 41 41 H 1.07996 * 120.00002 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.99885 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.09902 * 179.75210 * 26 5 4 44 44 H 0.96696 * 114.00314 * 270.26485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1991 0.0000 4 6 3.5755 1.2070 0.0005 5 6 4.2797 0.0015 0.0016 6 6 5.7583 0.0061 0.0016 7 8 6.3693 -1.0448 0.0021 8 7 6.4286 1.1753 -0.0051 9 6 7.8936 1.1798 -0.0112 10 1 8.2619 0.3411 0.5795 11 6 8.4021 2.4907 0.5919 12 6 8.0093 2.5608 2.0451 13 1 7.4523 1.7514 2.4936 14 6 8.3601 3.6585 2.8020 15 7 9.0380 4.6444 2.2557 16 14 7.8738 3.7450 4.6035 17 1 7.1227 2.5185 4.9728 18 1 9.0954 3.8492 5.4415 19 1 7.0164 4.9365 4.8281 20 6 8.3903 1.0528 -1.4283 21 6 7.7463 1.7261 -2.4495 22 6 8.2044 1.6127 -3.7488 23 6 9.3015 0.8194 -4.0281 24 6 9.9424 0.1420 -3.0077 25 6 9.4866 0.2585 -1.7078 26 6 3.5835 -1.2071 -0.0032 27 6 2.1986 -1.2036 0.0012 28 8 1.5163 -2.3790 0.0008 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6522 2.1322 -0.0004 33 1 4.1104 2.1452 0.0001 34 1 5.9410 2.0138 -0.0058 35 1 9.4879 2.5328 0.5066 36 1 7.9627 3.3319 0.0558 37 1 9.2852 5.4165 2.7883 38 1 6.8869 2.3429 -2.2317 39 1 7.7035 2.1417 -4.5460 40 1 9.6577 0.7288 -5.0436 41 1 10.7992 -0.4781 -3.2259 42 1 9.9876 -0.2705 -0.9105 43 1 4.1227 -2.1428 -0.0064 44 1 1.3195 -2.7193 -0.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181244830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:48 Heat of formation + Delta-G solvation = -41.629202 kcal Electronic energy + Delta-G solvation = -26719.618426 eV Core-core repulsion = 22987.290345 eV Total energy + Delta-G solvation = -3732.328081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33451 -39.36126 -38.33226 -36.57860 -35.24374 -33.00212 -32.67032 -31.15594 -30.47954 -29.93554 -28.86201 -27.30061 -24.92258 -22.75453 -22.61579 -22.26444 -21.94790 -20.49847 -19.77985 -18.46522 -17.09925 -16.65409 -16.25199 -16.08389 -15.46047 -15.15870 -15.10010 -14.88080 -14.51387 -14.23572 -14.09682 -13.78821 -13.51222 -13.20982 -13.03963 -12.78823 -12.60013 -12.51026 -12.24310 -12.12464 -11.81696 -11.61456 -11.51715 -11.14213 -10.95257 -10.76674 -10.73036 -10.59770 -10.47883 -9.80300 -9.53411 -9.28927 -8.94799 -8.71407 -8.55350 -8.47771 -8.42269 -8.19745 -6.10983 -4.14500 0.80632 1.19170 1.76781 1.79486 2.99007 3.25363 3.34253 3.39429 3.59170 3.86260 4.11975 4.24086 4.39009 4.65246 4.70565 4.99924 5.08369 5.24299 5.25611 5.26382 5.27001 5.35556 5.37854 5.46303 5.52799 5.59314 5.78482 5.88965 5.90712 5.92997 6.12495 6.21903 6.28514 6.32959 6.34681 6.42920 6.55804 6.62372 6.83525 6.84154 6.86233 7.09329 7.39341 7.46944 7.48864 7.59246 7.85933 8.06520 8.23724 8.68316 8.91869 9.51033 10.99474 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007763 B = 0.004633 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3605.823857 B = 6041.518629 C = 8672.330534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.114 4.114 4 C -0.088 4.088 5 C -0.113 4.113 6 C 0.553 3.447 7 O -0.545 6.545 8 N -0.692 5.692 9 C 0.184 3.816 10 H 0.089 0.911 11 C 0.023 3.977 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.071 4.071 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.084 4.084 27 C 0.091 3.909 28 O -0.494 6.494 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.400 0.600 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.596 -6.881 -10.855 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.132 4.132 4 C -0.107 4.107 5 C -0.116 4.116 6 C 0.340 3.660 7 O -0.424 6.424 8 N -0.341 5.341 9 C 0.080 3.920 10 H 0.107 0.893 11 C -0.014 4.014 12 C -0.559 4.559 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.072 4.072 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.104 4.104 27 C 0.046 3.954 28 O -0.303 6.303 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.236 0.764 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.158 0.842 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.022 -7.379 -10.182 17.397 hybrid contribution -0.381 0.595 0.538 0.888 sum -12.402 -6.784 -9.644 17.113 Atomic orbital electron populations 1.20731 0.90588 1.03401 1.02340 1.20383 0.96815 0.92588 0.99671 1.20891 0.93818 0.97381 1.01066 1.21440 0.94399 0.97627 0.97205 1.19965 0.93727 0.93632 1.04316 1.18170 0.86587 0.84438 0.76848 1.90732 1.69519 1.31481 1.50658 1.45901 1.07778 1.07771 1.72695 1.20291 0.78110 1.03190 0.90432 0.89335 1.19404 0.97461 0.88926 0.95598 1.21181 1.35786 1.04200 0.94733 0.92295 1.24977 0.94992 0.95668 0.98407 1.69969 1.38574 1.08175 1.36306 0.86559 0.78377 0.78021 0.85247 1.19678 1.20944 1.20998 1.20530 0.95169 0.95088 0.96446 1.20901 0.99936 0.99351 0.92435 1.21036 0.97266 0.99500 0.96484 1.20998 0.96933 0.98671 0.98683 1.21043 0.99905 1.00058 0.93056 1.21024 0.96683 0.98362 0.96555 1.21511 0.92987 0.98751 0.97119 1.18118 0.89387 0.85011 1.02857 1.84824 1.75982 1.36172 1.33340 0.91162 0.90769 0.91250 0.85016 0.84828 0.76386 0.94611 0.95697 0.92908 0.86617 0.86729 0.86828 0.86579 0.86134 0.84163 0.75753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.78 36.00 0.35 -0.56 16 2 C -0.09 -1.02 5.90 -104.39 -0.62 -1.64 16 3 C -0.11 -1.25 9.67 -39.66 -0.38 -1.63 16 4 C -0.09 -1.13 9.54 -39.17 -0.37 -1.50 16 5 C -0.11 -1.74 5.87 -104.98 -0.62 -2.36 16 6 C 0.55 10.25 7.73 -12.32 -0.10 10.15 16 7 O -0.54 -11.77 16.01 5.32 0.09 -11.68 16 8 N -0.69 -12.64 3.97 -55.88 -0.22 -12.87 16 9 C 0.18 3.75 2.12 -69.09 -0.15 3.60 16 10 H 0.09 1.98 7.44 -51.93 -0.39 1.59 16 11 C 0.02 0.56 4.50 -27.88 -0.13 0.43 16 12 C -0.52 -13.72 8.84 -34.44 -0.30 -14.02 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 16 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 21 C -0.11 -1.81 9.33 -39.58 -0.37 -2.18 16 22 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 23 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 24 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 26 C -0.08 -1.22 9.53 -39.02 -0.37 -1.59 16 27 C 0.09 1.11 6.67 -39.27 -0.26 0.85 16 28 O -0.49 -5.13 12.53 -19.44 -0.24 -5.37 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.55 6.40 -52.49 -0.34 1.21 16 34 H 0.40 6.62 6.63 -40.82 -0.27 6.35 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 38 H 0.12 1.80 7.71 -52.49 -0.40 1.40 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.12 2.01 8.04 -52.48 -0.42 1.59 16 43 H 0.14 2.10 7.65 -52.49 -0.40 1.70 16 44 H 0.39 2.14 9.06 45.56 0.41 2.56 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -32.72 377.54 -9.59 -42.31 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.12 Total: 10.29 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -5.50 Total: -19.76 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.51 Total: -37.49 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.16 Total: -17.06 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.72 -9.59 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181244830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.683 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds