Wall clock time and date at job start Tue Mar 31 2020 14:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47387 * 2 1 4 4 C 1.50701 * 109.47442 * 180.02562 * 3 2 1 5 5 C 1.38124 * 120.03437 * 264.72401 * 4 3 2 6 6 C 1.38264 * 120.06897 * 179.77108 * 5 4 3 7 7 C 1.38314 * 120.14358 * 0.50338 * 6 5 4 8 8 C 1.38079 * 120.07321 * 359.75169 * 7 6 5 9 9 C 1.38871 * 120.03382 * 84.99895 * 4 3 2 10 10 N 1.39845 * 120.07316 * 359.95851 * 9 4 3 11 11 C 1.34779 * 119.99878 * 145.36424 * 10 9 4 12 12 O 1.21607 * 120.00238 * 4.41013 * 11 10 9 13 13 C 1.47506 * 120.00127 * 184.41398 * 11 10 9 14 14 C 1.39676 * 120.19446 * 359.97438 * 13 11 10 15 15 C 1.37829 * 119.91563 * 180.02562 * 14 13 11 16 16 C 1.38574 * 120.32642 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40147 * 0.02562 * 16 15 14 18 18 C 1.38838 * 120.07744 * 359.67540 * 17 16 15 19 19 O 1.35517 * 120.16475 * 180.29946 * 18 17 16 20 20 C 1.34811 * 117.00031 * 5.40193 * 19 18 17 21 21 H 1.08004 * 119.99873 * 354.95438 * 20 19 18 22 22 C 1.38695 * 119.99870 * 174.94845 * 20 19 18 23 23 N 1.31523 * 120.00178 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00066 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46900 * 89.99819 * 24 22 20 26 26 H 1.48498 * 109.46756 * 209.99726 * 24 22 20 27 27 H 1.48493 * 109.46879 * 329.99764 * 24 22 20 28 28 H 1.09000 * 109.47482 * 59.99845 * 1 2 3 29 29 H 1.09007 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47247 * 299.99434 * 1 2 3 31 31 H 1.09002 * 109.47196 * 120.00619 * 2 1 3 32 32 H 1.09007 * 109.46910 * 240.00196 * 2 1 3 33 33 H 1.09000 * 109.46936 * 300.00489 * 3 2 1 34 34 H 1.09003 * 109.46465 * 60.00087 * 3 2 1 35 35 H 1.08003 * 119.96592 * 0.02776 * 5 4 3 36 36 H 1.08002 * 119.93018 * 180.26310 * 6 5 4 37 37 H 1.08006 * 119.95738 * 179.76759 * 7 6 5 38 38 H 1.07999 * 120.03429 * 179.97438 * 8 7 6 39 39 H 0.96993 * 120.00557 * 325.36483 * 10 9 4 40 40 H 1.08003 * 120.04787 * 0.02934 * 14 13 11 41 41 H 1.08001 * 119.83458 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.79619 * 179.97438 * 16 15 14 43 43 H 1.08003 * 119.96041 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.5522 1.1898 6 6 5.6215 1.5476 1.1905 7 6 6.3163 1.4435 -0.0009 8 6 5.6307 1.3387 -1.1949 9 6 4.2416 1.3378 -1.1986 10 7 3.5441 1.2314 -2.4060 11 6 4.0400 1.7998 -3.5230 12 8 5.1314 2.3356 -3.4996 13 6 3.2589 1.7718 -4.7740 14 6 2.0051 1.1570 -4.8057 15 6 1.2803 1.1338 -5.9778 16 6 1.7895 1.7173 -7.1269 17 6 3.0274 2.3275 -7.1109 18 6 3.7690 2.3661 -5.9378 19 8 4.9820 2.9700 -5.9185 20 6 5.3640 3.6120 -7.0407 21 1 4.7503 3.5601 -7.9280 22 6 6.5448 4.3393 -7.0558 23 7 6.9178 4.9652 -8.1508 24 14 7.6064 4.4286 -5.5213 25 1 8.5849 3.3116 -5.5307 26 1 8.3333 5.7233 -5.4971 27 1 6.7449 4.3220 -4.3166 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8901 35 1 3.6992 1.6377 2.1215 36 1 6.1602 1.6293 2.1230 37 1 7.3964 1.4439 0.0028 38 1 6.1739 1.2579 -2.1248 39 1 2.7035 0.7487 -2.4397 40 1 1.6039 0.7005 -3.9129 41 1 0.3112 0.6577 -6.0009 42 1 1.2145 1.6938 -8.0408 43 1 3.4176 2.7797 -8.0108 44 1 7.7435 5.4742 -8.1612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194189336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:03 Heat of formation + Delta-G solvation = -16.582798 kcal Electronic energy + Delta-G solvation = -27223.543528 eV Core-core repulsion = 23492.301540 eV Total energy + Delta-G solvation = -3731.241988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53779 -39.34106 -37.92420 -36.61509 -35.34238 -34.21570 -32.51336 -31.10637 -31.05344 -29.30752 -29.06129 -26.46167 -25.38807 -23.88210 -22.53350 -22.19482 -21.35703 -20.72706 -20.06370 -18.20926 -17.95720 -17.07100 -16.51140 -15.84017 -15.53854 -14.99551 -14.75275 -14.50936 -14.39514 -14.16785 -14.01072 -13.89123 -13.73856 -13.44174 -13.37606 -12.97225 -12.49756 -12.43062 -12.33701 -12.21440 -12.01848 -11.50504 -11.46462 -11.36502 -11.27574 -10.93148 -10.91322 -10.84509 -10.77829 -10.11118 -10.02550 -9.66505 -9.14106 -8.94111 -8.62306 -8.50033 -7.89557 -7.54589 -6.52624 -4.17986 1.28604 1.49544 1.63379 2.11534 3.29217 3.32728 3.34926 3.41125 3.63265 3.92026 4.31046 4.43431 4.63432 4.64222 4.72373 4.88859 5.00097 5.03682 5.10109 5.23269 5.26297 5.29059 5.30589 5.52403 5.55192 5.58187 5.64787 5.68761 5.73055 5.82783 5.90379 5.95222 5.99042 6.10440 6.18058 6.29083 6.42146 6.49786 6.57316 6.65685 6.72495 6.77560 6.93242 7.07655 7.23682 7.40481 7.59796 7.75862 7.88656 8.66421 8.82262 9.43899 10.52113 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004638 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.416616 B = 6035.497905 C = 8298.817675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.143 4.143 7 C -0.106 4.106 8 C -0.121 4.121 9 C 0.164 3.836 10 N -0.681 5.681 11 C 0.559 3.441 12 O -0.497 6.497 13 C -0.230 4.230 14 C -0.040 4.040 15 C -0.219 4.219 16 C -0.048 4.048 17 C -0.225 4.225 18 C 0.203 3.797 19 O -0.164 6.164 20 C -0.397 4.397 21 H 0.109 0.891 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.897 3.103 25 H -0.273 1.273 26 H -0.286 1.286 27 H -0.235 1.235 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.404 0.596 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.139 0.861 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 -9.565 15.416 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.161 4.161 7 C -0.125 4.125 8 C -0.141 4.141 9 C 0.069 3.931 10 N -0.328 5.328 11 C 0.351 3.649 12 O -0.372 6.372 13 C -0.235 4.235 14 C -0.059 4.059 15 C -0.238 4.238 16 C -0.067 4.067 17 C -0.244 4.244 18 C 0.145 3.855 19 O -0.063 6.063 20 C -0.472 4.472 21 H 0.126 0.874 22 C -0.133 4.133 23 N -0.502 5.502 24 Si 0.721 3.279 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.158 1.158 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.241 0.759 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.157 0.843 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.560 -8.955 15.385 20.206 hybrid contribution 0.072 -0.062 0.255 0.272 sum -9.488 -9.017 15.640 20.395 Atomic orbital electron populations 1.21802 0.95545 1.01722 1.02037 1.21541 0.95747 0.96183 1.02325 1.20568 0.90836 0.97213 1.03168 1.19635 0.95493 1.04668 0.92247 1.20748 0.94080 1.00629 0.96627 1.21032 0.94195 1.03022 0.97900 1.21050 0.99858 0.99496 0.92062 1.21429 0.92854 1.00333 0.99529 1.17601 0.91338 0.99254 0.84873 1.43560 1.25995 1.55987 1.07209 1.18359 0.86083 0.77670 0.82798 1.90856 1.19893 1.42412 1.84022 1.18702 0.98049 1.14637 0.92078 1.20745 0.92182 0.95523 0.97414 1.20537 1.01255 1.08539 0.93507 1.20989 0.94352 0.93887 0.97463 1.21296 0.96725 1.07366 0.99011 1.18982 0.84722 0.90062 0.91771 1.83763 1.26897 1.57359 1.38313 1.20936 1.08332 1.28739 0.89159 0.87357 1.24500 0.96512 0.93903 0.98372 1.69635 1.23728 1.29665 1.27170 0.86246 0.80437 0.77158 0.84057 1.19865 1.21165 1.15762 0.92466 0.92650 0.92693 0.91665 0.92192 0.90996 0.90800 0.86198 0.86415 0.86062 0.84050 0.75926 0.86992 0.86860 0.86691 0.84302 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.00 5.84 -26.73 -0.16 -1.16 16 3 C -0.08 -0.80 4.75 -27.88 -0.13 -0.93 16 4 C -0.12 -1.49 5.15 -104.43 -0.54 -2.03 16 5 C -0.10 -1.19 9.67 -39.61 -0.38 -1.57 16 6 C -0.14 -1.71 10.04 -39.54 -0.40 -2.11 16 7 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 8 C -0.12 -2.03 8.70 -39.39 -0.34 -2.37 16 9 C 0.16 2.55 6.29 -83.72 -0.53 2.03 16 10 N -0.68 -10.60 4.72 -10.81 -0.05 -10.65 16 11 C 0.56 11.23 7.61 -12.48 -0.09 11.14 16 12 O -0.50 -12.05 12.44 -16.58 -0.21 -12.26 16 13 C -0.23 -4.56 5.89 -104.82 -0.62 -5.18 16 14 C -0.04 -0.62 9.53 -39.19 -0.37 -0.99 16 15 C -0.22 -3.27 10.02 -39.61 -0.40 -3.67 16 16 C -0.05 -0.80 10.03 -39.54 -0.40 -1.19 16 17 C -0.22 -4.62 9.16 -39.44 -0.36 -4.98 16 18 C 0.20 4.68 6.66 -38.59 -0.26 4.42 16 19 O -0.16 -4.41 6.66 -21.04 -0.14 -4.55 16 20 C -0.40 -11.17 9.95 30.90 0.31 -10.87 16 21 H 0.11 3.03 5.44 -52.48 -0.29 2.75 16 22 C 0.07 2.08 5.49 -17.52 -0.10 1.98 16 23 N -0.87 -24.94 13.96 55.48 0.77 -24.16 16 24 Si 0.90 22.88 28.62 -169.99 -4.86 18.01 16 25 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.23 -6.34 6.96 56.52 0.39 -5.95 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.52 7.29 -51.92 -0.38 0.14 16 33 H 0.07 0.76 7.43 -51.93 -0.39 0.38 16 34 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.14 2.71 6.19 -52.49 -0.33 2.39 16 39 H 0.40 4.99 5.08 -40.82 -0.21 4.78 16 40 H 0.11 1.30 6.41 -52.48 -0.34 0.97 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.14 2.96 5.64 -52.48 -0.30 2.67 16 44 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -31.96 365.01 -9.36 -41.32 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.58 Total: 6.85 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -4.79 Total: -20.06 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.72 Total: -34.81 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.35 Total: -16.81 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.86 Total: 18.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.96 -9.36 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194189336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.740 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds