Wall clock time and date at job start Tue Mar 31 2020 13:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38232 * 120.00098 * 2 1 4 4 C 1.38237 * 119.99936 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99884 * 359.95735 * 4 3 2 6 6 S 1.76201 * 119.99554 * 180.02562 * 5 4 3 7 7 O 1.42096 * 104.28117 * 333.92807 * 6 5 4 8 8 O 1.42098 * 104.27262 * 206.07198 * 6 5 4 9 9 C 1.81400 * 104.44860 * 90.00197 * 6 5 4 10 10 C 1.53006 * 109.47028 * 179.97438 * 9 6 5 11 11 H 1.08996 * 109.46884 * 305.00587 * 10 9 6 12 12 C 1.52997 * 109.47127 * 184.99835 * 10 9 6 13 13 N 1.46902 * 109.46626 * 65.00170 * 10 9 6 14 14 C 1.46911 * 110.99614 * 205.00042 * 13 10 9 15 15 C 1.52993 * 109.46779 * 179.97438 * 14 13 10 16 16 C 1.53006 * 109.47136 * 179.97438 * 15 14 13 17 17 C 1.50691 * 109.47299 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00673 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00031 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99934 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00291 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47079 * 59.99863 * 21 19 17 23 23 H 1.48494 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46936 * 300.00179 * 21 19 17 25 25 C 1.38235 * 120.00065 * 0.27476 * 5 4 3 26 26 C 1.38232 * 119.99800 * 359.51446 * 25 5 4 27 27 H 1.09003 * 109.46665 * 89.99961 * 1 2 3 28 28 H 1.09001 * 109.47249 * 209.99818 * 1 2 3 29 29 H 1.08993 * 109.46827 * 330.00050 * 1 2 3 30 30 H 1.08001 * 120.00128 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.99711 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.46944 * 59.99928 * 9 6 5 33 33 H 1.09000 * 109.47288 * 299.99822 * 9 6 5 34 34 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 36 36 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 37 37 H 1.00896 * 111.00679 * 81.04935 * 13 10 9 38 38 H 1.09000 * 109.46786 * 299.99838 * 14 13 10 39 39 H 1.09000 * 109.46923 * 59.99884 * 14 13 10 40 40 H 1.09000 * 109.47888 * 300.00082 * 15 14 13 41 41 H 1.09000 * 109.47454 * 60.00250 * 15 14 13 42 42 H 1.09000 * 109.46821 * 300.00118 * 16 15 14 43 43 H 1.09000 * 109.46532 * 59.99946 * 16 15 14 44 44 H 0.97005 * 120.00228 * 179.97438 * 20 19 17 45 45 H 1.07997 * 119.99924 * 179.72715 * 25 5 4 46 46 H 1.08003 * 119.99598 * 180.25074 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0020 6 16 6.0337 -0.0001 0.0033 7 8 6.3847 1.2364 -0.6025 8 8 6.3846 -1.2375 -0.6007 9 6 6.4850 0.0012 1.7603 10 6 8.0091 0.0007 1.8954 11 1 8.4226 -0.8417 1.3410 12 6 8.3901 -0.1239 3.3719 13 7 8.5489 1.2553 1.3546 14 6 9.9404 1.0838 0.9159 15 6 10.4666 2.4083 0.3595 16 6 11.9161 2.2299 -0.0968 17 6 12.4346 3.5347 -0.6442 18 1 11.7946 4.4044 -0.6643 19 6 13.7262 3.6182 -1.1195 20 7 14.5057 2.5594 -1.0947 21 14 14.3687 5.2354 -1.7988 22 1 14.3078 6.2758 -0.7409 23 1 15.7755 5.0622 -2.2416 24 1 13.5338 5.6539 -2.9533 25 6 3.5805 -1.1972 -0.0029 26 6 2.1982 -1.1972 0.0010 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6583 2.1325 -0.0004 31 1 4.1206 2.1324 0.0001 32 1 6.0777 -0.8884 2.2406 33 1 6.0777 0.8915 2.2394 34 1 9.4759 -0.1238 3.4682 35 1 7.9895 -1.0548 3.7732 36 1 7.9765 0.7185 3.9263 37 1 8.4717 2.0024 2.0283 38 1 10.5532 0.7762 1.7632 39 1 9.9850 0.3205 0.1390 40 1 9.8538 2.7157 -0.4879 41 1 10.4220 3.1720 1.1360 42 1 12.5287 1.9229 0.7509 43 1 11.9611 1.4662 -0.8732 44 1 15.4143 2.6180 -1.4294 45 1 4.1205 -2.1325 -0.0062 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185339479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:04 Heat of formation + Delta-G solvation = -65.686151 kcal Electronic energy + Delta-G solvation = -24886.085033 eV Core-core repulsion = 21288.157716 eV Total energy + Delta-G solvation = -3597.927317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.65198 -37.67880 -36.95055 -35.74108 -34.14126 -33.39434 -32.24972 -31.38159 -29.79478 -27.96777 -27.56610 -25.82911 -23.20022 -22.61948 -22.22696 -21.25695 -20.01066 -19.02050 -17.87291 -16.58761 -16.33213 -16.14302 -15.67810 -15.56433 -15.05909 -14.75811 -14.70864 -14.36799 -14.28378 -14.15469 -13.88413 -13.34441 -12.99228 -12.80804 -12.74235 -12.67151 -12.36982 -12.29211 -12.15400 -11.86040 -11.83883 -11.60034 -11.48147 -11.36759 -11.28050 -10.88593 -10.77963 -10.51640 -10.49121 -10.47626 -9.61849 -9.41634 -9.38365 -9.26624 -9.00179 -8.30485 -8.26510 -5.92288 -3.93823 0.05068 0.54132 0.96373 2.94058 3.14008 3.39595 3.43175 3.46546 3.89797 3.99310 4.20160 4.34585 4.38775 4.50800 4.55022 4.57952 4.68218 4.88388 4.96704 5.02312 5.07990 5.14505 5.24898 5.28639 5.31698 5.43413 5.52498 5.54705 5.60743 5.62368 5.79914 5.81950 5.84518 5.85799 5.99396 6.07179 6.36213 6.50729 6.76174 6.79770 7.19674 7.27202 7.53377 7.76612 7.91987 8.08507 8.52069 9.13089 9.69581 11.19178 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.002338 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.545454 B =11971.616225 C =12642.538487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.144 4.144 4 C -0.018 4.018 5 C -0.670 4.670 6 S 2.506 3.494 7 O -0.904 6.904 8 O -0.944 6.944 9 C -0.594 4.594 10 C 0.087 3.913 11 H 0.093 0.907 12 C -0.173 4.173 13 N -0.691 5.691 14 C 0.057 3.943 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.517 4.517 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.893 3.107 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.276 1.276 25 C -0.023 4.023 26 C -0.145 4.145 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.347 0.653 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.013 0.987 43 H 0.017 0.983 44 H 0.260 0.740 45 H 0.141 0.859 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.904 -8.787 9.203 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.038 4.038 3 C -0.163 4.163 4 C -0.037 4.037 5 C -0.755 4.755 6 S 2.684 3.316 7 O -0.901 6.901 8 O -0.941 6.941 9 C -0.724 4.724 10 C -0.024 4.024 11 H 0.111 0.889 12 C -0.233 4.233 13 N -0.322 5.322 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.042 4.042 26 C -0.164 4.164 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.166 0.834 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.158 0.842 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -28.492 -8.945 7.789 30.862 hybrid contribution 0.148 0.761 1.140 1.378 sum -28.345 -8.185 8.928 30.824 Atomic orbital electron populations 1.20934 0.90682 1.03334 1.02994 1.20272 0.96434 0.93402 0.93690 1.21209 0.94285 0.97965 1.02839 1.21035 0.94622 0.97010 0.91022 1.30985 1.27373 0.99261 1.17867 1.05401 0.73327 0.75129 0.77780 1.93608 1.80677 1.43631 1.72217 1.93549 1.82044 1.45316 1.73211 1.30359 1.05540 1.11249 1.25264 1.21244 0.89649 0.95197 0.96349 0.88899 1.22418 1.02530 1.02525 0.95808 1.60764 1.22670 1.05089 1.43702 1.22226 0.85257 1.00922 0.98731 1.21645 0.99452 0.93585 1.00008 1.19071 0.89113 0.97169 0.96255 1.21225 0.97403 0.96543 1.40390 0.92663 1.25033 0.97077 0.96416 0.96082 1.69957 1.07738 1.28766 1.47216 0.86648 0.77737 0.84073 0.79468 1.20334 1.21391 1.20192 1.20983 0.94672 0.96842 0.91692 1.21177 0.94230 0.97935 1.03063 0.90380 0.91027 0.90976 0.85083 0.83772 0.85081 0.84677 0.91478 0.91907 0.91988 0.83401 0.95099 0.91197 0.91943 0.93539 0.96840 0.96478 0.93047 0.84163 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.04 -0.29 5.88 -104.62 -0.62 -0.90 16 3 C -0.14 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.02 -0.18 9.47 -39.58 -0.37 -0.55 16 5 C -0.67 -7.12 5.66 -39.58 -0.22 -7.35 16 6 S 2.51 31.18 5.00 -107.50 -0.54 30.64 16 7 O -0.90 -14.66 16.54 -57.54 -0.95 -15.61 16 8 O -0.94 -14.42 17.12 -57.54 -0.99 -15.41 16 9 C -0.59 -5.27 5.64 37.16 0.21 -5.06 16 10 C 0.09 0.99 2.58 -67.71 -0.17 0.82 16 11 H 0.09 1.10 7.80 -51.93 -0.40 0.69 16 12 C -0.17 -1.60 9.16 37.16 0.34 -1.26 16 13 N -0.69 -9.88 5.44 -106.72 -0.58 -10.46 16 14 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 15 C -0.11 -2.34 5.41 -26.73 -0.14 -2.48 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.62 13.29 55.43 0.74 -26.89 16 21 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 C -0.02 -0.22 9.47 -39.58 -0.37 -0.60 16 26 C -0.15 -1.16 9.70 -39.58 -0.38 -1.54 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.14 1.30 7.57 -52.48 -0.40 0.90 16 32 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.13 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 37 H 0.35 4.41 8.47 -39.29 -0.33 4.08 16 38 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 39 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.14 1.15 7.57 -52.49 -0.40 0.75 16 46 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -36.91 391.92 -11.52 -48.44 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.75 Total: -0.65 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: -2.34 Total: -33.25 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.16 Total: -37.35 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.94 Total: -31.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.54 Total: 30.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.91 -11.52 -48.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185339479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.247 kcal (2) G-P(sol) polarization free energy of solvation -36.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds