Wall clock time and date at job start Tue Mar 31 2020 14:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 C 1.50704 * 109.47328 * 119.99607 * 2 1 3 5 5 C 1.38125 * 120.03433 * 305.01506 * 4 2 1 6 6 C 1.38272 * 120.06986 * 179.70456 * 5 4 2 7 7 C 1.38302 * 120.14447 * 0.29129 * 6 5 4 8 8 C 1.38087 * 120.07276 * 359.97438 * 7 6 5 9 9 C 1.38868 * 120.03432 * 125.26400 * 4 2 1 10 10 N 1.39839 * 120.07634 * 0.02562 * 9 4 2 11 11 C 1.34776 * 120.00407 * 205.14762 * 10 9 4 12 12 O 1.21604 * 119.99817 * 5.54324 * 11 10 9 13 13 C 1.47507 * 120.00254 * 185.53931 * 11 10 9 14 14 C 1.39676 * 120.19755 * 0.02562 * 13 11 10 15 15 C 1.37824 * 119.91760 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.32338 * 359.97438 * 15 14 13 17 17 C 1.38024 * 120.40855 * 0.02562 * 16 15 14 18 18 C 1.38837 * 120.07030 * 359.74042 * 17 16 15 19 19 O 1.35520 * 120.16394 * 180.28083 * 18 17 16 20 20 C 1.34822 * 116.99554 * 354.84482 * 19 18 17 21 21 H 1.07989 * 120.00132 * 5.02269 * 20 19 18 22 22 C 1.38705 * 119.99526 * 185.01595 * 20 19 18 23 23 N 1.31524 * 119.99898 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99692 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47107 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46936 * 120.00056 * 24 22 20 27 27 H 1.48496 * 109.47221 * 239.99821 * 24 22 20 28 28 H 1.09003 * 109.46983 * 300.00410 * 1 2 3 29 29 H 1.09000 * 109.47113 * 60.00502 * 1 2 3 30 30 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47508 * 239.99607 * 2 1 3 32 32 H 1.09003 * 109.47132 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46771 * 299.99708 * 3 2 1 34 34 H 1.08996 * 109.47239 * 60.00170 * 3 2 1 35 35 H 1.07997 * 119.96731 * 359.97074 * 5 4 2 36 36 H 1.07997 * 119.92440 * 180.27402 * 6 5 4 37 37 H 1.08004 * 119.96399 * 179.97438 * 7 6 5 38 38 H 1.08003 * 120.03620 * 179.97438 * 8 7 6 39 39 H 0.97003 * 120.00172 * 25.15562 * 10 9 4 40 40 H 1.08002 * 120.04100 * 359.97438 * 14 13 11 41 41 H 1.07999 * 119.83696 * 179.97438 * 15 14 13 42 42 H 1.08007 * 119.79749 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.96559 * 180.02562 * 17 16 15 44 44 H 0.97002 * 119.99328 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6159 -0.3024 2.4827 6 6 2.0717 -0.9575 3.6119 7 6 2.9501 -2.0189 3.4921 8 6 3.3746 -2.4282 2.2434 9 6 2.9185 -1.7724 1.1069 10 7 3.3465 -2.1843 -0.1590 11 6 3.7627 -3.4518 -0.3504 12 8 3.6718 -4.2640 0.5500 13 6 4.3285 -3.8538 -1.6520 14 6 4.4352 -2.9241 -2.6889 15 6 4.9652 -3.3058 -3.9026 16 6 5.3939 -4.6087 -4.1001 17 6 5.2947 -5.5383 -3.0847 18 6 4.7680 -5.1706 -1.8539 19 8 4.6749 -6.0804 -0.8538 20 6 5.0115 -7.3519 -1.1499 21 1 5.4140 -7.5913 -2.1229 22 6 4.8408 -8.3525 -0.2046 23 7 4.3501 -8.0609 0.9804 24 14 5.3077 -10.1141 -0.6145 25 1 5.8331 -10.1768 -2.0021 26 1 6.3524 -10.5821 0.3314 27 1 4.1096 -10.9836 -0.4985 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.9303 0.5264 2.5798 36 1 1.7411 -0.6394 4.5896 37 1 3.3046 -2.5283 4.3760 38 1 4.0609 -3.2570 2.1505 39 1 3.3440 -1.5577 -0.8995 40 1 4.1029 -1.9073 -2.5398 41 1 5.0467 -2.5860 -4.7036 42 1 5.8075 -4.8987 -5.0547 43 1 5.6314 -6.5517 -3.2463 44 1 4.2311 -8.7606 1.6415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194074943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:51 Heat of formation + Delta-G solvation = -28.810537 kcal Electronic energy + Delta-G solvation = -27159.109308 eV Core-core repulsion = 23427.337086 eV Total energy + Delta-G solvation = -3731.772222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90111 -40.74181 -39.38242 -38.09231 -36.33067 -35.66018 -34.35737 -32.48747 -30.82563 -30.61397 -29.97342 -27.93152 -27.41546 -25.25502 -24.57937 -23.59302 -22.71666 -21.38335 -20.90604 -19.93888 -19.54798 -18.44168 -17.93165 -16.93984 -16.40534 -16.36408 -16.12149 -16.04438 -15.76706 -15.40777 -15.31206 -15.09996 -14.64654 -14.61689 -14.46977 -14.34651 -14.23376 -13.58023 -13.42315 -13.06862 -12.99300 -12.89242 -12.80989 -12.61521 -12.58106 -12.36829 -12.11448 -12.01917 -11.75894 -11.57872 -11.44395 -11.32889 -10.87402 -10.57268 -9.92112 -9.66182 -9.13199 -8.90445 -8.47866 -6.18972 -0.04897 0.43800 0.50653 0.68594 1.30830 1.41366 1.50736 1.98680 2.06964 2.13376 2.80490 2.91672 3.18306 3.40167 3.68329 3.79735 3.86984 4.01129 4.19430 4.25867 4.26919 4.33920 4.38997 4.47355 4.51835 4.56134 4.64107 4.78331 4.88144 4.91813 4.98927 5.03311 5.04663 5.07601 5.08912 5.22433 5.31991 5.41745 5.44913 5.45384 5.54736 5.58437 5.62505 5.65571 5.67455 5.92708 6.11957 6.14985 6.51552 6.91386 7.28830 7.75358 8.72494 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003856 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.993142 B = 7259.877867 C = 8958.765705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.138 4.138 4 C -0.111 4.111 5 C -0.092 4.092 6 C -0.137 4.137 7 C -0.116 4.116 8 C -0.164 4.164 9 C 0.140 3.860 10 N -0.659 5.659 11 C 0.545 3.455 12 O -0.539 6.539 13 C -0.248 4.248 14 C -0.031 4.031 15 C -0.197 4.197 16 C -0.036 4.036 17 C -0.256 4.256 18 C 0.152 3.848 19 O -0.188 6.188 20 C -0.428 4.428 21 H 0.109 0.891 22 C -0.021 4.021 23 N -0.904 5.904 24 Si 1.022 2.978 25 H -0.244 1.244 26 H -0.269 1.269 27 H -0.269 1.269 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.419 0.581 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.125 0.875 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 19.597 -6.002 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 C -0.195 4.195 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.156 4.156 7 C -0.135 4.135 8 C -0.185 4.185 9 C 0.045 3.955 10 N -0.307 5.307 11 C 0.337 3.663 12 O -0.416 6.416 13 C -0.252 4.252 14 C -0.049 4.049 15 C -0.216 4.216 16 C -0.054 4.054 17 C -0.275 4.275 18 C 0.097 3.903 19 O -0.090 6.090 20 C -0.503 4.503 21 H 0.126 0.874 22 C -0.221 4.221 23 N -0.539 5.539 24 Si 0.841 3.159 25 H -0.167 1.167 26 H -0.194 1.194 27 H -0.194 1.194 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.260 0.740 40 H 0.174 0.826 41 H 0.184 0.816 42 H 0.174 0.826 43 H 0.143 0.857 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.591 18.892 -4.985 20.071 hybrid contribution 0.480 -1.432 0.122 1.515 sum -4.112 17.460 -4.863 18.585 Atomic orbital electron populations 1.21836 0.93170 1.01325 1.03396 1.20109 0.97007 0.96761 0.93536 1.21838 1.00894 0.93423 1.03333 1.19885 0.96877 0.97031 0.97528 1.21121 0.99430 1.00084 0.90409 1.21395 0.98121 0.95812 1.00252 1.21204 0.98457 0.97735 0.96112 1.21375 1.02582 1.01305 0.93248 1.17860 0.96640 0.96599 0.84391 1.43319 1.64953 1.11725 1.10654 1.18721 0.77595 0.81604 0.88414 1.90915 1.54141 1.51803 1.44786 1.19149 1.16049 0.93845 0.96204 1.21281 0.94542 0.97732 0.91368 1.21183 1.05378 0.96937 0.98071 1.21476 0.93431 0.92670 0.97827 1.21316 1.09957 1.02245 0.93961 1.20040 0.91724 0.89806 0.88755 1.84172 1.73903 1.17780 1.33139 1.22098 1.44268 0.81486 1.02486 0.87397 1.26769 0.95941 1.04993 0.94362 1.70332 1.42214 1.35457 1.05920 0.84501 0.78305 0.73530 0.79607 1.16695 1.19387 1.19430 0.91052 0.90476 0.94590 0.91352 0.93090 0.90469 0.91407 0.82430 0.83021 0.85602 0.88210 0.74039 0.82587 0.81554 0.82560 0.85706 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.95 71.98 0.64 -1.66 16 2 C -0.06 -1.04 2.98 -11.54 -0.03 -1.07 16 3 C -0.14 -1.85 9.05 71.98 0.65 -1.20 16 4 C -0.11 -2.88 4.80 -19.74 -0.09 -2.97 16 5 C -0.09 -2.06 8.75 22.25 0.19 -1.87 16 6 C -0.14 -3.38 10.04 22.29 0.22 -3.15 16 7 C -0.12 -3.80 10.04 22.25 0.22 -3.58 16 8 C -0.16 -6.70 8.71 22.40 0.20 -6.51 16 9 C 0.14 4.94 6.41 38.18 0.24 5.18 16 10 N -0.66 -23.17 4.99 -306.38 -1.53 -24.70 16 11 C 0.54 25.58 7.57 86.69 0.66 26.24 16 12 O -0.54 -32.17 12.33 16.85 0.21 -31.97 16 13 C -0.25 -10.86 5.89 -19.99 -0.12 -10.98 16 14 C -0.03 -0.93 9.53 22.52 0.21 -0.72 16 15 C -0.20 -5.15 10.02 22.25 0.22 -4.93 16 16 C -0.04 -1.09 10.03 22.30 0.22 -0.87 16 17 C -0.26 -10.81 9.16 22.36 0.20 -10.60 16 18 C 0.15 7.85 6.66 22.91 0.15 8.00 16 19 O -0.19 -11.95 7.84 0.76 0.01 -11.95 16 20 C -0.43 -25.87 9.49 67.93 0.64 -25.22 16 21 H 0.11 5.84 5.20 -2.92 -0.02 5.82 16 22 C -0.02 -1.26 5.49 84.85 0.47 -0.80 16 23 N -0.90 -59.35 13.67 21.62 0.30 -59.06 16 24 Si 1.02 44.35 29.55 68.60 2.03 46.37 16 25 H -0.24 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.07 0.97 7.13 -2.39 -0.02 0.95 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.30 5.99 -2.39 -0.01 1.29 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.80 7.70 -2.39 -0.02 0.78 16 35 H 0.16 2.33 7.10 -2.91 -0.02 2.31 16 36 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.10 5.06 5.79 -2.91 -0.02 5.04 16 39 H 0.42 10.90 4.96 -92.71 -0.46 10.44 16 40 H 0.16 3.22 6.42 -2.91 -0.02 3.20 16 41 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 42 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.13 5.35 5.63 -2.91 -0.02 5.33 16 44 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -88.08 362.31 6.50 -81.58 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.58 Total: 36.42 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 4.92 Total: -36.70 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.23 Total: -83.76 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: 0.21 Total: -43.91 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -88.08 6.50 -81.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194074943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.765 kcal (2) G-P(sol) polarization free energy of solvation -88.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds