Wall clock time and date at job start Tue Mar 31 2020 14:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46951 * 2 1 4 4 C 1.38675 * 120.41611 * 90.00474 * 3 2 1 5 5 C 1.38634 * 118.41443 * 180.02562 * 4 3 2 6 6 C 1.38219 * 119.16329 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.61630 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47060 * 124.99952 * 7 6 5 9 9 O 1.45194 * 109.47003 * 180.02562 * 8 7 6 10 10 C 1.34705 * 117.00073 * 180.02562 * 9 8 7 11 11 O 1.21470 * 119.99849 * 359.97438 * 10 9 8 12 12 C 1.47764 * 120.00118 * 179.97438 * 10 9 8 13 13 C 1.39973 * 120.03125 * 359.72428 * 12 10 9 14 14 C 1.38319 * 120.35421 * 179.74432 * 13 12 10 15 15 C 1.37763 * 120.41411 * 0.55199 * 14 13 12 16 16 C 1.40747 * 120.05101 * 359.70381 * 15 14 13 17 17 C 1.41444 * 120.17162 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00089 * 150.17703 * 17 16 15 19 19 C 1.39933 * 120.00356 * 330.17165 * 17 16 15 20 20 N 1.30828 * 120.00315 * 161.73093 * 19 17 16 21 21 Si 1.86799 * 119.99925 * 341.73439 * 19 17 16 22 22 H 1.48504 * 109.47327 * 95.40819 * 21 19 17 23 23 H 1.48493 * 109.47545 * 215.41125 * 21 19 17 24 24 H 1.48510 * 109.47151 * 335.41071 * 21 19 17 25 25 C 1.39049 * 120.03330 * 179.97438 * 12 10 9 26 26 N 1.31856 * 120.76616 * 359.97438 * 6 5 4 27 27 C 1.31885 * 121.72193 * 359.70735 * 26 6 5 28 28 H 1.09000 * 109.47294 * 60.00023 * 1 2 3 29 29 H 1.08996 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47245 * 300.00263 * 1 2 3 31 31 H 1.08999 * 109.47245 * 239.99737 * 2 1 3 32 32 H 1.09007 * 109.46989 * 119.99738 * 2 1 3 33 33 H 1.07991 * 120.79064 * 0.02562 * 4 3 2 34 34 H 1.08008 * 120.41434 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.46740 * 244.99665 * 7 6 5 36 36 H 1.08994 * 109.47061 * 4.99780 * 7 6 5 37 37 H 1.08998 * 109.46968 * 299.99977 * 8 7 6 38 38 H 1.09003 * 109.46761 * 59.99795 * 8 7 6 39 39 H 1.07997 * 119.82055 * 359.97438 * 13 12 10 40 40 H 1.07998 * 119.79287 * 180.27621 * 14 13 12 41 41 H 1.07998 * 119.97029 * 179.72118 * 15 14 13 42 42 H 0.96994 * 119.99796 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.20439 * 359.96057 * 25 12 10 44 44 H 1.07998 * 119.61533 * 180.31103 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2664 2.0827 1.1959 5 6 2.7277 3.3892 1.1475 6 6 2.9379 3.9841 -0.0823 7 6 3.4386 5.4041 -0.1468 8 6 4.7110 5.4582 -0.9949 9 8 5.1937 6.8261 -1.0566 10 6 6.3143 7.0476 -1.7706 11 8 6.8731 6.1231 -2.3261 12 6 6.8637 8.4151 -1.8781 13 6 6.2171 9.4817 -1.2430 14 6 6.7285 10.7636 -1.3349 15 6 7.8733 11.0074 -2.0614 16 6 8.5345 9.9485 -2.7113 17 6 9.7103 10.1958 -3.4575 18 1 10.4651 9.4284 -3.5462 19 6 9.8959 11.4348 -4.0809 20 7 11.0926 11.8045 -4.4586 21 14 8.4346 12.5611 -4.3737 22 1 8.3361 13.5429 -3.2639 23 1 8.6157 13.2831 -5.6586 24 1 7.1902 11.7527 -4.4313 25 6 8.0207 8.6443 -2.6145 26 7 2.7054 3.3237 -1.1996 27 6 2.2722 2.0780 -1.1916 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0935 1.5922 2.1423 34 1 2.9203 3.9352 2.0592 35 1 2.6750 6.0385 -0.5967 36 1 3.6580 5.7581 0.8604 37 1 5.4746 4.8237 -0.5451 38 1 4.4915 5.1041 -2.0022 39 1 5.3161 9.3022 -0.6752 40 1 6.2246 11.5792 -0.8375 41 1 8.2638 12.0119 -2.1320 42 1 11.2212 12.6635 -4.8904 43 1 8.5213 7.8251 -3.1091 44 1 2.0978 1.5676 -2.1272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184730018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:40 Heat of formation + Delta-G solvation = -67.780683 kcal Electronic energy + Delta-G solvation = -25119.391912 eV Core-core repulsion = 21385.929818 eV Total energy + Delta-G solvation = -3733.462095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62781 -41.26155 -39.44970 -37.70415 -36.11769 -35.59513 -33.70924 -32.88816 -32.48483 -31.87433 -29.63457 -27.26824 -26.14251 -24.81434 -24.80116 -23.15855 -22.53407 -22.01505 -21.85835 -19.73066 -18.44048 -17.97108 -17.84622 -17.39917 -17.16189 -16.90127 -16.50026 -16.23072 -15.61032 -15.54627 -15.07732 -14.87005 -14.66370 -14.59867 -14.49524 -14.28197 -13.94102 -13.88472 -13.45206 -13.41620 -13.14828 -12.91102 -12.82324 -12.75411 -12.62598 -12.35809 -12.18285 -11.86564 -11.82056 -11.65656 -11.61748 -11.49482 -11.06489 -10.74652 -10.37125 -9.76205 -9.74096 -9.64847 -8.92238 -6.56880 -0.06556 0.07332 0.33416 0.70858 1.26380 1.42065 1.47536 1.57122 1.64568 2.11685 2.58367 2.75864 3.28053 3.38471 3.59474 3.82872 3.87978 3.91081 3.96959 4.03589 4.10930 4.23520 4.29369 4.40185 4.42727 4.48767 4.50593 4.57426 4.72234 4.78031 4.81764 4.84582 4.87207 4.94173 5.04949 5.08764 5.11204 5.20262 5.28242 5.36082 5.36409 5.40831 5.61931 5.67897 5.77228 5.80513 6.07361 6.26637 6.60125 6.69864 6.73423 7.01074 8.16489 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.035826 B = 0.001882 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.360224 B =14873.487472 C =15149.202947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.075 4.075 5 C -0.159 4.159 6 C 0.102 3.898 7 C -0.056 4.056 8 C 0.075 3.925 9 O -0.343 6.343 10 C 0.517 3.483 11 O -0.546 6.546 12 C -0.105 4.105 13 C -0.163 4.163 14 C -0.085 4.085 15 C -0.213 4.213 16 C 0.064 3.936 17 C -0.487 4.487 18 H 0.053 0.947 19 C 0.047 3.953 20 N -0.846 5.846 21 Si 0.964 3.036 22 H -0.244 1.244 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.159 4.159 26 N -0.512 5.512 27 C 0.085 3.915 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.112 0.888 42 H 0.296 0.704 43 H 0.096 0.904 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.894 -16.110 13.330 31.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.137 4.137 4 C -0.101 4.101 5 C -0.178 4.178 6 C -0.035 4.035 7 C -0.094 4.094 8 C 0.001 3.999 9 O -0.259 6.259 10 C 0.365 3.635 11 O -0.438 6.438 12 C -0.106 4.106 13 C -0.182 4.182 14 C -0.103 4.103 15 C -0.232 4.232 16 C 0.061 3.939 17 C -0.516 4.516 18 H 0.071 0.929 19 C -0.168 4.168 20 N -0.471 5.471 21 Si 0.786 3.214 22 H -0.168 1.168 23 H -0.203 1.203 24 H -0.176 1.176 25 C -0.179 4.179 26 N -0.222 5.222 27 C -0.072 4.072 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.383 -15.844 12.260 30.039 hybrid contribution 0.403 -0.334 -0.121 0.537 sum -21.980 -16.178 12.139 29.870 Atomic orbital electron populations 1.21742 0.93998 1.02654 1.01882 1.20536 0.96544 0.90275 1.04267 1.21230 0.99683 0.98937 0.93837 1.21875 0.95013 0.93917 0.99301 1.22267 1.00287 0.96398 0.98861 1.21066 0.97139 0.95799 0.89460 1.20393 0.94688 0.91993 1.02331 1.23002 0.96323 0.79115 1.01441 1.86495 1.40234 1.33193 1.66012 1.21572 0.77876 0.89581 0.74479 1.90762 1.60630 1.46267 1.46131 1.18975 0.97784 0.89885 1.03980 1.21138 1.01836 0.91375 1.03805 1.21091 0.94723 0.97168 0.97301 1.21492 1.00234 0.98430 1.03073 1.17725 0.92176 0.91796 0.92180 1.19429 1.02640 0.99700 1.29828 0.92918 1.26876 0.99353 0.98380 0.92200 1.69713 1.24400 1.22192 1.30830 0.85519 0.79141 0.78301 0.78478 1.16833 1.20301 1.17567 1.21208 0.96590 0.97154 1.02924 1.67416 1.12553 1.09958 1.32245 1.22946 0.95293 0.89944 0.98997 0.93247 0.90893 0.92619 0.90069 0.89406 0.81920 0.82022 0.88486 0.86564 0.92053 0.91994 0.83337 0.83078 0.87038 0.89348 0.88548 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 71.98 0.71 -0.35 16 2 C -0.08 -0.64 6.09 29.85 0.18 -0.45 16 3 C -0.13 -1.83 5.15 -19.77 -0.10 -1.93 16 4 C -0.08 -0.91 9.86 22.47 0.22 -0.69 16 5 C -0.16 -2.29 9.71 22.36 0.22 -2.07 16 6 C 0.10 2.08 6.18 42.55 0.26 2.34 16 7 C -0.06 -1.12 5.99 29.85 0.18 -0.94 16 8 C 0.08 2.13 5.33 71.98 0.38 2.51 16 9 O -0.34 -11.33 9.46 -56.15 -0.53 -11.87 16 10 C 0.52 21.28 7.90 70.34 0.56 21.83 16 11 O -0.55 -25.46 16.12 19.93 0.32 -25.14 16 12 C -0.11 -4.55 5.87 -20.14 -0.12 -4.67 16 13 C -0.16 -5.98 9.62 22.71 0.22 -5.76 16 14 C -0.09 -3.14 10.01 22.18 0.22 -2.91 16 15 C -0.21 -9.51 7.17 22.77 0.16 -9.35 16 16 C 0.06 3.28 5.10 -21.32 -0.11 3.17 16 17 C -0.49 -27.72 9.57 23.47 0.22 -27.50 16 18 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 19 C 0.05 2.50 5.40 85.25 0.46 2.96 16 20 N -0.85 -46.19 13.93 21.82 0.30 -45.88 16 21 Si 0.96 41.16 24.52 68.60 1.68 42.84 16 22 H -0.24 -9.39 6.71 99.48 0.67 -8.72 16 23 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.25 -11.01 6.87 99.48 0.68 -10.32 16 25 C -0.16 -7.95 9.34 23.02 0.21 -7.73 16 26 N -0.51 -12.13 9.88 -183.89 -1.82 -13.94 16 27 C 0.09 1.57 10.86 84.67 0.92 2.49 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 32 H 0.09 0.50 8.10 -2.38 -0.02 0.48 16 33 H 0.16 0.97 8.06 -2.92 -0.02 0.95 16 34 H 0.16 1.42 7.95 -2.91 -0.02 1.40 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.12 1.70 7.87 -2.39 -0.02 1.68 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.06 1.97 7.94 -2.39 -0.02 1.95 16 39 H 0.15 4.40 7.59 -2.91 -0.02 4.38 16 40 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 41 H 0.11 4.82 4.72 -2.91 -0.01 4.81 16 42 H 0.30 14.39 8.30 -92.71 -0.77 13.62 16 43 H 0.10 5.07 7.64 -2.91 -0.02 5.05 16 44 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -68.78 374.76 5.71 -63.07 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.94 Total: 19.99 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 4.81 Total: -29.07 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -1.51 Total: -59.83 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.21 Total: -37.00 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.68 Total: 42.84 kcal Total: -68.78 5.71 -63.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184730018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.706 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds