Wall clock time and date at job start Tue Mar 31 2020 14:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47190 * 2 1 4 4 C 1.38256 * 120.00054 * 264.99720 * 3 2 1 5 5 C 1.38209 * 120.00296 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00106 * 0.25480 * 5 4 3 7 7 S 1.76198 * 120.00319 * 179.72274 * 6 5 4 8 8 O 1.42100 * 106.40363 * 203.54544 * 7 6 5 9 9 O 1.42102 * 106.40267 * 336.46256 * 7 6 5 10 10 N 1.65603 * 107.21814 * 90.00167 * 7 6 5 11 11 C 1.46497 * 119.99722 * 65.23966 * 10 7 6 12 12 H 1.08999 * 109.47442 * 336.24534 * 11 10 7 13 13 C 1.50709 * 109.46671 * 216.24857 * 11 10 7 14 14 H 1.08000 * 120.00023 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99862 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99677 * 179.97438 * 15 13 11 17 17 Si 1.86798 * 119.99927 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47266 * 90.00163 * 17 15 13 19 19 H 1.48505 * 109.47026 * 209.99775 * 17 15 13 20 20 H 1.48499 * 109.47271 * 329.99472 * 17 15 13 21 21 C 1.53001 * 109.47208 * 96.25240 * 11 10 7 22 22 C 1.52997 * 109.47358 * 58.25241 * 21 11 10 23 23 C 1.38221 * 119.99885 * 359.48942 * 6 5 4 24 24 C 1.38209 * 120.00408 * 85.01794 * 3 2 1 25 25 C 1.50704 * 119.99808 * 0.02562 * 24 3 2 26 26 C 1.53000 * 109.47339 * 84.99971 * 25 24 3 27 27 H 1.08997 * 109.46757 * 60.00191 * 1 2 3 28 28 H 1.08996 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47282 * 300.00019 * 1 2 3 30 30 H 1.08999 * 109.47282 * 239.99981 * 2 1 3 31 31 H 1.09004 * 109.47105 * 119.99997 * 2 1 3 32 32 H 1.08002 * 120.00131 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.00295 * 179.97438 * 5 4 3 34 34 H 0.96997 * 119.99563 * 245.23505 * 10 7 6 35 35 H 0.97001 * 119.99291 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46618 * 178.25389 * 21 11 10 37 37 H 1.08994 * 109.46683 * 298.25029 * 21 11 10 38 38 H 1.08996 * 109.47035 * 175.69107 * 22 21 11 39 39 H 1.09005 * 109.47129 * 295.69086 * 22 21 11 40 40 H 1.09000 * 109.47530 * 55.69175 * 22 21 11 41 41 H 1.08000 * 120.00188 * 180.22653 * 23 6 5 42 42 H 1.09009 * 109.47133 * 204.99776 * 25 24 3 43 43 H 1.08998 * 109.47146 * 324.99674 * 25 24 3 44 44 H 1.08993 * 109.47380 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47008 * 300.00270 * 26 25 24 46 46 H 1.08998 * 109.47245 * 59.99763 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0377 -1.1928 5 6 2.8225 3.3406 -1.1928 6 6 2.9600 4.0252 0.0004 7 16 3.5549 5.6838 0.0011 8 8 4.1010 5.9137 1.2927 9 8 4.3011 5.8429 -1.1977 10 7 2.2369 6.6774 -0.1330 11 6 1.2428 6.7246 0.9420 12 1 1.2805 5.7968 1.5128 13 6 -0.1319 6.8934 0.3478 14 1 -0.2528 6.9594 -0.7233 15 6 -1.2351 6.9637 1.1718 16 7 -2.4347 7.1115 0.6533 17 14 -1.0258 6.8504 3.0246 18 1 -0.8301 8.2116 3.5848 19 1 -2.2393 6.2385 3.6233 20 1 0.1581 6.0108 3.3386 21 6 1.5472 7.9050 1.8666 22 6 1.5372 9.2031 1.0568 23 6 2.6262 3.4103 1.1925 24 6 2.1647 2.1070 1.1924 25 6 1.8073 1.4342 2.4926 26 6 3.0050 0.6254 2.9946 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2577 1.5016 -2.1246 33 1 3.0798 3.8224 -2.1245 34 1 2.1232 7.2281 -0.9234 35 1 -3.2109 7.1606 1.2330 36 1 0.7898 7.9587 2.6486 37 1 2.5287 7.7674 2.3203 38 1 1.6780 10.0507 1.7274 39 1 2.3445 9.1809 0.3247 40 1 0.5819 9.3024 0.5414 41 1 2.7301 3.9464 2.1243 42 1 1.5437 2.1902 3.2325 43 1 0.9590 0.7680 2.3358 44 1 2.7464 0.1384 3.9347 45 1 3.2687 -0.1305 2.2548 46 1 3.8534 1.2916 3.1514 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186436630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:53 Heat of formation + Delta-G solvation = -71.106140 kcal Electronic energy + Delta-G solvation = -26932.237914 eV Core-core repulsion = 23334.075568 eV Total energy + Delta-G solvation = -3598.162346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77607 -36.91500 -36.25166 -35.41490 -34.81669 -33.52092 -32.25328 -30.81127 -29.96191 -29.16906 -26.89449 -24.63502 -23.69307 -23.34177 -21.66550 -20.94274 -20.48120 -18.69486 -17.52809 -17.09550 -16.32689 -16.15804 -15.62829 -15.54346 -14.71957 -14.50207 -13.98066 -13.83514 -13.74334 -13.65404 -13.39210 -13.28374 -13.17593 -12.85124 -12.54460 -12.45044 -12.10758 -12.02966 -11.80015 -11.67173 -11.57095 -11.41083 -11.34710 -11.25556 -11.12087 -10.93325 -10.69320 -10.67080 -10.66265 -10.31130 -10.06633 -9.49112 -9.33253 -8.97554 -8.77357 -8.66784 -8.45377 -6.21626 -4.22260 0.81802 1.08271 1.43534 3.19083 3.28690 3.30259 3.41367 3.72139 4.21994 4.27695 4.56628 4.62524 4.81926 4.84495 4.99836 5.10491 5.16376 5.20618 5.25456 5.31764 5.42314 5.51505 5.59439 5.66459 5.72990 5.80286 5.87140 5.90166 5.94730 6.01131 6.07625 6.11904 6.20147 6.23119 6.27199 6.31988 6.35026 6.58893 6.69508 6.80220 6.94718 6.98660 7.11590 7.23915 7.41906 7.84687 8.36778 8.81024 9.38313 10.90658 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.005671 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.143505 B = 4936.114645 C = 6053.341911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.030 4.030 4 C -0.139 4.139 5 C -0.018 4.018 6 C -0.667 4.667 7 S 2.689 3.311 8 O -0.965 6.965 9 O -0.978 6.978 10 N -1.090 6.090 11 C 0.251 3.749 12 H 0.038 0.962 13 C -0.519 4.519 14 H 0.084 0.916 15 C 0.078 3.922 16 N -0.891 5.891 17 Si 0.875 3.125 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.264 1.264 21 C -0.147 4.147 22 C -0.135 4.135 23 C -0.011 4.011 24 C -0.103 4.103 25 C -0.090 4.090 26 C -0.148 4.148 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.415 0.585 35 H 0.266 0.734 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.032 0.968 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.881 -12.408 0.556 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.030 4.030 4 C -0.158 4.158 5 C -0.037 4.037 6 C -0.753 4.753 7 S 2.778 3.222 8 O -0.955 6.955 9 O -0.968 6.968 10 N -0.850 5.850 11 C 0.145 3.855 12 H 0.056 0.944 13 C -0.559 4.559 14 H 0.102 0.898 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.705 3.295 18 H -0.200 1.200 19 H -0.222 1.222 20 H -0.189 1.189 21 C -0.186 4.186 22 C -0.192 4.192 23 C -0.030 4.030 24 C -0.104 4.104 25 C -0.128 4.128 26 C -0.205 4.205 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.250 0.750 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.155 0.845 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.572 -12.261 0.822 14.983 hybrid contribution -0.765 -0.260 0.614 1.015 sum 7.807 -12.521 1.436 14.825 Atomic orbital electron populations 1.21767 0.94136 1.01769 1.02990 1.20704 0.96712 0.92459 1.03107 1.19987 0.94501 0.95753 0.92774 1.21070 1.01714 0.95432 0.97612 1.20822 0.92300 0.94116 0.96447 1.31008 1.18994 1.25890 0.99399 1.01836 0.73336 0.73541 0.73468 1.93555 1.76449 1.84468 1.41055 1.93531 1.69437 1.86147 1.47664 1.55263 1.42487 1.56565 1.30729 1.18919 0.88294 0.94042 0.84219 0.94415 1.21031 0.87836 1.51271 0.95716 0.89845 1.24847 0.95076 0.94257 0.98344 1.69868 0.98255 1.49146 1.35554 0.87045 0.77295 0.78758 0.86431 1.19989 1.22183 1.18868 1.22292 0.99796 0.97889 0.98596 1.21574 1.02719 0.95617 0.99332 1.20809 0.91457 0.94007 0.96719 1.19784 1.01208 0.94384 0.94975 1.20624 0.98729 0.99599 0.93808 1.21780 0.98065 0.99957 1.00707 0.92137 0.92277 0.92058 0.90884 0.90359 0.85427 0.84497 0.75030 0.92392 0.92873 0.92931 0.94855 0.93791 0.90773 0.84530 0.90593 0.90415 0.92305 0.92599 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.72 37.16 0.36 -1.12 16 2 C -0.09 -0.92 5.38 -27.88 -0.15 -1.07 16 3 C -0.03 -0.39 5.13 -104.63 -0.54 -0.93 16 4 C -0.14 -1.89 9.68 -39.59 -0.38 -2.27 16 5 C -0.02 -0.27 9.52 -39.59 -0.38 -0.65 16 6 C -0.67 -11.45 5.84 -39.58 -0.23 -11.68 16 7 S 2.69 49.33 5.64 -107.50 -0.61 48.73 16 8 O -0.97 -19.51 16.70 -57.17 -0.95 -20.46 16 9 O -0.98 -18.81 17.28 -57.17 -0.99 -19.79 16 10 N -1.09 -20.92 4.74 -5.88 -0.03 -20.95 16 11 C 0.25 5.56 2.06 -69.08 -0.14 5.42 16 12 H 0.04 0.85 6.30 -51.93 -0.33 0.52 16 13 C -0.52 -13.28 8.10 -34.44 -0.28 -13.56 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 15 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 16 N -0.89 -25.54 13.96 55.43 0.77 -24.77 16 17 Si 0.87 20.68 24.39 -169.99 -4.15 16.54 16 18 H -0.27 -6.33 6.85 56.52 0.39 -5.94 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.26 -5.92 6.53 56.52 0.37 -5.55 16 21 C -0.15 -3.14 5.39 -26.73 -0.14 -3.28 16 22 C -0.14 -2.64 9.51 37.16 0.35 -2.29 16 23 C -0.01 -0.18 8.54 -39.58 -0.34 -0.52 16 24 C -0.10 -1.48 5.13 -104.62 -0.54 -2.02 16 25 C -0.09 -1.06 5.38 -27.88 -0.15 -1.21 16 26 C -0.15 -1.46 9.72 37.16 0.36 -1.10 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.66 6.80 -51.93 -0.35 0.31 16 30 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 31 H 0.08 0.69 5.62 -51.93 -0.29 0.40 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.14 1.91 7.62 -52.48 -0.40 1.51 16 34 H 0.41 7.32 8.68 -34.47 -0.30 7.02 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.05 1.18 3.24 -51.93 -0.17 1.02 16 37 H 0.05 1.07 7.80 -51.93 -0.41 0.67 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.78 7.59 -51.93 -0.39 0.38 16 40 H 0.07 1.57 7.13 -51.93 -0.37 1.20 16 41 H 0.14 2.24 7.62 -52.49 -0.40 1.84 16 42 H 0.08 0.92 8.05 -51.92 -0.42 0.50 16 43 H 0.08 0.82 5.63 -51.93 -0.29 0.52 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.51 6.80 -51.93 -0.35 0.15 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -31.18 369.84 -9.70 -40.88 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.03 Total: 8.52 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: -2.29 Total: -34.26 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.75 Total: -45.72 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.94 Total: -40.25 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.15 Total: 16.54 kcal Atomic # 16 Polarization: 49.33 SS G_CDS: -0.61 Total: 48.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.18 -9.70 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.227 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds