Wall clock time and date at job start Tue Mar 31 2020 14:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 C 1.50704 * 109.47328 * 119.99607 * 2 1 3 5 5 C 1.38125 * 120.03433 * 305.01506 * 4 2 1 6 6 C 1.38272 * 120.06986 * 179.70456 * 5 4 2 7 7 C 1.38302 * 120.14447 * 0.29129 * 6 5 4 8 8 C 1.38087 * 120.07276 * 359.97438 * 7 6 5 9 9 C 1.38868 * 120.03432 * 125.26400 * 4 2 1 10 10 N 1.39839 * 120.07634 * 0.02562 * 9 4 2 11 11 C 1.34776 * 120.00407 * 205.14762 * 10 9 4 12 12 O 1.21604 * 119.99817 * 5.54324 * 11 10 9 13 13 C 1.47507 * 120.00254 * 185.53931 * 11 10 9 14 14 C 1.39676 * 120.19755 * 0.02562 * 13 11 10 15 15 C 1.37824 * 119.91760 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.32338 * 359.97438 * 15 14 13 17 17 C 1.38024 * 120.40855 * 0.02562 * 16 15 14 18 18 C 1.38837 * 120.07030 * 359.74042 * 17 16 15 19 19 O 1.35520 * 120.16394 * 180.28083 * 18 17 16 20 20 C 1.34822 * 116.99554 * 354.84482 * 19 18 17 21 21 H 1.07989 * 120.00132 * 5.02269 * 20 19 18 22 22 C 1.38705 * 119.99526 * 185.01595 * 20 19 18 23 23 N 1.31524 * 119.99898 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99692 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47107 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46936 * 120.00056 * 24 22 20 27 27 H 1.48496 * 109.47221 * 239.99821 * 24 22 20 28 28 H 1.09003 * 109.46983 * 300.00410 * 1 2 3 29 29 H 1.09000 * 109.47113 * 60.00502 * 1 2 3 30 30 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47508 * 239.99607 * 2 1 3 32 32 H 1.09003 * 109.47132 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46771 * 299.99708 * 3 2 1 34 34 H 1.08996 * 109.47239 * 60.00170 * 3 2 1 35 35 H 1.07997 * 119.96731 * 359.97074 * 5 4 2 36 36 H 1.07997 * 119.92440 * 180.27402 * 6 5 4 37 37 H 1.08004 * 119.96399 * 179.97438 * 7 6 5 38 38 H 1.08003 * 120.03620 * 179.97438 * 8 7 6 39 39 H 0.97003 * 120.00172 * 25.15562 * 10 9 4 40 40 H 1.08002 * 120.04100 * 359.97438 * 14 13 11 41 41 H 1.07999 * 119.83696 * 179.97438 * 15 14 13 42 42 H 1.08007 * 119.79749 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.96559 * 180.02562 * 17 16 15 44 44 H 0.97002 * 119.99328 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6159 -0.3024 2.4827 6 6 2.0717 -0.9575 3.6119 7 6 2.9501 -2.0189 3.4921 8 6 3.3746 -2.4282 2.2434 9 6 2.9185 -1.7724 1.1069 10 7 3.3465 -2.1843 -0.1590 11 6 3.7627 -3.4518 -0.3504 12 8 3.6718 -4.2640 0.5500 13 6 4.3285 -3.8538 -1.6520 14 6 4.4352 -2.9241 -2.6889 15 6 4.9652 -3.3058 -3.9026 16 6 5.3939 -4.6087 -4.1001 17 6 5.2947 -5.5383 -3.0847 18 6 4.7680 -5.1706 -1.8539 19 8 4.6749 -6.0804 -0.8538 20 6 5.0115 -7.3519 -1.1499 21 1 5.4140 -7.5913 -2.1229 22 6 4.8408 -8.3525 -0.2046 23 7 4.3501 -8.0609 0.9804 24 14 5.3077 -10.1141 -0.6145 25 1 5.8331 -10.1768 -2.0021 26 1 6.3524 -10.5821 0.3314 27 1 4.1096 -10.9836 -0.4985 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.9303 0.5264 2.5798 36 1 1.7411 -0.6394 4.5896 37 1 3.3046 -2.5283 4.3760 38 1 4.0609 -3.2570 2.1505 39 1 3.3440 -1.5577 -0.8995 40 1 4.1029 -1.9073 -2.5398 41 1 5.0467 -2.5860 -4.7036 42 1 5.8075 -4.8987 -5.0547 43 1 5.6314 -6.5517 -3.2463 44 1 4.2311 -8.7606 1.6415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194074943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:52 Heat of formation + Delta-G solvation = -9.146367 kcal Electronic energy + Delta-G solvation = -27158.256605 eV Core-core repulsion = 23427.337086 eV Total energy + Delta-G solvation = -3730.919520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44698 -39.21378 -37.82910 -36.43418 -35.32928 -34.16786 -32.40456 -30.97872 -29.66883 -29.03129 -28.66153 -27.22142 -25.46416 -23.78294 -23.45335 -22.11656 -21.23616 -19.89537 -19.84388 -18.27011 -17.91554 -16.97052 -16.31004 -15.66623 -15.10498 -14.73680 -14.52619 -14.49800 -14.29752 -14.02619 -13.86878 -13.70677 -13.61098 -13.48079 -13.12593 -12.81276 -12.60208 -12.45815 -12.08502 -11.97168 -11.77516 -11.66366 -11.40721 -11.20719 -11.16078 -10.97191 -10.86105 -10.67686 -10.66334 -10.48464 -10.01726 -9.61023 -8.94471 -8.90560 -8.46119 -8.37873 -7.65381 -7.37230 -6.50774 -4.10503 1.43544 1.65160 1.80500 2.24732 3.08556 3.09470 3.15326 3.49988 3.55954 3.88565 4.10352 4.56332 4.66316 4.77067 4.98974 5.09385 5.12706 5.18394 5.25524 5.32582 5.41164 5.43518 5.52658 5.53992 5.64317 5.72542 5.76195 5.87072 5.89786 5.92852 6.01909 6.04478 6.16934 6.17993 6.33623 6.48400 6.55235 6.64879 6.72003 6.82321 6.84990 6.93322 6.98849 7.16763 7.23154 7.41208 7.61406 7.83573 7.93905 8.85840 8.90371 9.59218 10.62752 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003856 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.993142 B = 7259.877867 C = 8958.765705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.122 4.122 5 C -0.098 4.098 6 C -0.150 4.150 7 C -0.101 4.101 8 C -0.130 4.130 9 C 0.171 3.829 10 N -0.681 5.681 11 C 0.552 3.448 12 O -0.478 6.478 13 C -0.231 4.231 14 C -0.037 4.037 15 C -0.229 4.229 16 C -0.048 4.048 17 C -0.235 4.235 18 C 0.190 3.810 19 O -0.122 6.122 20 C -0.404 4.404 21 H 0.096 0.904 22 C 0.045 3.955 23 N -0.830 5.830 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.402 0.598 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.133 0.867 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 15.300 -2.703 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.125 4.125 5 C -0.116 4.116 6 C -0.169 4.169 7 C -0.120 4.120 8 C -0.150 4.150 9 C 0.075 3.925 10 N -0.327 5.327 11 C 0.343 3.657 12 O -0.351 6.351 13 C -0.236 4.236 14 C -0.056 4.056 15 C -0.248 4.248 16 C -0.067 4.067 17 C -0.255 4.255 18 C 0.130 3.870 19 O -0.020 6.020 20 C -0.479 4.479 21 H 0.113 0.887 22 C -0.163 4.163 23 N -0.461 5.461 24 Si 0.766 3.234 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.239 0.761 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.151 0.849 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.710 14.491 -1.610 15.045 hybrid contribution 0.249 -0.587 -0.686 0.936 sum -3.460 13.905 -2.296 14.512 Atomic orbital electron populations 1.21830 0.94258 1.02191 1.01591 1.19988 0.96206 0.95662 0.95397 1.21862 1.01201 0.95156 1.01767 1.19484 0.98874 0.98786 0.95342 1.20626 0.99882 0.99717 0.91378 1.20991 1.00170 0.97640 0.98115 1.21049 0.97392 0.96381 0.97164 1.21577 1.01405 1.01295 0.90707 1.17652 0.94606 0.94921 0.85278 1.43678 1.66108 1.13173 1.09768 1.18394 0.77952 0.80669 0.88671 1.90914 1.51613 1.49644 1.42925 1.18694 1.16104 0.93765 0.95054 1.20744 0.95745 0.96676 0.92453 1.20460 1.09899 0.96769 0.97667 1.20922 0.95356 0.92950 0.97477 1.21170 1.09105 1.01250 0.93933 1.19229 0.90899 0.89061 0.87779 1.84157 1.70106 1.16960 1.30784 1.21567 1.43841 0.80845 1.01693 0.88708 1.25404 0.96152 0.99942 0.94798 1.70133 1.37926 1.33949 1.04045 0.85648 0.78554 0.80284 0.78947 1.18925 1.19954 1.19951 0.92462 0.92565 0.92406 0.91051 0.92583 0.92513 0.92413 0.86391 0.86611 0.86108 0.83254 0.76070 0.87188 0.87120 0.87039 0.84939 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.95 37.16 0.33 -1.08 16 2 C -0.05 -0.59 2.98 -91.77 -0.27 -0.86 16 3 C -0.14 -1.28 9.05 37.16 0.34 -0.94 16 4 C -0.12 -1.68 4.80 -104.43 -0.50 -2.19 16 5 C -0.10 -1.23 8.75 -39.61 -0.35 -1.58 16 6 C -0.15 -1.98 10.04 -39.55 -0.40 -2.38 16 7 C -0.10 -1.57 10.04 -39.61 -0.40 -1.96 16 8 C -0.13 -2.40 8.71 -39.39 -0.34 -2.74 16 9 C 0.17 2.91 6.41 -83.72 -0.54 2.37 16 10 N -0.68 -11.62 4.99 -10.81 -0.05 -11.68 16 11 C 0.55 12.04 7.57 -12.48 -0.09 11.94 16 12 O -0.48 -12.69 12.33 -16.58 -0.20 -12.90 16 13 C -0.23 -4.92 5.89 -104.81 -0.62 -5.54 16 14 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 15 C -0.23 -3.63 10.02 -39.61 -0.40 -4.03 16 16 C -0.05 -0.83 10.03 -39.54 -0.40 -1.23 16 17 C -0.24 -4.93 9.16 -39.44 -0.36 -5.29 16 18 C 0.19 4.62 6.66 -38.59 -0.26 4.36 16 19 O -0.12 -3.53 7.84 -21.08 -0.17 -3.69 16 20 C -0.40 -11.21 9.49 30.90 0.29 -10.92 16 21 H 0.10 2.39 5.20 -52.49 -0.27 2.11 16 22 C 0.05 1.24 5.49 -17.51 -0.10 1.14 16 23 N -0.83 -24.60 13.67 55.48 0.76 -23.85 16 24 Si 0.94 20.23 29.55 -169.99 -5.02 15.20 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 28 H 0.06 0.52 7.13 -51.93 -0.37 0.15 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.79 5.99 -51.93 -0.31 0.48 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 35 H 0.12 1.19 7.10 -52.49 -0.37 0.82 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.15 3.25 5.79 -52.48 -0.30 2.95 16 39 H 0.40 5.50 4.96 -40.82 -0.20 5.30 16 40 H 0.11 1.42 6.42 -52.49 -0.34 1.08 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 43 H 0.13 2.74 5.63 -52.49 -0.30 2.44 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -33.11 362.31 -9.04 -42.15 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.38 Total: 11.22 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -4.43 Total: -21.91 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.70 Total: -35.52 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.37 Total: -16.59 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.11 -9.04 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194074943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.004 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds