Wall clock time and date at job start Tue Mar 31 2020 14:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 C 1.50705 * 109.47412 * 120.00283 * 2 1 3 5 5 C 1.38303 * 119.95938 * 299.98171 * 4 2 1 6 6 C 1.38265 * 120.14053 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07251 * 359.73408 * 6 5 4 8 8 C 1.38865 * 119.92960 * 0.51806 * 7 6 5 9 9 N 1.39847 * 120.07479 * 179.76794 * 8 7 6 10 10 C 1.34775 * 119.99878 * 324.62308 * 9 8 7 11 11 O 1.21600 * 119.99789 * 4.52685 * 10 9 8 12 12 C 1.47499 * 119.99836 * 184.52131 * 10 9 8 13 13 C 1.39685 * 120.20030 * 359.97438 * 12 10 9 14 14 C 1.37823 * 119.91562 * 179.97438 * 13 12 10 15 15 C 1.38568 * 120.32845 * 0.02562 * 14 13 12 16 16 C 1.38024 * 120.40779 * 359.97438 * 15 14 13 17 17 C 1.38837 * 120.07046 * 359.97438 * 16 15 14 18 18 O 1.35519 * 120.16036 * 180.02562 * 17 16 15 19 19 C 1.34806 * 117.00250 * 354.64493 * 18 17 16 20 20 H 1.08003 * 120.00118 * 5.02731 * 19 18 17 21 21 C 1.38703 * 119.99964 * 185.03245 * 19 18 17 22 22 N 1.31517 * 119.99891 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00135 * 359.97438 * 21 19 18 24 24 H 1.48489 * 109.47082 * 89.99922 * 23 21 19 25 25 H 1.48501 * 109.46932 * 210.00416 * 23 21 19 26 26 H 1.48508 * 109.46818 * 330.00112 * 23 21 19 27 27 C 1.38083 * 119.96347 * 120.00122 * 4 2 1 28 28 H 1.08994 * 109.46997 * 299.99761 * 1 2 3 29 29 H 1.09001 * 109.47566 * 59.99773 * 1 2 3 30 30 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46994 * 240.00667 * 2 1 3 32 32 H 1.09003 * 109.47146 * 60.00497 * 3 2 1 33 33 H 1.08998 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47036 * 300.00115 * 3 2 1 35 35 H 1.07996 * 119.93190 * 359.97438 * 5 4 2 36 36 H 1.08003 * 119.96235 * 180.02562 * 6 5 4 37 37 H 1.08005 * 120.03356 * 180.26364 * 7 6 5 38 38 H 0.96997 * 119.99827 * 144.62366 * 9 8 7 39 39 H 1.08004 * 120.03782 * 0.04217 * 13 12 10 40 40 H 1.08006 * 119.83339 * 180.02562 * 14 13 12 41 41 H 1.07999 * 119.79905 * 180.27716 * 15 14 13 42 42 H 1.07997 * 119.96916 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00079 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.03628 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6981 -0.2371 2.4862 6 6 2.1574 -0.8857 3.6176 7 6 2.9475 -2.0123 3.4969 8 6 3.2892 -2.4871 2.2375 9 7 4.0930 -3.6246 2.1118 10 6 5.0783 -3.8552 3.0019 11 8 5.2162 -3.1197 3.9603 12 6 5.9893 -4.9999 2.8135 13 6 5.8343 -5.8478 1.7143 14 6 6.6891 -6.9153 1.5437 15 6 7.7029 -7.1530 2.4580 16 6 7.8683 -6.3237 3.5489 17 6 7.0174 -5.2428 3.7365 18 8 7.1785 -4.4272 4.8067 19 6 8.1125 -4.7821 5.7117 20 1 8.7475 -5.6357 5.5259 21 6 8.2578 -4.0511 6.8814 22 7 9.1686 -4.3977 7.7646 23 14 7.1598 -2.5743 7.2025 24 1 5.9375 -3.0135 7.9222 25 1 7.8929 -1.5833 8.0306 26 1 6.7764 -1.9522 5.9096 27 6 2.8262 -1.8331 1.1028 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.0777 0.6415 2.5833 36 1 1.8943 -0.5138 4.5968 37 1 3.3024 -2.5209 4.3811 38 1 3.9412 -4.2476 1.3839 39 1 5.0461 -5.6664 0.9985 40 1 6.5683 -7.5698 0.6931 41 1 8.3707 -7.9893 2.3136 42 1 8.6611 -6.5153 4.2569 43 1 9.2700 -3.8867 8.5828 44 1 3.0868 -2.2022 0.1219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194089516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:56 Heat of formation + Delta-G solvation = -15.086608 kcal Electronic energy + Delta-G solvation = -26683.198225 eV Core-core repulsion = 22952.021117 eV Total energy + Delta-G solvation = -3731.177108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43256 -39.39178 -38.22020 -36.62343 -35.60298 -34.00150 -32.51494 -31.04798 -30.18274 -29.29008 -28.66820 -27.33931 -25.40249 -24.02116 -23.13675 -22.36667 -21.46808 -20.65447 -19.43727 -18.12921 -17.95754 -16.88463 -16.50706 -16.06737 -15.47052 -14.94809 -14.65369 -14.52517 -14.36163 -14.15123 -13.92619 -13.78877 -13.67350 -13.50968 -13.42556 -12.97087 -12.56675 -12.43004 -12.25167 -12.19951 -12.05592 -11.62724 -11.49130 -11.35690 -11.32139 -10.99312 -10.90938 -10.78548 -10.76832 -10.10634 -10.00686 -9.66141 -9.13866 -8.94341 -8.65379 -8.49700 -7.91191 -7.54484 -6.52747 -4.17901 1.30010 1.49294 1.62197 2.11920 3.27966 3.32744 3.34440 3.40650 3.62411 3.92089 4.30703 4.43581 4.54694 4.65072 4.67603 5.00020 5.01116 5.03390 5.16899 5.22599 5.29025 5.31222 5.41162 5.46943 5.52845 5.57034 5.62061 5.66170 5.77190 5.82655 5.87532 5.96210 6.02344 6.04565 6.14717 6.29409 6.43655 6.51739 6.54376 6.69725 6.73080 6.76953 6.93471 7.07926 7.23473 7.40774 7.59996 7.76163 7.88721 8.66521 8.82239 9.44102 10.52104 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.003664 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.264086 B = 7639.535447 C = 9447.766828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.063 4.063 5 C -0.139 4.139 6 C -0.099 4.099 7 C -0.126 4.126 8 C 0.164 3.836 9 N -0.683 5.683 10 C 0.560 3.440 11 O -0.498 6.498 12 C -0.230 4.230 13 C -0.039 4.039 14 C -0.220 4.220 15 C -0.048 4.048 16 C -0.225 4.225 17 C 0.202 3.798 18 O -0.164 6.164 19 C -0.397 4.397 20 H 0.109 0.891 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.238 1.238 27 C -0.151 4.151 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.405 0.595 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.139 0.861 43 H 0.283 0.717 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.399 4.180 -15.562 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.064 4.064 5 C -0.157 4.157 6 C -0.118 4.118 7 C -0.146 4.146 8 C 0.069 3.931 9 N -0.330 5.330 10 C 0.352 3.648 11 O -0.373 6.373 12 C -0.235 4.235 13 C -0.058 4.058 14 C -0.239 4.239 15 C -0.067 4.067 16 C -0.244 4.244 17 C 0.144 3.856 18 O -0.063 6.063 19 C -0.472 4.472 20 H 0.126 0.874 21 C -0.133 4.133 22 N -0.502 5.502 23 Si 0.723 3.277 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.161 1.161 27 C -0.171 4.171 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.158 0.842 38 H 0.241 0.759 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.093 0.907 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.199 4.949 -14.517 20.901 hybrid contribution -0.170 0.028 -0.068 0.185 sum -14.369 4.978 -14.585 21.070 Atomic orbital electron populations 1.21848 0.94429 1.01968 1.01766 1.20093 0.95814 0.96010 0.95362 1.21856 1.01435 0.95109 1.01741 1.19536 0.97295 0.94924 0.94623 1.20849 1.02226 1.00775 0.91896 1.21037 0.97010 0.95235 0.98513 1.21408 0.97764 0.98068 0.97408 1.17736 0.92727 0.88829 0.93799 1.43529 1.33142 1.24158 1.32140 1.18339 0.79579 0.84975 0.81920 1.90854 1.70719 1.47119 1.28583 1.18704 1.01761 1.01842 1.01150 1.20761 0.97224 0.93436 0.94402 1.20542 1.00037 1.01141 1.02184 1.20988 0.95848 0.97059 0.92804 1.21296 1.03647 0.98059 1.01436 1.18989 0.91065 0.88353 0.87163 1.83765 1.52030 1.42907 1.27640 1.20936 1.12394 1.16099 0.97729 0.87351 1.24503 0.96427 0.98660 0.93736 1.69632 1.31723 1.39753 1.09105 0.86215 0.79709 0.81225 0.80505 1.19841 1.21141 1.16062 1.20744 1.02474 0.96815 0.97101 0.92420 0.92584 0.92548 0.90635 0.92412 0.92441 0.92560 0.86490 0.86012 0.84216 0.75904 0.86831 0.86860 0.86697 0.84299 0.90724 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.01 37.15 0.33 -0.75 16 2 C -0.05 -0.48 3.09 -91.77 -0.28 -0.76 16 3 C -0.14 -1.20 9.01 37.16 0.33 -0.86 16 4 C -0.06 -0.73 4.78 -104.65 -0.50 -1.23 16 5 C -0.14 -1.66 8.71 -39.55 -0.34 -2.01 16 6 C -0.10 -1.38 10.04 -39.61 -0.40 -1.78 16 7 C -0.13 -2.10 8.69 -39.39 -0.34 -2.45 16 8 C 0.16 2.53 6.29 -83.72 -0.53 2.00 16 9 N -0.68 -10.54 5.28 -10.82 -0.06 -10.60 16 10 C 0.56 11.25 7.60 -12.49 -0.09 11.15 16 11 O -0.50 -12.11 12.62 -16.58 -0.21 -12.32 16 12 C -0.23 -4.56 5.89 -104.81 -0.62 -5.17 16 13 C -0.04 -0.61 9.53 -39.19 -0.37 -0.98 16 14 C -0.22 -3.29 10.02 -39.61 -0.40 -3.69 16 15 C -0.05 -0.80 10.03 -39.54 -0.40 -1.20 16 16 C -0.23 -4.64 9.16 -39.44 -0.36 -5.00 16 17 C 0.20 4.68 6.66 -38.59 -0.26 4.43 16 18 O -0.16 -4.42 6.67 -21.03 -0.14 -4.56 16 19 C -0.40 -11.19 9.95 30.90 0.31 -10.88 16 20 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 21 C 0.07 2.07 5.49 -17.51 -0.10 1.97 16 22 N -0.87 -24.97 13.96 55.48 0.77 -24.19 16 23 Si 0.90 22.96 28.62 -169.99 -4.86 18.10 16 24 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.24 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.15 -1.91 9.59 -39.39 -0.38 -2.29 16 28 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 32 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.12 1.15 7.09 -52.49 -0.37 0.78 16 36 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.14 2.69 6.25 -52.48 -0.33 2.36 16 38 H 0.40 4.75 6.86 -40.82 -0.28 4.47 16 39 H 0.11 1.29 6.41 -52.48 -0.34 0.95 16 40 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 2.97 5.64 -52.49 -0.30 2.68 16 43 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.12 1.26 7.94 -52.49 -0.42 0.84 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -32.19 365.33 -8.97 -41.16 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.59 Total: 6.42 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -4.39 Total: -19.51 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.72 Total: -34.79 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.35 Total: -16.88 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.86 Total: 18.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.19 -8.97 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194089516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.071 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds