Wall clock time and date at job start Tue Mar 31 2020 13:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.87950 * 2 1 4 4 C 1.37961 * 120.20728 * 179.97438 * 3 2 1 5 5 C 1.39609 * 119.96542 * 359.97438 * 4 3 2 6 6 C 1.47859 * 120.11690 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99996 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00021 * 359.71992 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27513 * 8 6 5 10 10 H 1.08999 * 109.46845 * 325.00503 * 9 8 6 11 11 C 1.52995 * 109.47455 * 205.00257 * 9 8 6 12 12 C 1.50702 * 109.47148 * 65.00169 * 11 9 8 13 13 H 1.08003 * 119.99859 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00235 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99919 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46950 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47054 * 120.00091 * 16 14 12 19 19 H 1.48504 * 109.46798 * 239.99709 * 16 14 12 20 20 C 1.50697 * 109.46928 * 85.00210 * 9 8 6 21 21 C 1.38241 * 120.00139 * 39.73030 * 20 9 8 22 22 C 1.38230 * 120.00034 * 179.81376 * 21 20 9 23 23 C 1.38241 * 120.00126 * 0.39077 * 22 21 20 24 24 C 1.38233 * 119.99819 * 359.86101 * 23 22 21 25 25 C 1.38235 * 120.00064 * 359.95451 * 24 23 22 26 26 C 1.39484 * 119.76159 * 0.25304 * 5 4 3 27 27 C 1.38490 * 119.79875 * 359.51326 * 26 5 4 28 28 O 1.35906 * 119.98982 * 180.20628 * 27 26 5 29 29 H 1.09003 * 109.47151 * 90.00676 * 1 2 3 30 30 H 1.09003 * 109.47088 * 209.99761 * 1 2 3 31 31 H 1.08993 * 109.47609 * 330.00613 * 1 2 3 32 32 H 1.07993 * 119.89440 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.01928 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99727 * 0.28409 * 8 6 5 35 35 H 1.09000 * 109.47218 * 184.99988 * 11 9 8 36 36 H 1.09000 * 109.47293 * 305.00154 * 11 9 8 37 37 H 0.96998 * 120.00002 * 180.02562 * 15 14 12 38 38 H 1.07998 * 119.99235 * 359.97438 * 21 20 9 39 39 H 1.07999 * 119.99942 * 180.23022 * 22 21 20 40 40 H 1.07999 * 119.99588 * 179.83942 * 23 22 21 41 41 H 1.07996 * 120.00002 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.99885 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.09902 * 179.75210 * 26 5 4 44 44 H 0.96696 * 114.00314 * 270.26485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1991 0.0000 4 6 3.5755 1.2070 0.0005 5 6 4.2797 0.0015 0.0016 6 6 5.7583 0.0061 0.0016 7 8 6.3693 -1.0448 0.0021 8 7 6.4286 1.1753 -0.0051 9 6 7.8936 1.1798 -0.0112 10 1 8.2619 0.3411 0.5795 11 6 8.4021 2.4907 0.5919 12 6 8.0093 2.5608 2.0451 13 1 7.4523 1.7514 2.4936 14 6 8.3601 3.6585 2.8020 15 7 9.0380 4.6444 2.2557 16 14 7.8738 3.7450 4.6035 17 1 7.1227 2.5185 4.9728 18 1 9.0954 3.8492 5.4415 19 1 7.0164 4.9365 4.8281 20 6 8.3903 1.0528 -1.4283 21 6 7.7463 1.7261 -2.4495 22 6 8.2044 1.6127 -3.7488 23 6 9.3015 0.8194 -4.0281 24 6 9.9424 0.1420 -3.0077 25 6 9.4866 0.2585 -1.7078 26 6 3.5835 -1.2071 -0.0032 27 6 2.1986 -1.2036 0.0012 28 8 1.5163 -2.3790 0.0008 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6522 2.1322 -0.0004 33 1 4.1104 2.1452 0.0001 34 1 5.9410 2.0138 -0.0058 35 1 9.4879 2.5328 0.5066 36 1 7.9627 3.3319 0.0558 37 1 9.2852 5.4165 2.7883 38 1 6.8869 2.3429 -2.2317 39 1 7.7035 2.1417 -4.5460 40 1 9.6577 0.7288 -5.0436 41 1 10.7992 -0.4781 -3.2259 42 1 9.9876 -0.2705 -0.9105 43 1 4.1227 -2.1428 -0.0064 44 1 1.3195 -2.7193 -0.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181244830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:48 Heat of formation + Delta-G solvation = -61.507017 kcal Electronic energy + Delta-G solvation = -26720.480393 eV Core-core repulsion = 22987.290345 eV Total energy + Delta-G solvation = -3733.190048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53743 -40.55768 -39.60591 -37.52122 -36.85940 -34.78463 -33.87376 -32.50953 -31.71391 -30.92878 -30.54764 -28.33874 -26.62452 -23.97218 -23.78958 -23.58417 -23.27479 -21.74139 -21.19707 -19.63292 -18.68481 -17.97817 -17.73139 -17.34039 -16.59291 -16.56266 -16.25738 -16.21487 -16.05323 -15.57972 -15.32526 -14.79458 -14.65955 -14.50224 -14.20761 -14.16566 -14.11224 -13.70784 -13.46700 -13.25115 -13.13621 -12.96230 -12.76340 -12.64806 -12.52330 -12.38877 -12.16037 -11.89572 -11.68492 -11.62072 -11.34291 -10.99110 -10.59756 -10.12528 -9.89556 -9.77019 -9.59854 -9.52725 -8.22068 -6.32195 -0.24519 0.22910 0.49495 0.54727 1.36609 1.39774 1.51263 1.78911 2.20515 2.38564 2.72266 2.95595 3.11912 3.23983 3.67033 3.80566 3.93785 4.00277 4.01006 4.09449 4.19828 4.31079 4.34623 4.41433 4.61270 4.64748 4.74445 4.75737 4.77014 4.84778 4.90586 5.10455 5.17436 5.19868 5.21505 5.24285 5.29694 5.40490 5.44449 5.56957 5.59817 5.62857 5.75657 5.76048 5.88133 6.14339 6.18860 6.60524 6.80083 6.80128 7.22712 7.36967 8.88748 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007763 B = 0.004633 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3605.823857 B = 6041.518629 C = 8672.330534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.107 4.107 4 C -0.090 4.090 5 C -0.137 4.137 6 C 0.551 3.449 7 O -0.587 6.587 8 N -0.687 5.687 9 C 0.199 3.801 10 H 0.057 0.943 11 C 0.039 3.961 12 C -0.531 4.531 13 H 0.050 0.950 14 C 0.015 3.985 15 N -0.923 5.923 16 Si 0.954 3.046 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.272 1.272 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.102 4.102 27 C 0.093 3.907 28 O -0.499 6.499 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.408 0.592 35 H 0.006 0.994 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.121 0.879 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.103 -6.234 -12.224 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.140 4.140 6 C 0.340 3.660 7 O -0.469 6.469 8 N -0.336 5.336 9 C 0.094 3.906 10 H 0.075 0.925 11 C 0.001 3.999 12 C -0.569 4.569 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.100 4.100 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.153 4.153 26 C -0.122 4.122 27 C 0.049 3.951 28 O -0.312 6.312 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.245 0.755 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -14.552 -6.727 -11.571 19.771 hybrid contribution 0.348 0.332 0.888 1.010 sum -14.204 -6.394 -10.682 18.888 Atomic orbital electron populations 1.20813 0.87959 1.04114 1.03897 1.20779 0.98618 0.91794 0.97412 1.21261 0.92885 0.98881 0.99443 1.21577 0.95525 0.96796 0.97020 1.19732 0.91479 0.95243 1.07549 1.18712 0.88142 0.83564 0.75627 1.90690 1.70763 1.32734 1.52691 1.45763 1.06876 1.08359 1.72639 1.19787 0.79402 0.99779 0.91652 0.92471 1.19135 0.95495 0.90481 0.94774 1.21400 1.35539 1.03902 0.96028 0.93177 1.25723 0.94912 0.95306 1.02462 1.70068 1.39549 1.08766 1.37919 0.85567 0.78111 0.78154 0.80222 1.19740 1.20690 1.19753 1.20415 0.96603 0.97334 0.95601 1.21074 1.00265 0.99489 0.93165 1.21446 0.97311 0.99185 0.96190 1.21483 0.95967 0.97002 1.00168 1.21390 1.00584 1.00121 0.92022 1.21181 0.97002 0.99077 0.97997 1.21491 0.94280 0.97774 0.98613 1.18130 0.88497 0.86269 1.02246 1.84769 1.75381 1.35651 1.35387 0.89008 0.90907 0.89709 0.81671 0.84071 0.75473 0.97568 0.96630 0.92631 0.86105 0.83435 0.82982 0.83804 0.87007 0.85955 0.73182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.78 71.23 0.70 -0.65 16 2 C -0.09 -1.63 5.90 -19.71 -0.12 -1.74 16 3 C -0.11 -2.05 9.67 22.22 0.21 -1.84 16 4 C -0.09 -2.26 9.54 22.54 0.21 -2.04 16 5 C -0.14 -4.34 5.87 -20.10 -0.12 -4.46 16 6 C 0.55 21.73 7.73 86.79 0.67 22.40 16 7 O -0.59 -27.35 16.01 -3.88 -0.06 -27.42 16 8 N -0.69 -26.65 3.97 -448.98 -1.78 -28.43 16 9 C 0.20 8.73 2.12 44.24 0.09 8.82 16 10 H 0.06 2.82 7.44 -2.39 -0.02 2.80 16 11 C 0.04 1.95 4.50 29.85 0.13 2.09 16 12 C -0.53 -29.11 8.84 25.60 0.23 -28.89 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 14 C 0.01 0.83 5.46 84.65 0.46 1.29 16 15 N -0.92 -53.60 13.29 21.45 0.28 -53.32 16 16 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.10 -3.85 4.91 -19.86 -0.10 -3.95 16 21 C -0.12 -4.11 9.33 22.27 0.21 -3.90 16 22 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 23 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 24 C -0.12 -3.60 10.05 22.27 0.22 -3.37 16 25 C -0.13 -4.90 9.67 22.27 0.22 -4.68 16 26 C -0.10 -3.03 9.53 22.63 0.22 -2.81 16 27 C 0.09 2.17 6.67 22.47 0.15 2.32 16 28 O -0.50 -9.57 12.53 -92.49 -1.16 -10.73 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.95 7.52 -2.39 -0.02 0.93 16 31 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.14 3.19 6.40 -2.91 -0.02 3.17 16 34 H 0.41 14.16 6.63 -92.71 -0.61 13.54 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.12 3.81 7.71 -2.91 -0.02 3.79 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 42 H 0.11 4.10 8.04 -2.91 -0.02 4.07 16 43 H 0.12 3.96 7.65 -2.91 -0.02 3.94 16 44 H 0.41 3.72 9.06 -74.06 -0.67 3.05 16 Total: -1.00 -74.19 377.54 2.90 -71.29 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.25 Total: 30.55 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.84 Total: -27.68 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.50 Total: -81.75 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.22 Total: -38.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -74.19 2.90 -71.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181244830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.781 kcal (2) G-P(sol) polarization free energy of solvation -74.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds