Wall clock time and date at job start Tue Mar 31 2020 14:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 C 1.50705 * 109.47412 * 120.00283 * 2 1 3 5 5 C 1.38303 * 119.95938 * 299.98171 * 4 2 1 6 6 C 1.38265 * 120.14053 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07251 * 359.73408 * 6 5 4 8 8 C 1.38865 * 119.92960 * 0.51806 * 7 6 5 9 9 N 1.39847 * 120.07479 * 179.76794 * 8 7 6 10 10 C 1.34775 * 119.99878 * 324.62308 * 9 8 7 11 11 O 1.21600 * 119.99789 * 4.52685 * 10 9 8 12 12 C 1.47499 * 119.99836 * 184.52131 * 10 9 8 13 13 C 1.39685 * 120.20030 * 359.97438 * 12 10 9 14 14 C 1.37823 * 119.91562 * 179.97438 * 13 12 10 15 15 C 1.38568 * 120.32845 * 0.02562 * 14 13 12 16 16 C 1.38024 * 120.40779 * 359.97438 * 15 14 13 17 17 C 1.38837 * 120.07046 * 359.97438 * 16 15 14 18 18 O 1.35519 * 120.16036 * 180.02562 * 17 16 15 19 19 C 1.34806 * 117.00250 * 354.64493 * 18 17 16 20 20 H 1.08003 * 120.00118 * 5.02731 * 19 18 17 21 21 C 1.38703 * 119.99964 * 185.03245 * 19 18 17 22 22 N 1.31517 * 119.99891 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00135 * 359.97438 * 21 19 18 24 24 H 1.48489 * 109.47082 * 89.99922 * 23 21 19 25 25 H 1.48501 * 109.46932 * 210.00416 * 23 21 19 26 26 H 1.48508 * 109.46818 * 330.00112 * 23 21 19 27 27 C 1.38083 * 119.96347 * 120.00122 * 4 2 1 28 28 H 1.08994 * 109.46997 * 299.99761 * 1 2 3 29 29 H 1.09001 * 109.47566 * 59.99773 * 1 2 3 30 30 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46994 * 240.00667 * 2 1 3 32 32 H 1.09003 * 109.47146 * 60.00497 * 3 2 1 33 33 H 1.08998 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47036 * 300.00115 * 3 2 1 35 35 H 1.07996 * 119.93190 * 359.97438 * 5 4 2 36 36 H 1.08003 * 119.96235 * 180.02562 * 6 5 4 37 37 H 1.08005 * 120.03356 * 180.26364 * 7 6 5 38 38 H 0.96997 * 119.99827 * 144.62366 * 9 8 7 39 39 H 1.08004 * 120.03782 * 0.04217 * 13 12 10 40 40 H 1.08006 * 119.83339 * 180.02562 * 14 13 12 41 41 H 1.07999 * 119.79905 * 180.27716 * 15 14 13 42 42 H 1.07997 * 119.96916 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00079 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.03628 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6981 -0.2371 2.4862 6 6 2.1574 -0.8857 3.6176 7 6 2.9475 -2.0123 3.4969 8 6 3.2892 -2.4871 2.2375 9 7 4.0930 -3.6246 2.1118 10 6 5.0783 -3.8552 3.0019 11 8 5.2162 -3.1197 3.9603 12 6 5.9893 -4.9999 2.8135 13 6 5.8343 -5.8478 1.7143 14 6 6.6891 -6.9153 1.5437 15 6 7.7029 -7.1530 2.4580 16 6 7.8683 -6.3237 3.5489 17 6 7.0174 -5.2428 3.7365 18 8 7.1785 -4.4272 4.8067 19 6 8.1125 -4.7821 5.7117 20 1 8.7475 -5.6357 5.5259 21 6 8.2578 -4.0511 6.8814 22 7 9.1686 -4.3977 7.7646 23 14 7.1598 -2.5743 7.2025 24 1 5.9375 -3.0135 7.9222 25 1 7.8929 -1.5833 8.0306 26 1 6.7764 -1.9522 5.9096 27 6 2.8262 -1.8331 1.1028 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.0777 0.6415 2.5833 36 1 1.8943 -0.5138 4.5968 37 1 3.3024 -2.5209 4.3811 38 1 3.9412 -4.2476 1.3839 39 1 5.0461 -5.6664 0.9985 40 1 6.5683 -7.5698 0.6931 41 1 8.3707 -7.9893 2.3136 42 1 8.6611 -6.5153 4.2569 43 1 9.2700 -3.8867 8.5828 44 1 3.0868 -2.2022 0.1219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194089516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:55 Heat of formation + Delta-G solvation = -33.311876 kcal Electronic energy + Delta-G solvation = -26683.988532 eV Core-core repulsion = 22952.021117 eV Total energy + Delta-G solvation = -3731.967415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82624 -40.78805 -39.60544 -38.21534 -36.67059 -35.20980 -34.55287 -32.46408 -31.21856 -30.84105 -29.82716 -27.92291 -27.34155 -25.36099 -24.22771 -23.56033 -22.91122 -21.96864 -20.59510 -19.82841 -19.63718 -18.26794 -17.85786 -17.23704 -16.65293 -16.59122 -16.16544 -15.91005 -15.80057 -15.51896 -15.37629 -15.23661 -14.63408 -14.56096 -14.44003 -14.41020 -14.25984 -14.07242 -13.42783 -13.20274 -13.10234 -12.92242 -12.82106 -12.62965 -12.53260 -12.43104 -12.06657 -12.03588 -11.83853 -11.56190 -11.52055 -11.24134 -11.00357 -10.68903 -9.96603 -9.70776 -9.23799 -9.03164 -8.61540 -6.30073 -0.09070 0.42249 0.43174 0.61748 1.21252 1.26078 1.54394 1.91067 2.04858 2.25615 2.70854 2.83988 2.97431 3.12347 3.72938 3.75240 3.91863 3.97537 4.13295 4.21959 4.31324 4.37235 4.37727 4.44166 4.49852 4.58377 4.59029 4.69576 4.76937 4.86905 4.97005 5.03132 5.05124 5.05711 5.23804 5.24414 5.34449 5.41278 5.43832 5.44466 5.45044 5.58990 5.61052 5.66587 5.72764 5.80436 6.10546 6.11936 6.48314 6.75413 7.23117 7.54411 8.48951 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.003664 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.264086 B = 7639.535447 C = 9447.766828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.059 4.059 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.159 4.159 8 C 0.140 3.860 9 N -0.660 5.660 10 C 0.554 3.446 11 O -0.550 6.550 12 C -0.235 4.235 13 C -0.029 4.029 14 C -0.187 4.187 15 C -0.039 4.039 16 C -0.250 4.250 17 C 0.164 3.836 18 O -0.209 6.209 19 C -0.402 4.402 20 H 0.094 0.906 21 C 0.028 3.972 22 N -0.910 5.910 23 Si 0.953 3.047 24 H -0.276 1.276 25 H -0.265 1.265 26 H -0.268 1.268 27 C -0.142 4.142 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.424 0.576 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.153 0.847 42 H 0.116 0.884 43 H 0.286 0.714 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 3.778 -20.814 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.060 4.060 5 C -0.150 4.150 6 C -0.128 4.128 7 C -0.179 4.179 8 C 0.045 3.955 9 N -0.308 5.308 10 C 0.345 3.655 11 O -0.428 6.428 12 C -0.239 4.239 13 C -0.047 4.047 14 C -0.206 4.206 15 C -0.057 4.057 16 C -0.270 4.270 17 C 0.110 3.890 18 O -0.113 6.113 19 C -0.479 4.479 20 H 0.111 0.889 21 C -0.172 4.172 22 N -0.549 5.549 23 Si 0.777 3.223 24 H -0.202 1.202 25 H -0.190 1.190 26 H -0.193 1.193 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.264 0.736 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.171 0.829 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.913 4.515 -19.850 26.466 hybrid contribution 0.425 -0.014 1.064 1.146 sum -16.488 4.501 -18.786 25.397 Atomic orbital electron populations 1.21841 0.93206 1.02143 1.02659 1.20166 0.96713 0.95976 0.94137 1.21869 1.00694 0.94922 1.02721 1.19985 0.95978 0.94316 0.95713 1.21156 1.01472 1.00931 0.91403 1.21199 0.96867 0.94696 1.00029 1.21286 0.99959 0.99705 0.96976 1.17924 0.93732 0.89513 0.94294 1.43183 1.31616 1.24578 1.31388 1.18560 0.80334 0.84633 0.81927 1.90852 1.72178 1.48857 1.30891 1.19132 1.00660 1.02474 1.01670 1.21375 0.98222 0.91965 0.93164 1.21251 0.97113 1.00156 1.02034 1.21482 0.96565 0.96641 0.90992 1.21343 1.03447 0.98956 1.03206 1.19749 0.92850 0.89302 0.87054 1.83760 1.53141 1.45087 1.29311 1.20902 1.12730 1.15708 0.98510 0.88861 1.25009 0.97651 1.00563 0.94016 1.69673 1.33717 1.41489 1.10053 0.85448 0.78491 0.79526 0.78799 1.20152 1.18983 1.19266 1.21033 1.01494 0.96520 0.97205 0.92438 0.90894 0.92743 0.89330 0.92445 0.93627 0.90697 0.83907 0.85187 0.88172 0.73577 0.81547 0.81317 0.82946 0.86571 0.90393 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.01 71.98 0.65 -0.93 16 2 C -0.05 -0.71 3.09 -11.54 -0.04 -0.74 16 3 C -0.14 -1.91 9.01 71.98 0.65 -1.26 16 4 C -0.06 -1.20 4.78 -19.88 -0.10 -1.30 16 5 C -0.13 -2.90 8.71 22.29 0.19 -2.70 16 6 C -0.11 -3.08 10.04 22.25 0.22 -2.85 16 7 C -0.16 -5.54 8.69 22.39 0.19 -5.35 16 8 C 0.14 4.22 6.29 38.17 0.24 4.46 16 9 N -0.66 -19.50 5.28 -306.39 -1.62 -21.12 16 10 C 0.55 22.66 7.60 86.69 0.66 23.32 16 11 O -0.55 -28.61 12.62 16.87 0.21 -28.39 16 12 C -0.23 -9.18 5.89 -19.99 -0.12 -9.29 16 13 C -0.03 -0.76 9.53 22.52 0.21 -0.54 16 14 C -0.19 -4.44 10.02 22.25 0.22 -4.22 16 15 C -0.04 -1.15 10.03 22.30 0.22 -0.93 16 16 C -0.25 -10.52 9.16 22.36 0.20 -10.32 16 17 C 0.16 7.90 6.66 22.91 0.15 8.05 16 18 O -0.21 -12.20 6.67 0.94 0.01 -12.19 16 19 C -0.40 -24.63 9.95 67.93 0.68 -23.96 16 20 H 0.09 5.75 5.44 -2.91 -0.02 5.73 16 21 C 0.03 1.72 5.49 84.85 0.47 2.19 16 22 N -0.91 -55.88 13.96 21.62 0.30 -55.58 16 23 Si 0.95 51.41 28.62 68.60 1.96 53.37 16 24 H -0.28 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.27 -15.63 7.11 99.48 0.71 -14.92 16 27 C -0.14 -3.21 9.59 22.40 0.21 -3.00 16 28 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.03 7.87 -2.38 -0.02 1.01 16 32 H 0.06 0.76 7.38 -2.39 -0.02 0.74 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 2.39 7.09 -2.91 -0.02 2.37 16 36 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 37 H 0.10 4.27 6.25 -2.91 -0.02 4.25 16 38 H 0.42 8.39 6.86 -92.71 -0.64 7.75 16 39 H 0.17 2.60 6.41 -2.91 -0.02 2.58 16 40 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 43 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 44 H 0.15 2.44 7.94 -2.91 -0.02 2.42 16 Total: -1.00 -80.89 365.33 6.20 -74.69 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.40 Total: 18.60 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.94 Total: -29.38 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.32 Total: -76.70 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: 0.22 Total: -40.58 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.96 Total: 53.37 kcal Total: -80.89 6.20 -74.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194089516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.380 kcal (2) G-P(sol) polarization free energy of solvation -80.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds