Wall clock time and date at job start Tue Mar 31 2020 15:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 113.99822 * 2 1 4 4 C 1.53005 * 109.46861 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47206 * 60.00354 * 5 4 3 7 7 C 1.53001 * 109.47466 * 300.00068 * 5 4 3 8 8 C 1.50701 * 109.47156 * 179.97438 * 5 4 3 9 9 O 1.21298 * 119.99781 * 0.02562 * 8 5 4 10 10 N 1.34776 * 120.00194 * 180.02562 * 8 5 4 11 11 C 1.40090 * 119.99928 * 185.61206 * 10 8 5 12 12 C 1.38711 * 120.07872 * 34.05873 * 11 10 8 13 13 C 1.38182 * 120.01964 * 179.97438 * 12 11 10 14 14 C 1.38555 * 120.17954 * 0.02562 * 13 12 11 15 15 F 1.35102 * 119.92146 * 179.97438 * 14 13 12 16 16 C 1.38334 * 120.15213 * 0.02562 * 14 13 12 17 17 C 1.38746 * 119.97893 * 359.97438 * 16 14 13 18 18 O 1.35768 * 120.08847 * 180.30340 * 17 16 14 19 19 C 1.34814 * 117.00015 * 354.18711 * 18 17 16 20 20 H 1.07997 * 120.00051 * 354.51631 * 19 18 17 21 21 C 1.38639 * 119.99858 * 174.52034 * 19 18 17 22 22 N 1.31564 * 120.00242 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99864 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46827 * 90.00211 * 23 21 19 25 25 H 1.48493 * 109.47441 * 209.99819 * 23 21 19 26 26 H 1.48504 * 109.47246 * 330.00342 * 23 21 19 27 27 H 1.08994 * 109.47708 * 59.99950 * 1 2 3 28 28 H 1.09006 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47301 * 299.99756 * 1 2 3 30 30 H 1.08994 * 109.47737 * 60.00068 * 3 2 1 31 31 H 1.09004 * 109.47340 * 299.99654 * 3 2 1 32 32 H 1.08998 * 109.47281 * 60.00141 * 4 3 2 33 33 H 1.08993 * 109.47056 * 299.99573 * 4 3 2 34 34 H 1.09000 * 109.47265 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.46396 * 299.99632 * 6 5 4 36 36 H 1.08995 * 109.47244 * 59.99135 * 6 5 4 37 37 H 1.09004 * 109.46888 * 299.99559 * 7 5 4 38 38 H 1.08994 * 109.47022 * 59.99987 * 7 5 4 39 39 H 1.08997 * 109.47057 * 180.02562 * 7 5 4 40 40 H 0.96994 * 120.00107 * 5.60276 * 10 8 5 41 41 H 1.07999 * 119.98818 * 359.97438 * 12 11 10 42 42 H 1.08008 * 119.91050 * 180.02562 * 13 12 11 43 43 H 1.08007 * 120.01561 * 180.02562 * 16 14 13 44 44 H 0.97000 * 120.00739 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5823 -0.0013 6 6 3.7069 3.3419 1.2480 7 6 3.7057 3.3413 -1.2505 8 6 5.6600 2.4634 -0.0013 9 8 6.1817 1.3683 -0.0013 10 7 6.4240 3.5737 -0.0013 11 6 7.8157 3.4664 -0.1199 12 6 8.3717 2.4604 -0.8964 13 6 9.7446 2.3560 -1.0130 14 6 10.5698 3.2539 -0.3554 15 9 11.9114 3.1467 -0.4726 16 6 10.0231 4.2593 0.4217 17 6 8.6455 4.3701 0.5433 18 8 8.1064 5.3598 1.3005 19 6 8.9626 6.1273 2.0043 20 1 10.0153 5.8869 2.0202 21 6 8.4915 7.2252 2.7077 22 7 7.2090 7.5178 2.6888 23 14 9.6777 8.2883 3.6835 24 1 10.1940 9.3778 2.8164 25 1 8.9710 8.8766 4.8494 26 1 10.8114 7.4558 4.1601 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8908 33 1 3.8574 0.6436 0.8891 34 1 4.1498 4.3378 1.2473 35 1 2.6202 3.4280 1.2484 36 1 4.0288 2.8012 2.1379 37 1 4.0270 2.8002 -2.1405 38 1 2.6192 3.4274 -1.2500 39 1 4.1494 4.3369 -1.2511 40 1 6.0102 4.4471 0.0807 41 1 7.7313 1.7586 -1.4100 42 1 10.1756 1.5722 -1.6185 43 1 10.6684 4.9583 0.9331 44 1 6.8793 8.2858 3.1812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185176313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:33 Heat of formation + Delta-G solvation = -139.041254 kcal Electronic energy + Delta-G solvation = -27892.907892 eV Core-core repulsion = 23725.586482 eV Total energy + Delta-G solvation = -4167.321409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.27331 -40.49291 -39.01528 -38.04759 -36.53419 -35.62800 -34.11185 -32.44039 -29.93749 -29.40735 -28.13716 -27.43085 -26.42078 -25.54908 -24.62372 -22.81120 -21.90124 -20.85307 -18.89597 -18.37318 -17.87454 -17.13396 -16.59170 -16.20184 -16.18793 -15.49814 -15.27110 -15.04821 -14.89686 -14.70882 -14.31456 -14.24331 -13.85533 -13.75398 -13.61928 -13.50788 -13.25353 -12.79816 -12.45865 -12.32245 -12.14955 -11.97994 -11.84003 -11.66361 -11.47492 -11.39679 -11.20204 -10.98603 -10.87790 -10.84429 -10.71490 -10.55635 -9.84161 -9.77079 -9.66330 -9.27721 -8.98741 -7.91979 -7.13875 -6.63505 -4.20869 1.76869 2.09030 2.94643 3.04711 3.06207 3.10601 3.30374 3.73496 3.83130 4.30393 4.62045 4.76350 4.77453 4.83474 4.92686 5.02319 5.03739 5.08599 5.16272 5.22019 5.26978 5.31387 5.43969 5.54993 5.55531 5.68290 5.72750 5.78046 5.86558 5.92657 5.99242 6.05240 6.21408 6.25056 6.31474 6.49003 6.73325 6.88735 6.89912 6.99884 7.03210 7.16286 7.60546 7.79853 7.89947 8.53070 8.82705 9.43383 10.53516 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.003560 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.240315 B = 7862.594106 C = 9907.631906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.058 3.942 4 C -0.093 4.093 5 C -0.075 4.075 6 C -0.149 4.149 7 C -0.146 4.146 8 C 0.520 3.480 9 O -0.532 6.532 10 N -0.647 5.647 11 C 0.061 3.939 12 C -0.049 4.049 13 C -0.228 4.228 14 C 0.130 3.870 15 F -0.151 7.151 16 C -0.258 4.258 17 C 0.158 3.842 18 O -0.167 6.167 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.858 5.858 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.266 1.266 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.414 0.586 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 -6.375 -5.710 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.018 4.018 4 C -0.131 4.131 5 C -0.078 4.078 6 C -0.206 4.206 7 C -0.203 4.203 8 C 0.307 3.693 9 O -0.409 6.409 10 N -0.291 5.291 11 C -0.033 4.033 12 C -0.070 4.070 13 C -0.248 4.248 14 C 0.110 3.890 15 F -0.130 7.130 16 C -0.279 4.279 17 C 0.102 3.898 18 O -0.070 6.070 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.161 4.161 22 N -0.492 5.492 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.191 1.191 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.251 0.749 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.160 -7.050 -5.563 13.560 hybrid contribution 0.545 1.275 0.597 1.510 sum -9.615 -5.775 -4.965 12.266 Atomic orbital electron populations 1.22724 0.81258 1.02619 0.99883 1.87882 1.19464 1.28305 1.95407 1.22736 0.94218 0.84451 1.00427 1.21266 0.92075 0.94932 1.04812 1.20660 0.91688 0.97243 0.98234 1.21991 1.01793 1.00851 0.95964 1.21965 1.01949 1.00429 0.95980 1.20429 0.88831 0.84107 0.75892 1.90681 1.74622 1.26526 1.49073 1.43165 1.04678 1.09986 1.71318 1.16851 0.82002 1.00372 1.04110 1.20454 0.93950 0.96650 0.95900 1.20451 0.93092 1.03160 1.08117 1.17448 0.76210 0.96656 0.98661 1.91414 1.30948 1.95824 1.94793 1.20873 0.95294 1.03428 1.08292 1.18828 0.90247 0.90398 0.90301 1.83928 1.35217 1.37282 1.50600 1.21342 0.91134 1.08015 1.26264 0.88865 1.25271 0.97014 0.96454 0.97392 1.69997 1.12658 1.26971 1.39622 0.85688 0.79262 0.79596 0.78855 1.19727 1.20140 1.19050 0.94184 0.89758 0.94134 0.92843 0.92974 0.90327 0.90221 0.90985 0.91414 0.91660 0.91831 0.91292 0.91452 0.74921 0.84758 0.85907 0.83945 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.58 10.70 -35.23 -0.38 -4.95 16 3 C 0.06 0.60 5.23 37.16 0.19 0.80 16 4 C -0.09 -1.16 3.93 -26.73 -0.11 -1.27 16 5 C -0.07 -0.94 0.65 -155.66 -0.10 -1.05 16 6 C -0.15 -1.79 8.01 37.16 0.30 -1.49 16 7 C -0.15 -1.51 8.03 37.16 0.30 -1.21 16 8 C 0.52 8.74 6.21 -10.99 -0.07 8.67 16 9 O -0.53 -10.45 13.74 5.54 0.08 -10.37 16 10 N -0.65 -11.67 4.98 -9.71 -0.05 -11.72 16 11 C 0.06 1.25 6.28 -83.45 -0.52 0.72 16 12 C -0.05 -0.94 8.65 -39.43 -0.34 -1.28 16 13 C -0.23 -4.22 10.02 -39.48 -0.40 -4.62 16 14 C 0.13 2.59 7.29 -39.43 -0.29 2.31 16 15 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 16 C -0.26 -5.61 9.11 -39.36 -0.36 -5.97 16 17 C 0.16 3.62 6.66 -38.93 -0.26 3.36 16 18 O -0.17 -4.31 9.30 0.04 0.00 -4.31 16 19 C -0.39 -10.22 9.44 30.88 0.29 -9.92 16 20 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 21 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 22 N -0.86 -22.97 13.67 55.48 0.76 -22.21 16 23 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 31 H 0.05 0.47 6.43 -51.93 -0.33 0.13 16 32 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.07 0.93 7.45 -51.93 -0.39 0.55 16 35 H 0.07 0.65 6.43 -51.92 -0.33 0.31 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 39 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 40 H 0.41 7.15 7.42 -40.82 -0.30 6.85 16 41 H 0.13 2.45 6.48 -52.49 -0.34 2.11 16 42 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 43 H 0.14 3.09 5.71 -52.48 -0.30 2.79 16 44 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -29.81 365.60 -5.26 -35.07 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.86 Total: 9.92 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.34 Total: -8.55 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.71 Total: -33.93 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.30 Total: -19.64 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.81 -5.26 -35.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185176313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.973 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds