Wall clock time and date at job start Tue Mar 31 2020 15:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 113.99822 * 2 1 4 4 C 1.53005 * 109.46861 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47206 * 60.00354 * 5 4 3 7 7 C 1.53001 * 109.47466 * 300.00068 * 5 4 3 8 8 C 1.50701 * 109.47156 * 179.97438 * 5 4 3 9 9 O 1.21298 * 119.99781 * 0.02562 * 8 5 4 10 10 N 1.34776 * 120.00194 * 180.02562 * 8 5 4 11 11 C 1.40090 * 119.99928 * 185.61206 * 10 8 5 12 12 C 1.38711 * 120.07872 * 34.05873 * 11 10 8 13 13 C 1.38182 * 120.01964 * 179.97438 * 12 11 10 14 14 C 1.38555 * 120.17954 * 0.02562 * 13 12 11 15 15 F 1.35102 * 119.92146 * 179.97438 * 14 13 12 16 16 C 1.38334 * 120.15213 * 0.02562 * 14 13 12 17 17 C 1.38746 * 119.97893 * 359.97438 * 16 14 13 18 18 O 1.35768 * 120.08847 * 180.30340 * 17 16 14 19 19 C 1.34814 * 117.00015 * 354.18711 * 18 17 16 20 20 H 1.07997 * 120.00051 * 354.51631 * 19 18 17 21 21 C 1.38639 * 119.99858 * 174.52034 * 19 18 17 22 22 N 1.31564 * 120.00242 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99864 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46827 * 90.00211 * 23 21 19 25 25 H 1.48493 * 109.47441 * 209.99819 * 23 21 19 26 26 H 1.48504 * 109.47246 * 330.00342 * 23 21 19 27 27 H 1.08994 * 109.47708 * 59.99950 * 1 2 3 28 28 H 1.09006 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47301 * 299.99756 * 1 2 3 30 30 H 1.08994 * 109.47737 * 60.00068 * 3 2 1 31 31 H 1.09004 * 109.47340 * 299.99654 * 3 2 1 32 32 H 1.08998 * 109.47281 * 60.00141 * 4 3 2 33 33 H 1.08993 * 109.47056 * 299.99573 * 4 3 2 34 34 H 1.09000 * 109.47265 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.46396 * 299.99632 * 6 5 4 36 36 H 1.08995 * 109.47244 * 59.99135 * 6 5 4 37 37 H 1.09004 * 109.46888 * 299.99559 * 7 5 4 38 38 H 1.08994 * 109.47022 * 59.99987 * 7 5 4 39 39 H 1.08997 * 109.47057 * 180.02562 * 7 5 4 40 40 H 0.96994 * 120.00107 * 5.60276 * 10 8 5 41 41 H 1.07999 * 119.98818 * 359.97438 * 12 11 10 42 42 H 1.08008 * 119.91050 * 180.02562 * 13 12 11 43 43 H 1.08007 * 120.01561 * 180.02562 * 16 14 13 44 44 H 0.97000 * 120.00739 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5823 -0.0013 6 6 3.7069 3.3419 1.2480 7 6 3.7057 3.3413 -1.2505 8 6 5.6600 2.4634 -0.0013 9 8 6.1817 1.3683 -0.0013 10 7 6.4240 3.5737 -0.0013 11 6 7.8157 3.4664 -0.1199 12 6 8.3717 2.4604 -0.8964 13 6 9.7446 2.3560 -1.0130 14 6 10.5698 3.2539 -0.3554 15 9 11.9114 3.1467 -0.4726 16 6 10.0231 4.2593 0.4217 17 6 8.6455 4.3701 0.5433 18 8 8.1064 5.3598 1.3005 19 6 8.9626 6.1273 2.0043 20 1 10.0153 5.8869 2.0202 21 6 8.4915 7.2252 2.7077 22 7 7.2090 7.5178 2.6888 23 14 9.6777 8.2883 3.6835 24 1 10.1940 9.3778 2.8164 25 1 8.9710 8.8766 4.8494 26 1 10.8114 7.4558 4.1601 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8908 33 1 3.8574 0.6436 0.8891 34 1 4.1498 4.3378 1.2473 35 1 2.6202 3.4280 1.2484 36 1 4.0288 2.8012 2.1379 37 1 4.0270 2.8002 -2.1405 38 1 2.6192 3.4274 -1.2500 39 1 4.1494 4.3369 -1.2511 40 1 6.0102 4.4471 0.0807 41 1 7.7313 1.7586 -1.4100 42 1 10.1756 1.5722 -1.6185 43 1 10.6684 4.9583 0.9331 44 1 6.8793 8.2858 3.1812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185176313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:32 Heat of formation + Delta-G solvation = -157.270229 kcal Electronic energy + Delta-G solvation = -27893.698360 eV Core-core repulsion = 23725.586482 eV Total energy + Delta-G solvation = -4168.111877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.85620 -41.91425 -40.56759 -39.01845 -38.11175 -36.79388 -35.61630 -34.32070 -31.22672 -30.82490 -29.58440 -28.34665 -27.41555 -27.12430 -25.68133 -24.26579 -23.47621 -22.24642 -20.19975 -20.15931 -19.44531 -18.41783 -18.01689 -17.29882 -17.08454 -16.98177 -16.89684 -16.56415 -16.11496 -15.94885 -15.82567 -15.50975 -15.44620 -15.18485 -14.89722 -14.71922 -14.63626 -14.04339 -13.84164 -13.61369 -13.46665 -13.36138 -13.05474 -12.87224 -12.64316 -12.55825 -12.35032 -12.32691 -12.15740 -12.10629 -11.84388 -11.77337 -11.68465 -11.18595 -10.84557 -10.68341 -10.51346 -9.59460 -8.79271 -8.51998 -6.17674 0.13838 0.43191 1.36971 1.43314 1.51560 1.55675 2.02332 2.14088 2.63633 2.86952 3.04113 3.14365 3.42318 3.45904 3.79272 3.81989 3.90756 4.11838 4.20194 4.22909 4.29420 4.32828 4.47009 4.58665 4.59898 4.60990 4.70496 4.77321 4.85885 4.87884 4.89260 4.94710 4.98381 5.00880 5.11932 5.19828 5.26854 5.31219 5.32375 5.33407 5.52847 5.91915 5.99817 6.28502 6.45495 6.92485 7.10779 7.60272 8.68339 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.003560 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.240315 B = 7862.594106 C = 9907.631906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.062 3.938 4 C -0.088 4.088 5 C -0.064 4.064 6 C -0.146 4.146 7 C -0.144 4.144 8 C 0.518 3.482 9 O -0.562 6.562 10 N -0.648 5.648 11 C 0.060 3.940 12 C -0.051 4.051 13 C -0.204 4.204 14 C 0.124 3.876 15 F -0.144 7.144 16 C -0.265 4.265 17 C 0.132 3.868 18 O -0.200 6.200 19 C -0.417 4.417 20 H 0.097 0.903 21 C -0.006 4.006 22 N -0.901 5.901 23 Si 1.009 2.991 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.261 1.261 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.416 0.584 41 H 0.148 0.852 42 H 0.158 0.842 43 H 0.136 0.864 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 -6.809 -6.605 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.341 6.341 3 C -0.014 4.014 4 C -0.126 4.126 5 C -0.068 4.068 6 C -0.204 4.204 7 C -0.201 4.201 8 C 0.307 3.693 9 O -0.441 6.441 10 N -0.293 5.293 11 C -0.034 4.034 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.104 3.896 15 F -0.123 7.123 16 C -0.285 4.285 17 C 0.078 3.922 18 O -0.105 6.105 19 C -0.493 4.493 20 H 0.114 0.886 21 C -0.206 4.206 22 N -0.537 5.537 23 Si 0.830 3.170 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.185 1.185 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.254 0.746 41 H 0.165 0.835 42 H 0.176 0.824 43 H 0.154 0.846 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.929 -7.511 -6.484 14.761 hybrid contribution 0.795 1.174 0.736 1.598 sum -10.133 -6.337 -5.749 13.262 Atomic orbital electron populations 1.22929 0.79373 1.03733 1.01046 1.87837 1.21588 1.29001 1.95659 1.22715 0.92236 0.84504 1.01968 1.21182 0.94111 0.94161 1.03148 1.20648 0.88264 0.98004 0.99838 1.21999 1.03803 0.99665 0.94905 1.21999 1.03823 0.99803 0.94451 1.21272 0.90577 0.83100 0.74350 1.90653 1.75617 1.27475 1.50322 1.43287 1.03911 1.10675 1.71389 1.17151 0.83235 0.99783 1.03276 1.20676 0.94524 0.96300 0.95604 1.20850 0.92614 1.02557 1.06349 1.17449 0.76725 0.96637 0.98813 1.91431 1.30369 1.95753 1.94724 1.20954 0.95036 1.03958 1.08589 1.19187 0.91171 0.90726 0.91112 1.83903 1.35710 1.38618 1.52250 1.21707 0.91542 1.08732 1.27287 0.88582 1.26333 0.98778 0.97360 0.98139 1.70098 1.14419 1.27967 1.41205 0.84702 0.77108 0.77767 0.77466 1.18803 1.19406 1.18461 0.92758 0.88843 0.93160 0.91678 0.90861 0.91401 0.92533 0.92148 0.88157 0.93244 0.91661 0.88349 0.91589 0.74644 0.83479 0.82421 0.84624 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -9.12 10.70 -148.98 -1.59 -10.72 16 3 C 0.06 1.14 5.23 71.98 0.38 1.52 16 4 C -0.09 -2.13 3.93 30.60 0.12 -2.01 16 5 C -0.06 -1.57 0.65 -52.93 -0.03 -1.60 16 6 C -0.15 -3.41 8.01 71.98 0.58 -2.84 16 7 C -0.14 -2.67 8.03 71.98 0.58 -2.09 16 8 C 0.52 17.42 6.21 87.66 0.54 17.96 16 9 O -0.56 -22.13 13.74 -3.09 -0.04 -22.17 16 10 N -0.65 -23.74 4.98 -303.03 -1.51 -25.25 16 11 C 0.06 2.50 6.28 38.23 0.24 2.74 16 12 C -0.05 -1.88 8.65 22.37 0.19 -1.69 16 13 C -0.20 -7.11 10.02 22.33 0.22 -6.89 16 14 C 0.12 4.80 7.29 22.37 0.16 4.96 16 15 F -0.14 -5.28 17.26 44.97 0.78 -4.50 16 16 C -0.26 -11.66 9.11 22.41 0.20 -11.46 16 17 C 0.13 6.19 6.66 22.69 0.15 6.34 16 18 O -0.20 -10.73 9.30 -22.78 -0.21 -10.94 16 19 C -0.42 -22.52 9.44 67.92 0.64 -21.88 16 20 H 0.10 4.92 5.30 -2.91 -0.02 4.90 16 21 C -0.01 -0.31 5.49 84.83 0.47 0.16 16 22 N -0.90 -49.64 13.67 21.61 0.30 -49.34 16 23 Si 1.01 40.38 29.55 68.60 2.03 42.41 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 25 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 1.06 8.14 -2.38 -0.02 1.05 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 1.04 6.43 -2.39 -0.02 1.03 16 31 H 0.07 1.05 6.43 -2.38 -0.02 1.03 16 32 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.06 1.56 7.45 -2.39 -0.02 1.54 16 35 H 0.10 1.67 6.43 -2.38 -0.02 1.66 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.27 6.43 -2.39 -0.02 1.26 16 39 H 0.07 1.27 7.70 -2.39 -0.02 1.25 16 40 H 0.42 14.83 7.42 -92.71 -0.69 14.15 16 41 H 0.15 5.13 6.48 -2.91 -0.02 5.11 16 42 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.14 6.07 5.71 -2.91 -0.02 6.05 16 44 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -66.26 365.60 5.79 -60.47 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.35 Total: 35.23 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.69 Total: -15.18 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -1.21 Total: -74.59 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.85 Total: -43.83 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -66.26 5.79 -60.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185176313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.804 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds