Wall clock time and date at job start Tue Mar 31 2020 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46914 * 2 1 4 4 C 1.53002 * 109.46914 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47213 * 179.97438 * 4 3 2 6 6 S 1.81395 * 109.46986 * 180.02562 * 5 4 3 7 7 O 1.42105 * 110.54530 * 291.62628 * 6 5 4 8 8 O 1.42101 * 110.54333 * 68.37799 * 6 5 4 9 9 N 1.65599 * 104.44748 * 180.02562 * 6 5 4 10 10 C 1.46496 * 120.00146 * 65.00260 * 9 6 5 11 11 H 1.09003 * 109.47010 * 334.99738 * 10 9 6 12 12 C 1.53004 * 109.47009 * 215.00238 * 10 9 6 13 13 C 1.50691 * 109.47368 * 64.99822 * 12 10 9 14 14 H 1.07995 * 120.00202 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00160 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46667 * 90.00608 * 17 15 13 19 19 H 1.48498 * 109.47192 * 209.99952 * 17 15 13 20 20 H 1.48492 * 109.47180 * 330.00410 * 17 15 13 21 21 C 1.50698 * 109.47639 * 95.00059 * 10 9 6 22 22 C 1.38236 * 119.99751 * 39.72138 * 21 10 9 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 10 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 220.00585 * 21 10 9 27 27 H 1.08995 * 109.47220 * 59.99787 * 1 2 3 28 28 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46811 * 300.00005 * 1 2 3 30 30 H 1.08995 * 109.46624 * 240.00155 * 2 1 3 31 31 H 1.09004 * 109.46896 * 119.99702 * 2 1 3 32 32 H 1.09003 * 109.46898 * 60.00147 * 3 2 1 33 33 H 1.08995 * 109.47351 * 300.00133 * 3 2 1 34 34 H 1.09004 * 109.46811 * 59.99995 * 4 3 2 35 35 H 1.09005 * 109.47229 * 300.00129 * 4 3 2 36 36 H 1.09003 * 109.46593 * 60.00151 * 5 4 3 37 37 H 1.08994 * 109.46870 * 300.00519 * 5 4 3 38 38 H 0.97001 * 120.00004 * 244.99733 * 9 6 5 39 39 H 1.09003 * 109.46966 * 184.99744 * 12 10 9 40 40 H 1.09001 * 109.47117 * 304.99468 * 12 10 9 41 41 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99990 * 0.02562 * 22 21 10 43 43 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 44 44 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 45 45 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00149 * 359.96952 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 16 5.8940 2.8850 -0.0028 7 8 6.3937 2.3947 1.2338 8 8 6.3916 2.3944 -1.2402 9 7 6.3072 4.4886 -0.0027 10 6 5.9718 5.3313 1.1477 11 1 5.1157 4.9065 1.6720 12 6 5.6252 6.7408 0.6635 13 6 4.3726 6.6908 -0.1728 14 1 3.8734 5.7482 -0.3418 15 6 3.8633 7.8487 -0.7214 16 7 4.4710 8.9966 -0.5152 17 14 2.3110 7.7866 -1.7587 18 1 1.1245 7.9733 -0.8855 19 1 2.3519 8.8677 -2.7759 20 1 2.2227 6.4697 -2.4391 21 6 7.1515 5.3975 2.0830 22 6 8.4329 5.4944 1.5736 23 6 9.5147 5.5594 2.4317 24 6 9.3159 5.5182 3.7990 25 6 8.0349 5.4160 4.3084 26 6 6.9527 5.3553 3.4503 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 3.7170 3.3990 0.8888 37 1 3.7162 3.3986 -0.8912 38 1 6.7714 4.8699 -0.7643 39 1 5.4622 7.3905 1.5234 40 1 6.4473 7.1313 0.0637 41 1 4.1129 9.8112 -0.9015 42 1 8.5885 5.5231 0.5052 43 1 10.5156 5.6396 2.0337 44 1 10.1613 5.5663 4.4693 45 1 7.8795 5.3834 5.3766 46 1 5.9519 5.2755 3.8483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184723153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:55 Heat of formation + Delta-G solvation = -100.754834 kcal Electronic energy + Delta-G solvation = -26015.391032 eV Core-core repulsion = 22415.943023 eV Total energy + Delta-G solvation = -3599.448010 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28473 -38.11519 -37.26710 -37.16011 -36.94564 -34.62368 -33.24426 -31.95185 -31.52635 -30.34757 -27.94724 -26.51839 -23.80816 -23.44086 -23.19658 -21.97825 -21.62583 -20.19245 -18.80362 -18.35828 -17.80779 -17.29494 -17.16335 -16.74162 -16.39719 -16.01984 -15.93231 -15.14628 -14.89542 -14.70445 -14.51112 -14.39323 -14.23536 -14.14716 -13.91431 -13.53628 -13.27222 -13.12289 -13.06870 -12.99128 -12.91394 -12.81754 -12.52500 -12.48363 -12.39491 -12.09809 -11.99078 -11.90778 -11.84042 -11.68556 -11.42602 -11.24691 -11.21704 -10.53090 -10.24183 -9.69591 -9.46182 -8.13718 -6.22425 -0.64511 0.57709 0.62298 1.42727 1.44825 1.52633 1.83004 2.43479 2.79912 3.01718 3.21950 3.28023 3.57724 3.81802 3.97802 4.00690 4.02774 4.18077 4.24587 4.27658 4.33327 4.37600 4.51440 4.53942 4.61279 4.73469 4.79873 4.83080 4.88523 4.94129 4.97172 4.99519 5.12472 5.21226 5.26720 5.28842 5.38813 5.48512 5.50852 5.61467 5.66444 5.69971 5.84612 5.94179 6.18926 6.23231 6.27157 6.91996 7.45808 8.97600 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.005360 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.800005 B = 5222.183524 C = 7725.855525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.114 4.114 4 C -0.118 4.118 5 C -0.616 4.616 6 S 2.615 3.385 7 O -0.983 6.983 8 O -0.997 6.997 9 N -1.098 6.098 10 C 0.206 3.794 11 H 0.090 0.910 12 C 0.035 3.965 13 C -0.522 4.522 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.946 3.054 18 H -0.275 1.275 19 H -0.293 1.293 20 H -0.258 1.258 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.417 0.583 39 H 0.006 0.994 40 H 0.003 0.997 41 H 0.260 0.740 42 H 0.115 0.885 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 -13.597 5.191 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.153 4.153 4 C -0.157 4.157 5 C -0.749 4.749 6 S 2.712 3.288 7 O -0.973 6.973 8 O -0.987 6.987 9 N -0.855 5.855 10 C 0.099 3.901 11 H 0.108 0.892 12 C -0.003 4.003 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.772 3.228 18 H -0.201 1.201 19 H -0.219 1.219 20 H -0.182 1.182 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.252 0.748 39 H 0.024 0.976 40 H 0.021 0.979 41 H 0.069 0.931 42 H 0.133 0.867 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.451 -14.219 5.292 15.179 hybrid contribution -1.048 1.278 -1.125 1.999 sum -1.499 -12.941 4.167 13.678 Atomic orbital electron populations 1.21780 0.95266 1.02114 1.01923 1.21594 0.96480 0.95922 1.02672 1.21609 0.92626 0.97988 1.03059 1.21483 0.99045 0.91131 1.04025 1.30532 1.23986 1.06856 1.13505 1.04596 0.78685 0.72493 0.73065 1.93557 1.78320 1.79302 1.46086 1.93521 1.79657 1.79377 1.46170 1.55294 1.73891 1.28582 1.27728 1.19694 0.93008 0.93582 0.83801 0.89167 1.19189 0.95893 0.89869 0.95365 1.21574 1.09669 0.94075 1.30658 0.90595 1.25793 1.00116 0.95418 0.97894 1.70094 1.41527 0.99122 1.46451 0.85724 0.80195 0.78211 0.78653 1.20112 1.21912 1.18163 1.20534 0.95646 0.99023 0.94969 1.21106 0.92793 1.00494 1.00153 1.21421 0.99075 1.00340 0.94197 1.21449 0.97868 1.00341 0.95352 1.21428 0.92508 0.99724 1.00614 1.21267 1.00308 1.00631 0.92654 0.92856 0.91899 0.92641 0.91531 0.91289 0.91100 0.91571 0.90103 0.89681 0.83512 0.83844 0.74794 0.97604 0.97877 0.93143 0.86710 0.84321 0.83459 0.83550 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.55 16 2 C -0.13 -2.09 5.93 30.60 0.18 -1.91 16 3 C -0.11 -2.19 5.21 30.60 0.16 -2.03 16 4 C -0.12 -2.55 5.22 30.59 0.16 -2.39 16 5 C -0.62 -15.67 5.92 71.98 0.43 -15.24 16 6 S 2.62 83.48 5.38 -56.49 -0.30 83.18 16 7 O -0.98 -35.73 17.77 -127.65 -2.27 -37.99 16 8 O -1.00 -36.64 18.08 -127.65 -2.31 -38.95 16 9 N -1.10 -37.98 4.36 -172.52 -0.75 -38.73 16 10 C 0.21 7.71 2.21 44.25 0.10 7.81 16 11 H 0.09 3.07 7.01 -2.39 -0.02 3.05 16 12 C 0.04 1.65 4.55 29.85 0.14 1.78 16 13 C -0.52 -25.58 8.84 25.60 0.23 -25.35 16 14 H 0.08 3.34 7.70 -2.91 -0.02 3.32 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -53.23 13.29 21.45 0.28 -52.94 16 17 Si 0.95 40.90 29.54 68.60 2.03 42.93 16 18 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 21 C -0.10 -3.63 4.91 -19.87 -0.10 -3.72 16 22 C -0.13 -4.42 9.33 22.27 0.21 -4.21 16 23 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 24 C -0.13 -3.49 10.05 22.27 0.22 -3.26 16 25 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.13 -4.23 9.67 22.27 0.22 -4.01 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.15 3.43 7.44 -2.39 -0.02 3.41 16 37 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.42 14.28 8.59 -96.74 -0.83 13.45 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.11 3.90 7.55 -2.91 -0.02 3.88 16 43 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.15 2.83 8.06 -2.92 -0.02 2.81 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.13 3.77 8.04 -2.91 -0.02 3.75 16 Total: -1.00 -68.25 393.58 0.35 -67.90 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.11 Total: 34.81 kcal Atomic # 6 Polarization: -63.76 SS G_CDS: 3.56 Total: -60.20 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -0.47 Total: -91.67 kcal Atomic # 8 Polarization: -72.37 SS G_CDS: -4.58 Total: -76.94 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 83.48 SS G_CDS: -0.30 Total: 83.18 kcal Total: -68.25 0.35 -67.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184723153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.857 kcal (2) G-P(sol) polarization free energy of solvation -68.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds