Wall clock time and date at job start Tue Mar 31 2020 14:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47029 * 2 1 4 4 C 1.38256 * 119.99825 * 265.02232 * 3 2 1 5 5 C 1.38211 * 120.00344 * 179.79107 * 4 3 2 6 6 C 1.38262 * 119.99672 * 0.41563 * 5 4 3 7 7 S 1.76195 * 120.00042 * 179.81406 * 6 5 4 8 8 O 1.42104 * 106.40340 * 160.36295 * 7 6 5 9 9 O 1.42103 * 106.40563 * 27.44130 * 7 6 5 10 10 N 1.65601 * 107.21829 * 273.90091 * 7 6 5 11 11 C 1.46506 * 119.99842 * 65.14162 * 10 7 6 12 12 H 1.08996 * 109.47082 * 335.49263 * 11 10 7 13 13 C 1.50702 * 109.47202 * 95.49174 * 11 10 7 14 14 H 1.08003 * 119.99804 * 0.02562 * 13 11 10 15 15 C 1.37873 * 120.00161 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00041 * 180.02562 * 15 13 11 17 17 Si 1.86804 * 119.99819 * 0.02562 * 15 13 11 18 18 H 1.48507 * 109.46962 * 269.99732 * 17 15 13 19 19 H 1.48497 * 109.47324 * 29.99792 * 17 15 13 20 20 H 1.48500 * 109.47027 * 149.99866 * 17 15 13 21 21 C 1.53001 * 109.47225 * 215.49573 * 11 10 7 22 22 C 1.53000 * 109.47106 * 65.09305 * 21 11 10 23 23 C 1.38209 * 119.99809 * 359.53579 * 6 5 4 24 24 C 1.38212 * 120.00149 * 84.99599 * 3 2 1 25 25 C 1.50697 * 120.00115 * 0.02562 * 24 3 2 26 26 C 1.53001 * 109.46983 * 85.02407 * 25 24 3 27 27 H 1.08996 * 109.47099 * 300.00212 * 1 2 3 28 28 H 1.08995 * 109.47203 * 60.00571 * 1 2 3 29 29 H 1.09004 * 109.46649 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47347 * 239.99305 * 2 1 3 31 31 H 1.09005 * 109.47238 * 119.99521 * 2 1 3 32 32 H 1.08004 * 119.99889 * 359.97438 * 4 3 2 33 33 H 1.07992 * 120.00529 * 180.23119 * 5 4 3 34 34 H 0.96997 * 120.00239 * 245.14327 * 10 7 6 35 35 H 0.97001 * 119.99981 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.46909 * 185.09583 * 21 11 10 37 37 H 1.09000 * 109.46655 * 305.09060 * 21 11 10 38 38 H 1.09003 * 109.47009 * 304.74731 * 22 21 11 39 39 H 1.08994 * 109.46965 * 64.75118 * 22 21 11 40 40 H 1.08999 * 109.46434 * 184.75034 * 22 21 11 41 41 H 1.08000 * 119.99952 * 180.25380 * 23 6 5 42 42 H 1.09006 * 109.46990 * 205.01928 * 25 24 3 43 43 H 1.08995 * 109.47104 * 325.01767 * 25 24 3 44 44 H 1.09002 * 109.47538 * 60.00085 * 26 25 24 45 45 H 1.08998 * 109.46925 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.46981 * 299.99799 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8173 3.3424 -1.1933 6 6 2.9538 4.0274 -0.0001 7 16 3.5406 5.6888 -0.0003 8 8 3.1433 6.2548 1.2412 9 8 3.1785 6.2422 -1.2580 10 7 5.1951 5.6244 0.0234 11 6 5.9225 5.0571 -1.1148 12 1 5.2744 4.3638 -1.6510 13 6 6.3482 6.1661 -2.0422 14 1 6.1020 7.1911 -1.8069 15 6 7.0528 5.8725 -3.1903 16 7 7.4247 6.8403 -3.9992 17 14 7.4792 4.0997 -3.5967 18 1 8.7949 3.7576 -2.9989 19 1 6.4352 3.2001 -3.0436 20 1 7.5467 3.9323 -5.0707 21 6 7.1594 4.3118 -0.6095 22 6 6.7228 3.1090 0.2294 23 6 2.6246 3.4109 1.1922 24 6 2.1643 2.1072 1.1924 25 6 1.8063 1.4346 2.4926 26 6 3.0042 0.6263 2.9953 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.2576 1.5015 -2.1246 33 1 3.0702 3.8257 -2.1254 34 1 5.6828 5.9622 0.7908 35 1 7.9202 6.6337 -4.8071 36 1 7.7485 3.9674 -1.4594 37 1 7.7625 4.9822 0.0028 38 1 6.0644 3.4447 1.0306 39 1 6.1917 2.3982 -0.4036 40 1 7.6013 2.6275 0.6587 41 1 2.7274 3.9474 2.1239 42 1 1.5421 2.1906 3.2320 43 1 0.9584 0.7681 2.3354 44 1 3.8522 1.2929 3.1524 45 1 2.7452 0.1395 3.9354 46 1 3.2685 -0.1296 2.2558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186436642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:55 Heat of formation + Delta-G solvation = -91.879928 kcal Electronic energy + Delta-G solvation = -26964.556401 eV Core-core repulsion = 23365.493236 eV Total energy + Delta-G solvation = -3599.063165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86438 -38.40585 -37.90696 -36.89171 -35.81012 -34.41904 -34.29525 -32.58373 -30.97674 -30.14922 -29.09161 -25.54905 -24.70582 -24.50670 -22.61075 -22.32835 -21.99229 -20.35446 -19.08743 -18.68496 -18.08406 -17.48900 -17.08418 -16.57848 -16.46466 -15.61617 -15.49218 -15.23983 -14.92594 -14.73117 -14.58772 -14.52660 -14.21979 -14.02572 -13.83845 -13.73154 -13.30831 -13.27250 -13.16963 -13.09537 -13.01388 -12.75538 -12.73274 -12.54563 -12.34932 -12.26058 -12.12910 -12.06527 -11.72708 -11.68011 -11.50711 -11.37019 -11.27683 -10.70253 -10.17233 -10.05390 -9.78442 -8.28150 -6.33581 -0.56180 -0.18970 0.28109 1.29805 1.35997 1.45851 2.09843 2.31141 2.47825 2.82082 3.04322 3.37941 3.70136 3.75128 3.84182 4.09676 4.17563 4.22821 4.25957 4.32438 4.42561 4.44941 4.49297 4.53101 4.54704 4.61394 4.73588 4.77675 4.92547 4.93918 5.03176 5.04257 5.05660 5.09005 5.13189 5.15446 5.18619 5.32486 5.35453 5.38271 5.48536 5.53160 5.55937 5.58461 5.89310 6.21829 6.40373 6.71984 7.29911 8.89680 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.004772 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.307802 B = 5866.224511 C = 6393.114009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.023 4.023 4 C -0.139 4.139 5 C -0.041 4.041 6 C -0.674 4.674 7 S 2.695 3.305 8 O -0.992 6.992 9 O -0.994 6.994 10 N -1.093 6.093 11 C 0.258 3.742 12 H 0.041 0.959 13 C -0.532 4.532 14 H 0.033 0.967 15 C 0.013 3.987 16 N -0.947 5.947 17 Si 0.938 3.062 18 H -0.255 1.255 19 H -0.236 1.236 20 H -0.298 1.298 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.026 4.026 24 C -0.102 4.102 25 C -0.087 4.087 26 C -0.148 4.148 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.419 0.581 35 H 0.266 0.734 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -20.648 13.527 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.024 4.024 4 C -0.158 4.158 5 C -0.061 4.061 6 C -0.765 4.765 7 S 2.789 3.211 8 O -0.982 6.982 9 O -0.984 6.984 10 N -0.853 5.853 11 C 0.152 3.848 12 H 0.059 0.941 13 C -0.572 4.572 14 H 0.051 0.949 15 C -0.185 4.185 16 N -0.587 5.587 17 Si 0.763 3.237 18 H -0.180 1.180 19 H -0.160 1.160 20 H -0.226 1.226 21 C -0.175 4.175 22 C -0.205 4.205 23 C -0.045 4.045 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.168 0.832 33 H 0.141 0.859 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.163 0.837 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.183 -19.887 13.214 26.366 hybrid contribution 0.841 0.045 -0.759 1.133 sum -10.343 -19.842 12.456 25.609 Atomic orbital electron populations 1.21765 0.93476 1.03049 1.02149 1.20819 0.97058 0.90301 1.04815 1.20422 0.92835 0.97184 0.91912 1.21411 1.00692 0.94160 0.99551 1.21024 0.93594 0.95312 0.96146 1.30528 1.20036 1.25246 1.00656 1.01332 0.72742 0.74777 0.72296 1.93488 1.82112 1.77572 1.45029 1.93566 1.82907 1.76906 1.45033 1.55052 1.23956 1.77846 1.28421 1.18715 0.91240 0.91830 0.83051 0.94118 1.21685 1.34905 0.94235 1.06328 0.94863 1.25847 0.95252 1.01836 0.95580 1.70055 1.40114 1.34652 1.13872 0.86025 0.80699 0.80462 0.76476 1.18044 1.15975 1.22576 1.22112 0.97987 0.97804 0.99619 1.21810 1.01893 0.96911 0.99886 1.20966 0.92814 0.94840 0.95907 1.20162 1.00139 0.93387 0.96583 1.20702 0.99830 0.99852 0.92014 1.21789 0.97159 0.99858 1.01752 0.92266 0.93191 0.90246 0.89617 0.88593 0.83192 0.85888 0.74502 0.92448 0.93243 0.90843 0.91615 0.93296 0.91070 0.83713 0.90271 0.88731 0.93252 0.90505 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.72 71.98 0.70 -0.94 16 2 C -0.09 -1.18 5.38 29.85 0.16 -1.02 16 3 C -0.02 -0.47 5.13 -19.87 -0.10 -0.57 16 4 C -0.14 -3.39 9.68 22.27 0.22 -3.18 16 5 C -0.04 -1.31 8.72 22.27 0.19 -1.11 16 6 C -0.67 -21.93 5.85 22.27 0.13 -21.80 16 7 S 2.70 106.92 5.65 -56.49 -0.32 106.60 16 8 O -0.99 -39.81 17.19 -128.00 -2.20 -42.01 16 9 O -0.99 -49.03 17.14 -128.00 -2.19 -51.22 16 10 N -1.09 -42.77 4.83 -172.51 -0.83 -43.60 16 11 C 0.26 11.49 1.74 44.24 0.08 11.57 16 12 H 0.04 1.81 5.92 -2.39 -0.01 1.80 16 13 C -0.53 -30.51 9.42 25.60 0.24 -30.27 16 14 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 15 C 0.01 0.73 5.45 84.65 0.46 1.19 16 16 N -0.95 -59.91 13.96 21.44 0.30 -59.61 16 17 Si 0.94 42.89 24.41 68.60 1.67 44.56 16 18 H -0.25 -10.76 6.83 99.48 0.68 -10.08 16 19 H -0.24 -9.63 6.53 99.48 0.65 -8.98 16 20 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 21 C -0.14 -5.12 5.03 30.59 0.15 -4.97 16 22 C -0.15 -4.23 9.86 71.98 0.71 -3.52 16 23 C -0.03 -0.69 9.16 22.27 0.20 -0.49 16 24 C -0.10 -2.14 5.13 -19.87 -0.10 -2.24 16 25 C -0.09 -1.22 5.38 29.85 0.16 -1.06 16 26 C -0.15 -1.82 9.72 71.98 0.70 -1.12 16 27 H 0.06 0.66 6.80 -2.39 -0.02 0.64 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.09 0.95 8.05 -2.39 -0.02 0.94 16 31 H 0.10 0.95 5.63 -2.38 -0.01 0.94 16 32 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.12 4.28 7.53 -2.91 -0.02 4.26 16 34 H 0.42 14.17 8.84 -96.75 -0.86 13.31 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.05 1.97 3.21 -2.39 -0.01 1.97 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.06 1.71 7.63 -2.39 -0.02 1.70 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.15 3.54 7.53 -2.91 -0.02 3.51 16 42 H 0.08 1.06 8.05 -2.38 -0.02 1.04 16 43 H 0.09 1.00 5.62 -2.39 -0.01 0.99 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.70 6.80 -2.39 -0.02 0.68 16 Total: -1.00 -77.32 372.06 0.38 -76.95 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.05 Total: 27.86 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 3.90 Total: -59.52 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -0.53 Total: -103.21 kcal Atomic # 8 Polarization: -88.84 SS G_CDS: -4.39 Total: -93.24 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.56 kcal Atomic # 16 Polarization: 106.92 SS G_CDS: -0.32 Total: 106.60 kcal Total: -77.32 0.38 -76.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.932 kcal (2) G-P(sol) polarization free energy of solvation -77.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds