Wall clock time and date at job start Tue Mar 31 2020 13:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38232 * 120.00098 * 2 1 4 4 C 1.38237 * 119.99936 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99884 * 359.95735 * 4 3 2 6 6 S 1.76201 * 119.99554 * 180.02562 * 5 4 3 7 7 O 1.42096 * 104.28117 * 333.92807 * 6 5 4 8 8 O 1.42098 * 104.27262 * 206.07198 * 6 5 4 9 9 C 1.81400 * 104.44860 * 90.00197 * 6 5 4 10 10 C 1.53006 * 109.47028 * 179.97438 * 9 6 5 11 11 H 1.08996 * 109.46884 * 305.00587 * 10 9 6 12 12 C 1.52997 * 109.47127 * 184.99835 * 10 9 6 13 13 N 1.46902 * 109.46626 * 65.00170 * 10 9 6 14 14 C 1.46911 * 110.99614 * 205.00042 * 13 10 9 15 15 C 1.52993 * 109.46779 * 179.97438 * 14 13 10 16 16 C 1.53006 * 109.47136 * 179.97438 * 15 14 13 17 17 C 1.50691 * 109.47299 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00673 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00031 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99934 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00291 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47079 * 59.99863 * 21 19 17 23 23 H 1.48494 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46936 * 300.00179 * 21 19 17 25 25 C 1.38235 * 120.00065 * 0.27476 * 5 4 3 26 26 C 1.38232 * 119.99800 * 359.51446 * 25 5 4 27 27 H 1.09003 * 109.46665 * 89.99961 * 1 2 3 28 28 H 1.09001 * 109.47249 * 209.99818 * 1 2 3 29 29 H 1.08993 * 109.46827 * 330.00050 * 1 2 3 30 30 H 1.08001 * 120.00128 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.99711 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.46944 * 59.99928 * 9 6 5 33 33 H 1.09000 * 109.47288 * 299.99822 * 9 6 5 34 34 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 36 36 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 37 37 H 1.00896 * 111.00679 * 81.04935 * 13 10 9 38 38 H 1.09000 * 109.46786 * 299.99838 * 14 13 10 39 39 H 1.09000 * 109.46923 * 59.99884 * 14 13 10 40 40 H 1.09000 * 109.47888 * 300.00082 * 15 14 13 41 41 H 1.09000 * 109.47454 * 60.00250 * 15 14 13 42 42 H 1.09000 * 109.46821 * 300.00118 * 16 15 14 43 43 H 1.09000 * 109.46532 * 59.99946 * 16 15 14 44 44 H 0.97005 * 120.00228 * 179.97438 * 20 19 17 45 45 H 1.07997 * 119.99924 * 179.72715 * 25 5 4 46 46 H 1.08003 * 119.99598 * 180.25074 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0020 6 16 6.0337 -0.0001 0.0033 7 8 6.3847 1.2364 -0.6025 8 8 6.3846 -1.2375 -0.6007 9 6 6.4850 0.0012 1.7603 10 6 8.0091 0.0007 1.8954 11 1 8.4226 -0.8417 1.3410 12 6 8.3901 -0.1239 3.3719 13 7 8.5489 1.2553 1.3546 14 6 9.9404 1.0838 0.9159 15 6 10.4666 2.4083 0.3595 16 6 11.9161 2.2299 -0.0968 17 6 12.4346 3.5347 -0.6442 18 1 11.7946 4.4044 -0.6643 19 6 13.7262 3.6182 -1.1195 20 7 14.5057 2.5594 -1.0947 21 14 14.3687 5.2354 -1.7988 22 1 14.3078 6.2758 -0.7409 23 1 15.7755 5.0622 -2.2416 24 1 13.5338 5.6539 -2.9533 25 6 3.5805 -1.1972 -0.0029 26 6 2.1982 -1.1972 0.0010 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6583 2.1325 -0.0004 31 1 4.1206 2.1324 0.0001 32 1 6.0777 -0.8884 2.2406 33 1 6.0777 0.8915 2.2394 34 1 9.4759 -0.1238 3.4682 35 1 7.9895 -1.0548 3.7732 36 1 7.9765 0.7185 3.9263 37 1 8.4717 2.0024 2.0283 38 1 10.5532 0.7762 1.7632 39 1 9.9850 0.3205 0.1390 40 1 9.8538 2.7157 -0.4879 41 1 10.4220 3.1720 1.1360 42 1 12.5287 1.9229 0.7509 43 1 11.9611 1.4662 -0.8732 44 1 15.4143 2.6180 -1.4294 45 1 4.1205 -2.1325 -0.0062 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185339479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:03 Heat of formation + Delta-G solvation = -91.197682 kcal Electronic energy + Delta-G solvation = -24887.191296 eV Core-core repulsion = 21288.157716 eV Total energy + Delta-G solvation = -3599.033580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27605 -38.79587 -38.00854 -36.80485 -35.98482 -34.09577 -33.95545 -32.01956 -31.38168 -28.71616 -28.12086 -27.68751 -24.41035 -23.83700 -22.95687 -22.30568 -21.68188 -19.91957 -18.72275 -18.50214 -17.46986 -17.16009 -16.63751 -16.40042 -16.31573 -16.29913 -15.68382 -15.54677 -15.24418 -14.76540 -14.57520 -14.49794 -14.39990 -13.92080 -13.69684 -13.40351 -13.32390 -13.20253 -13.14154 -13.03025 -12.95232 -12.88487 -12.87680 -12.66107 -12.46508 -12.27003 -12.14154 -12.08060 -11.77086 -11.54434 -11.36695 -11.32126 -11.09974 -10.54042 -10.04186 -10.03774 -9.44347 -8.19186 -6.30067 -0.82281 -0.16737 0.31370 1.39580 1.43719 1.51452 2.08946 2.41676 2.45618 2.98308 3.07119 3.13426 3.31114 3.63003 3.77886 3.87634 3.91538 3.97649 4.15272 4.22878 4.31205 4.37209 4.38756 4.46270 4.63100 4.68654 4.70348 4.71886 4.77480 4.80269 4.90193 5.02476 5.04059 5.10613 5.11465 5.13585 5.23945 5.25723 5.25842 5.49519 5.52812 5.76228 5.86576 5.90092 5.93921 6.27637 6.45093 6.86147 7.38568 8.92545 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.002338 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.545454 B =11971.616225 C =12642.538487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.038 4.038 3 C -0.150 4.150 4 C -0.037 4.037 5 C -0.676 4.676 6 S 2.494 3.506 7 O -0.957 6.957 8 O -0.987 6.987 9 C -0.569 4.569 10 C 0.077 3.923 11 H 0.082 0.918 12 C -0.168 4.168 13 N -0.699 5.699 14 C 0.069 3.931 15 C -0.096 4.096 16 C 0.024 3.976 17 C -0.544 4.544 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.270 1.270 25 C -0.039 4.039 26 C -0.148 4.148 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.358 0.642 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.058 0.942 42 H -0.003 1.003 43 H -0.013 1.013 44 H 0.264 0.736 45 H 0.147 0.853 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.407 -8.293 10.971 34.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.038 4.038 3 C -0.168 4.168 4 C -0.056 4.056 5 C -0.763 4.763 6 S 2.679 3.321 7 O -0.954 6.954 8 O -0.984 6.984 9 C -0.702 4.702 10 C -0.034 4.034 11 H 0.100 0.900 12 C -0.228 4.228 13 N -0.332 5.332 14 C -0.060 4.060 15 C -0.134 4.134 16 C -0.013 4.013 17 C -0.582 4.582 18 H 0.077 0.923 19 C -0.201 4.201 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.195 1.195 25 C -0.058 4.058 26 C -0.167 4.167 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.171 0.829 31 H 0.161 0.839 32 H 0.189 0.811 33 H 0.181 0.819 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.178 0.822 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.015 0.985 43 H 0.006 0.994 44 H 0.072 0.928 45 H 0.164 0.836 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -30.996 -8.451 9.535 33.513 hybrid contribution 0.825 0.549 0.635 1.177 sum -30.171 -7.903 10.170 32.805 Atomic orbital electron populations 1.21011 0.88323 1.04671 1.03803 1.20694 0.98182 0.92914 0.92048 1.21532 0.93693 0.99442 1.02166 1.21196 0.95662 0.96780 0.91934 1.30544 1.25562 1.00231 1.19999 1.05236 0.74021 0.73393 0.79459 1.93544 1.82077 1.45036 1.74777 1.93488 1.83179 1.46252 1.75497 1.30175 1.03861 1.14696 1.21443 1.21408 0.90913 0.93257 0.97818 0.89967 1.22377 1.01985 1.04535 0.93879 1.60632 1.20293 1.07141 1.45105 1.21889 0.87522 0.97989 0.98627 1.21396 0.95930 0.96216 0.99822 1.18981 0.92193 0.95524 0.94642 1.21671 0.98075 0.97520 1.40931 0.92314 1.26020 0.97325 1.00521 0.96214 1.70092 1.08173 1.31154 1.47921 0.85474 0.77155 0.79238 0.79016 1.18896 1.20664 1.19459 1.21212 0.95705 0.96679 0.92210 1.21537 0.93677 0.99392 1.02085 0.89638 0.89622 0.89811 0.82906 0.83863 0.81086 0.81887 0.92677 0.89547 0.90356 0.82213 0.94077 0.92706 0.93499 0.92345 0.98510 0.99415 0.92767 0.83574 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 71.24 0.71 -0.03 16 2 C -0.04 -0.49 5.88 -19.86 -0.12 -0.61 16 3 C -0.15 -2.22 9.70 22.27 0.22 -2.00 16 4 C -0.04 -0.71 9.47 22.27 0.21 -0.50 16 5 C -0.68 -14.24 5.66 22.27 0.13 -14.11 16 6 S 2.49 63.69 5.00 -56.49 -0.28 63.40 16 7 O -0.96 -32.77 16.54 -127.65 -2.11 -34.88 16 8 O -0.99 -31.69 17.12 -127.65 -2.19 -33.87 16 9 C -0.57 -8.93 5.64 71.98 0.41 -8.52 16 10 C 0.08 1.65 2.58 44.92 0.12 1.77 16 11 H 0.08 1.94 7.80 -2.39 -0.02 1.92 16 12 C -0.17 -2.65 9.16 71.98 0.66 -1.99 16 13 N -0.70 -19.79 5.44 -491.55 -2.68 -22.47 16 14 C 0.07 2.46 5.48 86.30 0.47 2.94 16 15 C -0.10 -4.23 5.41 30.59 0.17 -4.07 16 16 C 0.02 1.35 4.97 29.85 0.15 1.50 16 17 C -0.54 -32.58 9.11 25.60 0.23 -32.34 16 18 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 19 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 20 N -0.93 -58.70 13.29 21.45 0.28 -58.42 16 21 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 C -0.04 -0.71 9.47 22.27 0.21 -0.50 16 26 C -0.15 -2.06 9.70 22.27 0.22 -1.84 16 27 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 28 H 0.08 0.31 8.09 -2.39 -0.02 0.29 16 29 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 30 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.14 2.65 7.57 -2.91 -0.02 2.63 16 32 H 0.17 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.02 7.45 -2.39 -0.02 1.01 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.00 8.13 -2.38 -0.02 0.98 16 37 H 0.36 8.66 8.47 -89.70 -0.76 7.90 16 38 H 0.04 1.38 7.44 -2.39 -0.02 1.36 16 39 H 0.05 2.11 8.06 -2.39 -0.02 2.09 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 45 H 0.15 2.34 7.57 -2.91 -0.02 2.32 16 46 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -83.33 391.92 -0.51 -83.84 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.19 Total: 14.42 kcal Atomic # 6 Polarization: -64.29 SS G_CDS: 4.24 Total: -60.05 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -2.39 Total: -80.89 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -4.30 Total: -68.76 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 63.69 SS G_CDS: -0.28 Total: 63.40 kcal Total: -83.33 -0.51 -83.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185339479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.355 kcal (2) G-P(sol) polarization free energy of solvation -83.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds