Wall clock time and date at job start Tue Mar 31 2020 15:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46914 * 2 1 4 4 C 1.53002 * 109.46914 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47213 * 179.97438 * 4 3 2 6 6 S 1.81395 * 109.46986 * 180.02562 * 5 4 3 7 7 O 1.42105 * 110.54530 * 291.62628 * 6 5 4 8 8 O 1.42101 * 110.54333 * 68.37799 * 6 5 4 9 9 N 1.65599 * 104.44748 * 180.02562 * 6 5 4 10 10 C 1.46496 * 120.00146 * 65.00260 * 9 6 5 11 11 H 1.09003 * 109.47010 * 334.99738 * 10 9 6 12 12 C 1.53004 * 109.47009 * 215.00238 * 10 9 6 13 13 C 1.50691 * 109.47368 * 64.99822 * 12 10 9 14 14 H 1.07995 * 120.00202 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00160 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46667 * 90.00608 * 17 15 13 19 19 H 1.48498 * 109.47192 * 209.99952 * 17 15 13 20 20 H 1.48492 * 109.47180 * 330.00410 * 17 15 13 21 21 C 1.50698 * 109.47639 * 95.00059 * 10 9 6 22 22 C 1.38236 * 119.99751 * 39.72138 * 21 10 9 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 10 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 220.00585 * 21 10 9 27 27 H 1.08995 * 109.47220 * 59.99787 * 1 2 3 28 28 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46811 * 300.00005 * 1 2 3 30 30 H 1.08995 * 109.46624 * 240.00155 * 2 1 3 31 31 H 1.09004 * 109.46896 * 119.99702 * 2 1 3 32 32 H 1.09003 * 109.46898 * 60.00147 * 3 2 1 33 33 H 1.08995 * 109.47351 * 300.00133 * 3 2 1 34 34 H 1.09004 * 109.46811 * 59.99995 * 4 3 2 35 35 H 1.09005 * 109.47229 * 300.00129 * 4 3 2 36 36 H 1.09003 * 109.46593 * 60.00151 * 5 4 3 37 37 H 1.08994 * 109.46870 * 300.00519 * 5 4 3 38 38 H 0.97001 * 120.00004 * 244.99733 * 9 6 5 39 39 H 1.09003 * 109.46966 * 184.99744 * 12 10 9 40 40 H 1.09001 * 109.47117 * 304.99468 * 12 10 9 41 41 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99990 * 0.02562 * 22 21 10 43 43 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 44 44 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 45 45 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00149 * 359.96952 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 16 5.8940 2.8850 -0.0028 7 8 6.3937 2.3947 1.2338 8 8 6.3916 2.3944 -1.2402 9 7 6.3072 4.4886 -0.0027 10 6 5.9718 5.3313 1.1477 11 1 5.1157 4.9065 1.6720 12 6 5.6252 6.7408 0.6635 13 6 4.3726 6.6908 -0.1728 14 1 3.8734 5.7482 -0.3418 15 6 3.8633 7.8487 -0.7214 16 7 4.4710 8.9966 -0.5152 17 14 2.3110 7.7866 -1.7587 18 1 1.1245 7.9733 -0.8855 19 1 2.3519 8.8677 -2.7759 20 1 2.2227 6.4697 -2.4391 21 6 7.1515 5.3975 2.0830 22 6 8.4329 5.4944 1.5736 23 6 9.5147 5.5594 2.4317 24 6 9.3159 5.5182 3.7990 25 6 8.0349 5.4160 4.3084 26 6 6.9527 5.3553 3.4503 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 3.7170 3.3990 0.8888 37 1 3.7162 3.3986 -0.8912 38 1 6.7714 4.8699 -0.7643 39 1 5.4622 7.3905 1.5234 40 1 6.4473 7.1313 0.0637 41 1 4.1129 9.8112 -0.9015 42 1 8.5885 5.5231 0.5052 43 1 10.5156 5.6396 2.0337 44 1 10.1613 5.5663 4.4693 45 1 7.8795 5.3834 5.3766 46 1 5.9519 5.2755 3.8483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184723153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:56 Heat of formation + Delta-G solvation = -82.174423 kcal Electronic energy + Delta-G solvation = -26014.585325 eV Core-core repulsion = 22415.943023 eV Total energy + Delta-G solvation = -3598.642303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.02058 -36.72687 -36.37242 -35.75505 -35.55803 -32.73128 -32.37089 -30.68173 -30.29536 -28.62742 -27.05728 -24.84396 -22.58816 -22.19833 -21.95347 -21.18130 -20.23823 -18.87634 -17.33375 -16.88661 -16.24293 -16.14901 -15.92374 -15.55825 -14.79743 -14.70682 -14.60516 -14.07038 -13.90389 -13.66698 -13.44775 -13.10380 -12.92502 -12.68036 -12.30330 -12.30115 -12.11758 -12.08435 -11.76162 -11.64760 -11.60830 -11.28840 -11.21279 -11.15299 -11.09915 -10.83239 -10.81356 -10.67633 -10.65544 -10.48959 -10.27967 -9.88782 -9.36184 -8.83310 -8.52779 -8.46903 -8.17089 -6.14483 -4.18477 0.64612 1.81083 1.84404 3.15852 3.21098 3.29275 3.29410 4.05140 4.23861 4.33543 4.51369 4.58015 4.78412 4.81204 5.03430 5.09216 5.22079 5.26553 5.27053 5.35501 5.36895 5.44374 5.53060 5.59238 5.64578 5.70010 5.76264 5.78787 5.89397 5.93620 5.95090 6.03393 6.14321 6.19239 6.23230 6.35893 6.48519 6.56898 6.86383 6.88813 7.11317 7.39771 7.43703 7.52626 7.67142 7.81663 8.19002 8.85647 9.46124 10.96098 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.005360 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.800005 B = 5222.183524 C = 7725.855525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.114 4.114 4 C -0.110 4.110 5 C -0.631 4.631 6 S 2.607 3.393 7 O -0.959 6.959 8 O -0.972 6.972 9 N -1.093 6.093 10 C 0.195 3.805 11 H 0.078 0.922 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.073 4.073 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.418 0.582 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -12.058 4.387 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.152 4.152 4 C -0.149 4.149 5 C -0.760 4.760 6 S 2.700 3.300 7 O -0.949 6.949 8 O -0.962 6.962 9 N -0.852 5.852 10 C 0.088 3.912 11 H 0.096 0.904 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.075 4.075 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.130 4.130 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.253 0.747 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.342 -12.660 4.486 13.436 hybrid contribution -1.351 0.823 -0.929 1.835 sum -1.009 -11.837 3.557 12.401 Atomic orbital electron populations 1.21776 0.95838 1.01444 1.01985 1.21580 0.95967 0.96897 1.02155 1.21590 0.93760 0.96861 1.03023 1.21321 0.98031 0.92464 1.03132 1.30663 1.27688 1.05040 1.12631 1.04900 0.77527 0.73383 0.74166 1.93595 1.76809 1.79052 1.45438 1.93558 1.78203 1.79143 1.45312 1.55337 1.73353 1.28491 1.27996 1.19981 0.91883 0.95988 0.83343 0.90387 1.19407 0.97241 0.87636 0.97016 1.21087 1.09553 0.93608 1.31806 0.92483 1.24971 0.97106 0.95568 0.96396 1.69949 1.39642 0.98440 1.44696 0.86679 0.83677 0.77887 0.80289 1.20634 1.21163 1.19836 1.20479 0.95674 0.97104 0.94268 1.20918 0.92109 0.99317 0.99734 1.21064 0.98520 1.01053 0.93643 1.20996 0.96808 1.02073 0.95271 1.21013 0.92839 1.01043 0.99177 1.20970 0.98882 1.00225 0.92875 0.92686 0.92881 0.92669 0.91900 0.91874 0.91326 0.91373 0.90693 0.90623 0.84694 0.84367 0.74706 0.94889 0.95301 0.92807 0.86324 0.86669 0.86840 0.86614 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.19 5.93 -26.73 -0.16 -1.34 16 3 C -0.11 -1.22 5.21 -26.73 -0.14 -1.36 16 4 C -0.11 -1.31 5.22 -26.73 -0.14 -1.45 16 5 C -0.63 -8.59 5.92 37.16 0.22 -8.37 16 6 S 2.61 42.24 5.38 -107.50 -0.58 41.66 16 7 O -0.96 -17.64 17.77 -57.54 -1.02 -18.66 16 8 O -0.97 -17.95 18.08 -57.54 -1.04 -18.99 16 9 N -1.09 -18.73 4.36 -5.88 -0.03 -18.75 16 10 C 0.20 3.60 2.21 -69.08 -0.15 3.45 16 11 H 0.08 1.34 7.01 -51.93 -0.36 0.98 16 12 C 0.03 0.57 4.55 -27.89 -0.13 0.45 16 13 C -0.52 -12.79 8.84 -34.44 -0.30 -13.10 16 14 H 0.06 1.30 7.70 -52.49 -0.40 0.89 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 17 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 22 C -0.10 -1.76 9.33 -39.58 -0.37 -2.13 16 23 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.13 1.73 7.44 -51.92 -0.39 1.34 16 37 H 0.14 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.42 6.91 8.59 -34.47 -0.30 6.61 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.12 1.92 7.55 -52.49 -0.40 1.53 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -31.73 393.58 -11.76 -43.49 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.75 Total: 8.42 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: -2.99 Total: -34.14 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.71 Total: -42.78 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -2.06 Total: -37.65 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 42.24 SS G_CDS: -0.58 Total: 41.66 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.73 -11.76 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184723153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.686 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds