Wall clock time and date at job start Tue Mar 31 2020 14:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 C 1.50704 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.38275 * 119.93244 * 89.99868 * 4 3 2 6 6 C 1.38103 * 120.07661 * 179.97438 * 5 4 3 7 7 C 1.38892 * 119.92605 * 0.02562 * 6 5 4 8 8 N 1.39847 * 120.07468 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00014 * 33.59831 * 8 7 6 10 10 O 1.21606 * 119.99762 * 5.24825 * 9 8 7 11 11 C 1.47499 * 120.00062 * 185.24689 * 9 8 7 12 12 C 1.39679 * 120.20189 * 359.97438 * 11 9 8 13 13 C 1.37824 * 119.92082 * 179.97438 * 12 11 9 14 14 C 1.38571 * 120.32675 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40154 * 359.97438 * 14 13 12 16 16 C 1.38831 * 120.07577 * 359.97438 * 15 14 13 17 17 O 1.35526 * 120.16013 * 180.02562 * 16 15 14 18 18 C 1.34808 * 117.00379 * 353.91859 * 17 16 15 19 19 H 1.08001 * 119.99807 * 354.61761 * 18 17 16 20 20 C 1.38696 * 120.00086 * 174.61369 * 18 17 16 21 21 N 1.31512 * 120.00202 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47236 * 59.99665 * 22 20 18 24 24 H 1.48495 * 109.47058 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47031 * 300.00137 * 22 20 18 26 26 C 1.38893 * 119.85566 * 0.27858 * 7 6 5 27 27 C 1.38118 * 119.92352 * 359.42182 * 26 7 6 28 28 H 1.09000 * 109.47378 * 300.00489 * 1 2 3 29 29 H 1.09001 * 109.47214 * 60.00122 * 1 2 3 30 30 H 1.09006 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47378 * 239.99510 * 2 1 3 32 32 H 1.09001 * 109.47214 * 119.99878 * 2 1 3 33 33 H 1.09000 * 109.47329 * 59.99481 * 3 2 1 34 34 H 1.09006 * 109.46639 * 299.99382 * 3 2 1 35 35 H 1.08009 * 119.96268 * 359.96988 * 5 4 3 36 36 H 1.07998 * 120.04219 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00084 * 213.59668 * 8 7 6 38 38 H 1.08005 * 120.03558 * 0.04973 * 12 11 9 39 39 H 1.08002 * 119.83437 * 180.29369 * 13 12 11 40 40 H 1.07998 * 119.79803 * 179.97438 * 14 13 12 41 41 H 1.08009 * 119.96474 * 180.02562 * 15 14 13 42 42 H 0.97000 * 120.00454 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.03944 * 179.73110 * 26 7 6 44 44 H 1.08000 * 119.96135 * 180.27402 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2365 1.4426 -1.1992 6 6 5.6175 1.4431 -1.2033 7 6 6.3139 1.4429 -0.0016 8 7 7.7124 1.4439 -0.0021 9 6 8.3855 2.0909 -0.9741 10 8 7.7804 2.7527 -1.7956 11 6 9.8559 1.9962 -1.0416 12 6 10.5550 1.2376 -0.0999 13 6 11.9289 1.1527 -0.1686 14 6 12.6219 1.8171 -1.1680 15 6 11.9445 2.5704 -2.1054 16 6 10.5605 2.6665 -2.0525 17 8 9.8936 3.4053 -2.9724 18 6 10.6379 4.1239 -3.8367 19 1 11.7111 4.1629 -3.7222 20 6 10.0255 4.8130 -4.8729 21 7 8.7186 4.7658 -5.0120 22 14 11.0569 5.8082 -6.0709 23 1 12.0216 4.9115 -6.7571 24 1 10.1700 6.4449 -7.0774 25 1 11.7992 6.8596 -5.3302 26 6 5.6184 1.4364 1.2006 27 6 4.2373 1.4422 1.1976 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.6943 1.4422 -2.1334 36 1 6.1554 1.4427 -2.1398 37 1 8.1980 0.9791 0.6972 38 1 10.0195 0.7173 0.6805 39 1 12.4678 0.5620 0.5574 40 1 13.6985 1.7450 -1.2136 41 1 12.4916 3.0849 -2.8816 42 1 8.2902 5.2474 -5.7369 43 1 6.1570 1.4318 2.1368 44 1 3.6959 1.4416 2.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194089599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:59 Heat of formation + Delta-G solvation = -19.008517 kcal Electronic energy + Delta-G solvation = -26230.227824 eV Core-core repulsion = 22498.880649 eV Total energy + Delta-G solvation = -3731.347175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21162 -39.13746 -37.92011 -36.41906 -35.36208 -33.72108 -32.39991 -31.00228 -30.69299 -29.57479 -28.98032 -26.10302 -25.38319 -23.40960 -22.68603 -22.10114 -21.46102 -20.67502 -19.80759 -18.21260 -17.84267 -16.89587 -16.28004 -15.53550 -15.47677 -14.74859 -14.61225 -14.51552 -14.31114 -14.02856 -13.98092 -13.77039 -13.55901 -13.37777 -13.05207 -12.98261 -12.61656 -12.56044 -12.16219 -12.09082 -11.75776 -11.42970 -11.32257 -11.21464 -11.05123 -10.93328 -10.91758 -10.84354 -10.66848 -10.51067 -9.79461 -9.64696 -9.00101 -8.91364 -8.64165 -8.36500 -7.66130 -7.36774 -6.49976 -4.09544 1.42129 1.65240 1.75169 2.26104 3.09029 3.10906 3.13638 3.52323 3.56993 3.89395 4.05862 4.57184 4.78012 4.82957 4.99741 5.03668 5.06445 5.08302 5.20525 5.31836 5.39100 5.44575 5.44583 5.60120 5.64910 5.68804 5.72262 5.80661 5.85810 5.92065 6.01708 6.06296 6.10103 6.18310 6.27215 6.49615 6.54667 6.58279 6.68936 6.83738 6.85393 6.90816 6.99789 7.17804 7.22382 7.37793 7.62756 7.84446 7.95116 8.87812 8.91887 9.60269 10.63570 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003101 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.493872 B = 9028.510590 C =11016.241714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.075 4.075 4 C -0.112 4.112 5 C -0.095 4.095 6 C -0.117 4.117 7 C 0.163 3.837 8 N -0.686 5.686 9 C 0.552 3.448 10 O -0.481 6.481 11 C -0.231 4.231 12 C -0.037 4.037 13 C -0.230 4.230 14 C -0.049 4.049 15 C -0.235 4.235 16 C 0.189 3.811 17 O -0.122 6.122 18 C -0.404 4.404 19 H 0.094 0.906 20 C 0.046 3.954 21 N -0.831 5.831 22 Si 0.941 3.059 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.268 1.268 26 C -0.155 4.155 27 C -0.100 4.100 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.402 0.598 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.133 0.867 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.756 -8.766 11.164 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.113 4.113 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.138 4.138 7 C 0.068 3.932 8 N -0.333 5.333 9 C 0.344 3.656 10 O -0.353 6.353 11 C -0.236 4.236 12 C -0.056 4.056 13 C -0.249 4.249 14 C -0.068 4.068 15 C -0.255 4.255 16 C 0.129 3.871 17 O -0.019 6.019 18 C -0.479 4.479 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.462 5.462 22 Si 0.765 3.235 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.193 1.193 26 C -0.176 4.176 27 C -0.119 4.119 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.239 0.761 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.083 0.917 43 H 0.139 0.861 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.582 -8.098 10.257 15.108 hybrid contribution 1.031 0.250 -0.162 1.073 sum -6.551 -7.848 10.095 14.367 Atomic orbital electron populations 1.21796 0.95995 1.01473 1.01758 1.21521 0.95307 0.96483 1.02348 1.20554 0.91206 0.96952 1.02560 1.19757 0.95345 1.03049 0.93174 1.20897 0.93590 0.99424 0.97450 1.21279 0.94098 1.00227 0.98178 1.17766 0.83027 0.98546 0.93851 1.43611 1.04085 1.55141 1.30456 1.18381 0.87643 0.78925 0.80696 1.90961 1.69068 1.37359 1.37925 1.18695 0.91334 1.11615 1.01956 1.20760 0.94337 0.95051 0.95435 1.20463 0.93800 1.07821 1.02806 1.20920 0.98749 0.93941 0.93142 1.21170 0.93863 1.06912 1.03522 1.19260 0.90294 0.88660 0.88860 1.84177 1.33854 1.47999 1.35914 1.21458 0.91792 1.26414 1.08246 0.88866 1.25394 0.96204 0.97438 0.97242 1.70101 1.08398 1.37853 1.29800 0.85788 0.78950 0.79451 0.79299 1.19320 1.20099 1.19314 1.20820 0.94449 1.06023 0.96291 1.20685 0.93211 1.00684 0.97292 0.92841 0.92719 0.92873 0.91842 0.91995 0.91404 0.91237 0.86109 0.84440 0.76148 0.87034 0.87142 0.87060 0.84969 0.91688 0.86130 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.15 0.37 -0.78 16 2 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 3 C -0.08 -0.77 5.34 -27.88 -0.15 -0.92 16 4 C -0.11 -1.46 5.14 -104.59 -0.54 -2.00 16 5 C -0.09 -1.44 9.69 -39.62 -0.38 -1.83 16 6 C -0.12 -2.12 8.65 -39.39 -0.34 -2.47 16 7 C 0.16 2.74 6.27 -83.72 -0.53 2.21 16 8 N -0.69 -11.59 5.28 -10.81 -0.06 -11.65 16 9 C 0.55 12.09 7.50 -12.49 -0.09 11.99 16 10 O -0.48 -12.90 12.87 -16.58 -0.21 -13.11 16 11 C -0.23 -4.93 5.89 -104.82 -0.62 -5.55 16 12 C -0.04 -0.62 9.53 -39.19 -0.37 -0.99 16 13 C -0.23 -3.67 10.02 -39.61 -0.40 -4.06 16 14 C -0.05 -0.84 10.03 -39.54 -0.40 -1.24 16 15 C -0.24 -4.96 9.12 -39.44 -0.36 -5.32 16 16 C 0.19 4.62 6.66 -38.59 -0.26 4.37 16 17 O -0.12 -3.53 7.84 -21.06 -0.16 -3.70 16 18 C -0.40 -11.25 9.44 30.90 0.29 -10.96 16 19 H 0.09 2.35 5.30 -52.49 -0.28 2.07 16 20 C 0.05 1.25 5.49 -17.52 -0.10 1.16 16 21 N -0.83 -24.72 13.67 55.48 0.76 -23.97 16 22 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.16 -2.12 9.96 -39.38 -0.39 -2.51 16 27 C -0.10 -1.25 9.69 -39.61 -0.38 -1.64 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 36 H 0.14 2.89 6.44 -52.49 -0.34 2.55 16 37 H 0.40 5.26 6.86 -40.82 -0.28 4.98 16 38 H 0.11 1.41 6.42 -52.48 -0.34 1.08 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.13 2.74 5.72 -52.48 -0.30 2.44 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -33.55 371.01 -9.65 -43.20 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.74 Total: 10.14 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -4.80 Total: -21.77 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.70 Total: -35.61 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.38 Total: -16.81 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.55 -9.65 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194089599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.190 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds