Wall clock time and date at job start Tue Mar 31 2020 14:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 C 1.50704 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.38275 * 119.93244 * 89.99868 * 4 3 2 6 6 C 1.38103 * 120.07661 * 179.97438 * 5 4 3 7 7 C 1.38892 * 119.92605 * 0.02562 * 6 5 4 8 8 N 1.39847 * 120.07468 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00014 * 33.59831 * 8 7 6 10 10 O 1.21606 * 119.99762 * 5.24825 * 9 8 7 11 11 C 1.47499 * 120.00062 * 185.24689 * 9 8 7 12 12 C 1.39679 * 120.20189 * 359.97438 * 11 9 8 13 13 C 1.37824 * 119.92082 * 179.97438 * 12 11 9 14 14 C 1.38571 * 120.32675 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40154 * 359.97438 * 14 13 12 16 16 C 1.38831 * 120.07577 * 359.97438 * 15 14 13 17 17 O 1.35526 * 120.16013 * 180.02562 * 16 15 14 18 18 C 1.34808 * 117.00379 * 353.91859 * 17 16 15 19 19 H 1.08001 * 119.99807 * 354.61761 * 18 17 16 20 20 C 1.38696 * 120.00086 * 174.61369 * 18 17 16 21 21 N 1.31512 * 120.00202 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47236 * 59.99665 * 22 20 18 24 24 H 1.48495 * 109.47058 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47031 * 300.00137 * 22 20 18 26 26 C 1.38893 * 119.85566 * 0.27858 * 7 6 5 27 27 C 1.38118 * 119.92352 * 359.42182 * 26 7 6 28 28 H 1.09000 * 109.47378 * 300.00489 * 1 2 3 29 29 H 1.09001 * 109.47214 * 60.00122 * 1 2 3 30 30 H 1.09006 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47378 * 239.99510 * 2 1 3 32 32 H 1.09001 * 109.47214 * 119.99878 * 2 1 3 33 33 H 1.09000 * 109.47329 * 59.99481 * 3 2 1 34 34 H 1.09006 * 109.46639 * 299.99382 * 3 2 1 35 35 H 1.08009 * 119.96268 * 359.96988 * 5 4 3 36 36 H 1.07998 * 120.04219 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00084 * 213.59668 * 8 7 6 38 38 H 1.08005 * 120.03558 * 0.04973 * 12 11 9 39 39 H 1.08002 * 119.83437 * 180.29369 * 13 12 11 40 40 H 1.07998 * 119.79803 * 179.97438 * 14 13 12 41 41 H 1.08009 * 119.96474 * 180.02562 * 15 14 13 42 42 H 0.97000 * 120.00454 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.03944 * 179.73110 * 26 7 6 44 44 H 1.08000 * 119.96135 * 180.27402 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2365 1.4426 -1.1992 6 6 5.6175 1.4431 -1.2033 7 6 6.3139 1.4429 -0.0016 8 7 7.7124 1.4439 -0.0021 9 6 8.3855 2.0909 -0.9741 10 8 7.7804 2.7527 -1.7956 11 6 9.8559 1.9962 -1.0416 12 6 10.5550 1.2376 -0.0999 13 6 11.9289 1.1527 -0.1686 14 6 12.6219 1.8171 -1.1680 15 6 11.9445 2.5704 -2.1054 16 6 10.5605 2.6665 -2.0525 17 8 9.8936 3.4053 -2.9724 18 6 10.6379 4.1239 -3.8367 19 1 11.7111 4.1629 -3.7222 20 6 10.0255 4.8130 -4.8729 21 7 8.7186 4.7658 -5.0120 22 14 11.0569 5.8082 -6.0709 23 1 12.0216 4.9115 -6.7571 24 1 10.1700 6.4449 -7.0774 25 1 11.7992 6.8596 -5.3302 26 6 5.6184 1.4364 1.2006 27 6 4.2373 1.4422 1.1976 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.6943 1.4422 -2.1334 36 1 6.1554 1.4427 -2.1398 37 1 8.1980 0.9791 0.6972 38 1 10.0195 0.7173 0.6805 39 1 12.4678 0.5620 0.5574 40 1 13.6985 1.7450 -1.2136 41 1 12.4916 3.0849 -2.8816 42 1 8.2902 5.2474 -5.7369 43 1 6.1570 1.4318 2.1368 44 1 3.6959 1.4416 2.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194089599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:59 Heat of formation + Delta-G solvation = -38.916197 kcal Electronic energy + Delta-G solvation = -26231.091086 eV Core-core repulsion = 22498.880649 eV Total energy + Delta-G solvation = -3732.210436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72241 -40.62611 -39.41869 -38.07601 -36.54598 -34.94415 -34.35415 -32.42199 -31.87105 -30.74896 -30.58094 -27.51181 -26.96142 -24.85017 -23.91641 -23.39516 -22.72881 -21.79328 -21.26614 -19.92516 -19.49216 -18.36018 -17.92727 -16.77930 -16.52923 -16.40416 -16.14887 -15.99898 -15.84317 -15.41955 -15.33730 -15.07836 -14.90852 -14.48454 -14.40025 -14.28802 -14.24511 -13.71077 -13.57020 -13.26327 -13.00031 -12.87299 -12.73960 -12.52172 -12.39170 -12.22038 -12.17096 -12.02919 -11.85272 -11.48761 -11.45700 -11.13564 -10.85122 -10.64334 -9.90474 -9.85715 -9.11723 -8.88836 -8.47528 -6.18432 -0.03183 0.42424 0.47706 0.69917 1.30519 1.43509 1.48514 1.99600 2.11001 2.14157 2.79847 2.89668 3.20152 3.40641 3.79354 3.88914 3.96052 4.04123 4.08622 4.21094 4.26511 4.30002 4.47915 4.49151 4.52597 4.56818 4.62059 4.73190 4.85114 4.92699 4.94878 5.03809 5.05926 5.07861 5.11853 5.23288 5.31152 5.38262 5.42303 5.46573 5.49963 5.58815 5.61645 5.66691 5.74134 5.92562 6.12758 6.13852 6.55198 6.91621 7.33071 7.76076 8.72632 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003101 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.493872 B = 9028.510590 C =11016.241714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.074 4.074 4 C -0.103 4.103 5 C -0.110 4.110 6 C -0.149 4.149 7 C 0.133 3.867 8 N -0.662 5.662 9 C 0.546 3.454 10 O -0.545 6.545 11 C -0.247 4.247 12 C -0.029 4.029 13 C -0.199 4.199 14 C -0.037 4.037 15 C -0.257 4.257 16 C 0.150 3.850 17 O -0.187 6.187 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.021 4.021 21 N -0.905 5.905 22 Si 1.022 2.978 23 H -0.252 1.252 24 H -0.274 1.274 25 H -0.255 1.255 26 C -0.141 4.141 27 C -0.094 4.094 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.423 0.577 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.271 0.729 43 H 0.157 0.843 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -10.819 15.756 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.111 4.111 4 C -0.104 4.104 5 C -0.129 4.129 6 C -0.170 4.170 7 C 0.038 3.962 8 N -0.311 5.311 9 C 0.338 3.662 10 O -0.422 6.422 11 C -0.252 4.252 12 C -0.047 4.047 13 C -0.217 4.217 14 C -0.055 4.055 15 C -0.276 4.276 16 C 0.095 3.905 17 O -0.090 6.090 18 C -0.503 4.503 19 H 0.124 0.876 20 C -0.221 4.221 21 N -0.540 5.540 22 Si 0.840 3.160 23 H -0.176 1.176 24 H -0.198 1.198 25 H -0.179 1.179 26 C -0.161 4.161 27 C -0.112 4.112 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.263 0.737 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.173 0.827 41 H 0.142 0.858 42 H 0.080 0.920 43 H 0.175 0.825 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.286 -10.229 14.949 19.174 hybrid contribution 0.680 0.556 -1.162 1.457 sum -5.606 -9.674 13.787 17.750 Atomic orbital electron populations 1.21776 0.94695 1.02114 1.02206 1.21487 0.96398 0.95363 1.02110 1.20628 0.88875 0.98100 1.03505 1.20132 0.97082 1.00734 0.92419 1.21003 0.92585 1.00237 0.99045 1.21097 0.95440 1.03181 0.97273 1.17993 0.82793 1.00768 0.94616 1.43237 1.04419 1.53943 1.29476 1.18697 0.88236 0.78499 0.80759 1.90951 1.70274 1.40366 1.40594 1.19157 0.91447 1.12104 1.02482 1.21327 0.95256 0.93371 0.94783 1.21192 0.93410 1.05218 1.01910 1.21472 1.01015 0.91536 0.91486 1.21317 0.92627 1.08533 1.05117 1.20087 0.92268 0.89242 0.88944 1.84182 1.35322 1.51148 1.38327 1.21989 0.92527 1.27193 1.08620 0.87552 1.26765 0.97477 0.98658 0.99189 1.70306 1.10966 1.41114 1.31615 0.84631 0.77121 0.77845 0.76429 1.17609 1.19833 1.17874 1.21187 0.95105 1.03769 0.96013 1.21196 0.92941 0.98563 0.98519 0.91776 0.92920 0.92184 0.93107 0.91268 0.89275 0.91530 0.86062 0.89300 0.73744 0.82095 0.81599 0.82662 0.85790 0.92003 0.82544 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 3 C -0.07 -1.35 5.34 29.85 0.16 -1.19 16 4 C -0.10 -2.56 5.14 -19.84 -0.10 -2.66 16 5 C -0.11 -3.57 9.69 22.25 0.22 -3.35 16 6 C -0.15 -5.92 8.65 22.39 0.19 -5.72 16 7 C 0.13 4.52 6.27 38.18 0.24 4.76 16 8 N -0.66 -22.47 5.28 -306.38 -1.62 -24.08 16 9 C 0.55 25.38 7.50 86.69 0.65 26.03 16 10 O -0.54 -32.51 12.87 16.85 0.22 -32.29 16 11 C -0.25 -10.76 5.89 -19.99 -0.12 -10.88 16 12 C -0.03 -0.86 9.53 22.52 0.21 -0.65 16 13 C -0.20 -5.17 10.02 22.25 0.22 -4.95 16 14 C -0.04 -1.13 10.03 22.30 0.22 -0.91 16 15 C -0.26 -10.90 9.12 22.36 0.20 -10.70 16 16 C 0.15 7.74 6.66 22.91 0.15 7.90 16 17 O -0.19 -11.97 7.84 0.84 0.01 -11.96 16 18 C -0.43 -25.94 9.44 67.93 0.64 -25.30 16 19 H 0.11 5.76 5.30 -2.91 -0.02 5.75 16 20 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 21 N -0.90 -59.53 13.67 21.62 0.30 -59.23 16 22 Si 1.02 44.40 29.55 68.60 2.03 46.42 16 23 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 26 C -0.14 -3.47 9.96 22.40 0.22 -3.25 16 27 C -0.09 -2.04 9.69 22.25 0.22 -1.83 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 34 H 0.07 1.28 8.08 -2.38 -0.02 1.26 16 35 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.09 4.35 6.44 -2.91 -0.02 4.33 16 37 H 0.42 9.98 6.86 -92.71 -0.64 9.35 16 38 H 0.16 3.14 6.42 -2.91 -0.02 3.12 16 39 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.12 5.34 5.72 -2.91 -0.02 5.32 16 42 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 43 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 44 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -88.73 371.01 6.02 -82.71 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.39 Total: 34.84 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.70 Total: -36.41 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -1.32 Total: -83.32 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: 0.22 Total: -44.26 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -88.73 6.02 -82.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194089599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.795 kcal (2) G-P(sol) polarization free energy of solvation -88.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds