Wall clock time and date at job start Tue Mar 31 2020 14:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47029 * 2 1 4 4 C 1.38256 * 119.99825 * 265.02232 * 3 2 1 5 5 C 1.38211 * 120.00344 * 179.79107 * 4 3 2 6 6 C 1.38262 * 119.99672 * 0.41563 * 5 4 3 7 7 S 1.76195 * 120.00042 * 179.81406 * 6 5 4 8 8 O 1.42104 * 106.40340 * 160.36295 * 7 6 5 9 9 O 1.42103 * 106.40563 * 27.44130 * 7 6 5 10 10 N 1.65601 * 107.21829 * 273.90091 * 7 6 5 11 11 C 1.46506 * 119.99842 * 65.14162 * 10 7 6 12 12 H 1.08996 * 109.47082 * 335.49263 * 11 10 7 13 13 C 1.50702 * 109.47202 * 95.49174 * 11 10 7 14 14 H 1.08003 * 119.99804 * 0.02562 * 13 11 10 15 15 C 1.37873 * 120.00161 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00041 * 180.02562 * 15 13 11 17 17 Si 1.86804 * 119.99819 * 0.02562 * 15 13 11 18 18 H 1.48507 * 109.46962 * 269.99732 * 17 15 13 19 19 H 1.48497 * 109.47324 * 29.99792 * 17 15 13 20 20 H 1.48500 * 109.47027 * 149.99866 * 17 15 13 21 21 C 1.53001 * 109.47225 * 215.49573 * 11 10 7 22 22 C 1.53000 * 109.47106 * 65.09305 * 21 11 10 23 23 C 1.38209 * 119.99809 * 359.53579 * 6 5 4 24 24 C 1.38212 * 120.00149 * 84.99599 * 3 2 1 25 25 C 1.50697 * 120.00115 * 0.02562 * 24 3 2 26 26 C 1.53001 * 109.46983 * 85.02407 * 25 24 3 27 27 H 1.08996 * 109.47099 * 300.00212 * 1 2 3 28 28 H 1.08995 * 109.47203 * 60.00571 * 1 2 3 29 29 H 1.09004 * 109.46649 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47347 * 239.99305 * 2 1 3 31 31 H 1.09005 * 109.47238 * 119.99521 * 2 1 3 32 32 H 1.08004 * 119.99889 * 359.97438 * 4 3 2 33 33 H 1.07992 * 120.00529 * 180.23119 * 5 4 3 34 34 H 0.96997 * 120.00239 * 245.14327 * 10 7 6 35 35 H 0.97001 * 119.99981 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.46909 * 185.09583 * 21 11 10 37 37 H 1.09000 * 109.46655 * 305.09060 * 21 11 10 38 38 H 1.09003 * 109.47009 * 304.74731 * 22 21 11 39 39 H 1.08994 * 109.46965 * 64.75118 * 22 21 11 40 40 H 1.08999 * 109.46434 * 184.75034 * 22 21 11 41 41 H 1.08000 * 119.99952 * 180.25380 * 23 6 5 42 42 H 1.09006 * 109.46990 * 205.01928 * 25 24 3 43 43 H 1.08995 * 109.47104 * 325.01767 * 25 24 3 44 44 H 1.09002 * 109.47538 * 60.00085 * 26 25 24 45 45 H 1.08998 * 109.46925 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.46981 * 299.99799 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8173 3.3424 -1.1933 6 6 2.9538 4.0274 -0.0001 7 16 3.5406 5.6888 -0.0003 8 8 3.1433 6.2548 1.2412 9 8 3.1785 6.2422 -1.2580 10 7 5.1951 5.6244 0.0234 11 6 5.9225 5.0571 -1.1148 12 1 5.2744 4.3638 -1.6510 13 6 6.3482 6.1661 -2.0422 14 1 6.1020 7.1911 -1.8069 15 6 7.0528 5.8725 -3.1903 16 7 7.4247 6.8403 -3.9992 17 14 7.4792 4.0997 -3.5967 18 1 8.7949 3.7576 -2.9989 19 1 6.4352 3.2001 -3.0436 20 1 7.5467 3.9323 -5.0707 21 6 7.1594 4.3118 -0.6095 22 6 6.7228 3.1090 0.2294 23 6 2.6246 3.4109 1.1922 24 6 2.1643 2.1072 1.1924 25 6 1.8063 1.4346 2.4926 26 6 3.0042 0.6263 2.9953 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.2576 1.5015 -2.1246 33 1 3.0702 3.8257 -2.1254 34 1 5.6828 5.9622 0.7908 35 1 7.9202 6.6337 -4.8071 36 1 7.7485 3.9674 -1.4594 37 1 7.7625 4.9822 0.0028 38 1 6.0644 3.4447 1.0306 39 1 6.1917 2.3982 -0.4036 40 1 7.6013 2.6275 0.6587 41 1 2.7274 3.9474 2.1239 42 1 1.5421 2.1906 3.2320 43 1 0.9584 0.7681 2.3354 44 1 3.8522 1.2929 3.1524 45 1 2.7452 0.1395 3.9354 46 1 3.2685 -0.1296 2.2558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186436642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:56 Heat of formation + Delta-G solvation = -68.593396 kcal Electronic energy + Delta-G solvation = -26963.546621 eV Core-core repulsion = 23365.493236 eV Total energy + Delta-G solvation = -3598.053385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.87522 -36.75846 -36.23512 -35.24690 -34.88903 -33.64279 -32.19572 -31.08833 -30.05023 -29.25984 -27.22550 -24.73936 -23.78926 -22.75265 -21.77199 -20.99233 -20.65124 -18.87291 -17.32856 -17.18509 -16.45013 -16.34057 -15.68578 -15.39789 -14.82173 -14.53260 -14.13088 -14.06023 -13.78399 -13.72259 -13.56043 -13.41746 -12.95198 -12.78127 -12.57618 -12.27546 -12.13644 -12.11708 -11.89832 -11.67406 -11.54023 -11.53328 -11.42830 -11.39314 -11.18485 -11.04341 -10.88010 -10.77733 -10.64923 -10.29424 -10.10432 -9.76286 -9.45221 -9.05728 -8.75765 -8.61459 -8.36531 -6.11291 -4.11348 0.79550 1.09430 1.34013 3.18833 3.27335 3.32537 3.38011 3.79444 4.29718 4.31899 4.46354 4.57084 4.71925 4.74736 4.96948 5.05726 5.08229 5.13934 5.17273 5.23260 5.34286 5.39732 5.51761 5.55834 5.60559 5.67042 5.69936 5.76056 5.76842 5.89009 5.90547 5.92117 6.03296 6.09399 6.17153 6.23151 6.27703 6.41043 6.44669 6.49151 6.59398 6.84204 6.90540 7.18534 7.54630 7.79831 8.47262 8.97700 9.47502 11.02147 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.004772 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.307802 B = 5866.224511 C = 6393.114009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.032 4.032 4 C -0.139 4.139 5 C -0.016 4.016 6 C -0.670 4.670 7 S 2.689 3.311 8 O -0.981 6.981 9 O -0.941 6.941 10 N -1.094 6.094 11 C 0.254 3.746 12 H 0.038 0.962 13 C -0.524 4.524 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.891 5.891 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.264 1.264 20 H -0.293 1.293 21 C -0.137 4.137 22 C -0.154 4.154 23 C -0.017 4.017 24 C -0.107 4.107 25 C -0.087 4.087 26 C -0.149 4.149 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.143 0.857 34 H 0.409 0.591 35 H 0.265 0.735 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.137 0.863 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 -15.697 11.408 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.032 4.032 4 C -0.157 4.157 5 C -0.035 4.035 6 C -0.755 4.755 7 S 2.777 3.223 8 O -0.972 6.972 9 O -0.931 6.931 10 N -0.854 5.854 11 C 0.148 3.852 12 H 0.056 0.944 13 C -0.563 4.563 14 H 0.102 0.898 15 C -0.128 4.128 16 N -0.529 5.529 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.189 1.189 20 H -0.220 1.220 21 C -0.176 4.176 22 C -0.211 4.211 23 C -0.036 4.036 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.243 0.757 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.465 -14.990 11.050 21.361 hybrid contribution 0.745 -1.525 -0.172 1.706 sum -9.720 -16.515 10.878 22.035 Atomic orbital electron populations 1.21756 0.94384 1.01822 1.02513 1.20707 0.96470 0.92623 1.03342 1.19979 0.94829 0.95645 0.92785 1.21141 1.01539 0.95336 0.97731 1.21037 0.91588 0.93812 0.97061 1.31248 1.17569 1.27510 0.99205 1.01983 0.73056 0.73693 0.73589 1.93518 1.82114 1.76313 1.45215 1.93632 1.82213 1.74471 1.42765 1.55257 1.23869 1.77478 1.28770 1.18909 0.89841 0.93395 0.83039 0.94418 1.21355 1.35422 0.94717 1.04803 0.89750 1.24909 0.95342 0.96710 0.95879 1.69874 1.38333 1.31714 1.12951 0.87055 0.79318 0.86160 0.76953 1.20274 1.18929 1.22035 1.22222 0.99778 0.96323 0.99298 1.21858 1.00476 0.98656 1.00121 1.20760 0.92554 0.93678 0.96604 1.19776 1.01865 0.94362 0.94821 1.20589 0.98732 0.99395 0.93673 1.21784 0.98051 1.00084 1.00708 0.92309 0.92322 0.92224 0.90750 0.90301 0.85369 0.83975 0.75681 0.92468 0.92207 0.91288 0.92853 0.93570 0.93724 0.84524 0.90827 0.90653 0.92251 0.92369 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.72 37.16 0.36 -0.77 16 2 C -0.09 -0.82 5.38 -27.88 -0.15 -0.97 16 3 C -0.03 -0.38 5.13 -104.63 -0.54 -0.92 16 4 C -0.14 -1.85 9.68 -39.58 -0.38 -2.23 16 5 C -0.02 -0.25 8.72 -39.58 -0.34 -0.60 16 6 C -0.67 -11.01 5.85 -39.58 -0.23 -11.24 16 7 S 2.69 51.44 5.65 -107.50 -0.61 50.84 16 8 O -0.98 -19.27 17.19 -57.17 -0.98 -20.25 16 9 O -0.94 -21.74 17.14 -57.17 -0.98 -22.72 16 10 N -1.09 -20.90 4.83 -5.88 -0.03 -20.93 16 11 C 0.25 5.59 1.74 -69.08 -0.12 5.47 16 12 H 0.04 0.84 5.92 -51.93 -0.31 0.53 16 13 C -0.52 -14.30 9.42 -34.44 -0.32 -14.62 16 14 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 15 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 16 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 17 Si 0.88 20.77 24.41 -169.99 -4.15 16.62 16 18 H -0.28 -6.30 6.83 56.52 0.39 -5.91 16 19 H -0.26 -5.84 6.53 56.52 0.37 -5.47 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C -0.14 -2.70 5.03 -26.73 -0.13 -2.83 16 22 C -0.15 -2.47 9.86 37.16 0.37 -2.11 16 23 C -0.02 -0.24 9.16 -39.58 -0.36 -0.60 16 24 C -0.11 -1.30 5.13 -104.62 -0.54 -1.84 16 25 C -0.09 -0.79 5.38 -27.88 -0.15 -0.94 16 26 C -0.15 -1.24 9.72 37.16 0.36 -0.88 16 27 H 0.06 0.45 6.80 -51.93 -0.35 0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 31 H 0.08 0.61 5.63 -51.93 -0.29 0.32 16 32 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.14 2.37 7.53 -52.49 -0.40 1.98 16 34 H 0.41 6.78 8.84 -34.47 -0.30 6.47 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.06 1.27 3.21 -51.93 -0.17 1.10 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 0.78 7.63 -51.93 -0.40 0.38 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.14 1.78 7.53 -52.49 -0.40 1.39 16 42 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.07 0.59 5.62 -51.93 -0.29 0.30 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.47 6.80 -51.93 -0.35 0.11 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -33.44 372.06 -9.73 -43.17 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.08 Total: 6.79 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -2.28 Total: -33.08 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.75 Total: -46.98 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.96 Total: -42.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.15 Total: 16.62 kcal Atomic # 16 Polarization: 51.44 SS G_CDS: -0.61 Total: 50.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.44 -9.73 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.424 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds