Wall clock time and date at job start Tue Mar 31 2020 14:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47387 * 2 1 4 4 C 1.50701 * 109.47442 * 180.02562 * 3 2 1 5 5 C 1.38124 * 120.03437 * 264.72401 * 4 3 2 6 6 C 1.38264 * 120.06897 * 179.77108 * 5 4 3 7 7 C 1.38314 * 120.14358 * 0.50338 * 6 5 4 8 8 C 1.38079 * 120.07321 * 359.75169 * 7 6 5 9 9 C 1.38871 * 120.03382 * 84.99895 * 4 3 2 10 10 N 1.39845 * 120.07316 * 359.95851 * 9 4 3 11 11 C 1.34779 * 119.99878 * 145.36424 * 10 9 4 12 12 O 1.21607 * 120.00238 * 4.41013 * 11 10 9 13 13 C 1.47506 * 120.00127 * 184.41398 * 11 10 9 14 14 C 1.39676 * 120.19446 * 359.97438 * 13 11 10 15 15 C 1.37829 * 119.91563 * 180.02562 * 14 13 11 16 16 C 1.38574 * 120.32642 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40147 * 0.02562 * 16 15 14 18 18 C 1.38838 * 120.07744 * 359.67540 * 17 16 15 19 19 O 1.35517 * 120.16475 * 180.29946 * 18 17 16 20 20 C 1.34811 * 117.00031 * 5.40193 * 19 18 17 21 21 H 1.08004 * 119.99873 * 354.95438 * 20 19 18 22 22 C 1.38695 * 119.99870 * 174.94845 * 20 19 18 23 23 N 1.31523 * 120.00178 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00066 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46900 * 89.99819 * 24 22 20 26 26 H 1.48498 * 109.46756 * 209.99726 * 24 22 20 27 27 H 1.48493 * 109.46879 * 329.99764 * 24 22 20 28 28 H 1.09000 * 109.47482 * 59.99845 * 1 2 3 29 29 H 1.09007 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47247 * 299.99434 * 1 2 3 31 31 H 1.09002 * 109.47196 * 120.00619 * 2 1 3 32 32 H 1.09007 * 109.46910 * 240.00196 * 2 1 3 33 33 H 1.09000 * 109.46936 * 300.00489 * 3 2 1 34 34 H 1.09003 * 109.46465 * 60.00087 * 3 2 1 35 35 H 1.08003 * 119.96592 * 0.02776 * 5 4 3 36 36 H 1.08002 * 119.93018 * 180.26310 * 6 5 4 37 37 H 1.08006 * 119.95738 * 179.76759 * 7 6 5 38 38 H 1.07999 * 120.03429 * 179.97438 * 8 7 6 39 39 H 0.96993 * 120.00557 * 325.36483 * 10 9 4 40 40 H 1.08003 * 120.04787 * 0.02934 * 14 13 11 41 41 H 1.08001 * 119.83458 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.79619 * 179.97438 * 16 15 14 43 43 H 1.08003 * 119.96041 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.5522 1.1898 6 6 5.6215 1.5476 1.1905 7 6 6.3163 1.4435 -0.0009 8 6 5.6307 1.3387 -1.1949 9 6 4.2416 1.3378 -1.1986 10 7 3.5441 1.2314 -2.4060 11 6 4.0400 1.7998 -3.5230 12 8 5.1314 2.3356 -3.4996 13 6 3.2589 1.7718 -4.7740 14 6 2.0051 1.1570 -4.8057 15 6 1.2803 1.1338 -5.9778 16 6 1.7895 1.7173 -7.1269 17 6 3.0274 2.3275 -7.1109 18 6 3.7690 2.3661 -5.9378 19 8 4.9820 2.9700 -5.9185 20 6 5.3640 3.6120 -7.0407 21 1 4.7503 3.5601 -7.9280 22 6 6.5448 4.3393 -7.0558 23 7 6.9178 4.9652 -8.1508 24 14 7.6064 4.4286 -5.5213 25 1 8.5849 3.3116 -5.5307 26 1 8.3333 5.7233 -5.4971 27 1 6.7449 4.3220 -4.3166 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8901 35 1 3.6992 1.6377 2.1215 36 1 6.1602 1.6293 2.1230 37 1 7.3964 1.4439 0.0028 38 1 6.1739 1.2579 -2.1248 39 1 2.7035 0.7487 -2.4397 40 1 1.6039 0.7005 -3.9129 41 1 0.3112 0.6577 -6.0009 42 1 1.2145 1.6938 -8.0408 43 1 3.4176 2.7797 -8.0108 44 1 7.7435 5.4742 -8.1612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194189336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:02 Heat of formation + Delta-G solvation = -34.091686 kcal Electronic energy + Delta-G solvation = -27224.302770 eV Core-core repulsion = 23492.301540 eV Total energy + Delta-G solvation = -3732.001230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90597 -40.80562 -39.35785 -38.21002 -36.24103 -35.46201 -34.54951 -32.53202 -31.93814 -30.84879 -30.26958 -27.42783 -27.17394 -25.28127 -23.78644 -23.16961 -22.70316 -21.69135 -21.49947 -19.85065 -19.65554 -18.44297 -18.02519 -16.95886 -16.64878 -16.61135 -16.20536 -15.92040 -15.81685 -15.52261 -15.42573 -15.11689 -15.01151 -14.58654 -14.44582 -14.38231 -14.26575 -14.07241 -13.46438 -13.17195 -13.12415 -12.85584 -12.78441 -12.64433 -12.45318 -12.34990 -12.05471 -12.00749 -11.85638 -11.57272 -11.49127 -11.28275 -11.00409 -10.69803 -9.97419 -9.67982 -9.23740 -9.00709 -8.61258 -6.30000 -0.09910 0.40424 0.47029 0.61006 1.22067 1.26200 1.55328 1.90773 2.05340 2.26119 2.70820 2.85139 2.96192 3.12605 3.72938 3.80859 3.91515 3.95198 4.14770 4.22445 4.24322 4.29757 4.40819 4.43990 4.50231 4.56927 4.60723 4.70644 4.75475 4.84294 4.91188 5.00115 5.07531 5.11629 5.23580 5.29081 5.32170 5.39444 5.43178 5.50415 5.53611 5.58181 5.61816 5.63616 5.66579 5.80222 6.11084 6.12479 6.45687 6.75560 7.21694 7.54280 8.49031 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004638 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.416616 B = 6035.497905 C = 8298.817675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.079 4.079 4 C -0.110 4.110 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.153 4.153 9 C 0.135 3.865 10 N -0.658 5.658 11 C 0.552 3.448 12 O -0.548 6.548 13 C -0.235 4.235 14 C -0.031 4.031 15 C -0.186 4.186 16 C -0.038 4.038 17 C -0.249 4.249 18 C 0.165 3.835 19 O -0.209 6.209 20 C -0.403 4.403 21 H 0.094 0.906 22 C 0.029 3.971 23 N -0.909 5.909 24 Si 0.951 3.049 25 H -0.275 1.275 26 H -0.267 1.267 27 H -0.265 1.265 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.420 0.580 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.117 0.883 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 -11.744 18.759 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.151 4.151 7 C -0.139 4.139 8 C -0.174 4.174 9 C 0.040 3.960 10 N -0.305 5.305 11 C 0.344 3.656 12 O -0.426 6.426 13 C -0.240 4.240 14 C -0.049 4.049 15 C -0.204 4.204 16 C -0.056 4.056 17 C -0.268 4.268 18 C 0.111 3.889 19 O -0.113 6.113 20 C -0.479 4.479 21 H 0.112 0.888 22 C -0.172 4.172 23 N -0.549 5.549 24 Si 0.775 3.225 25 H -0.201 1.201 26 H -0.191 1.191 27 H -0.190 1.190 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.260 0.740 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.172 0.828 43 H 0.135 0.865 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.965 -11.187 18.766 25.930 hybrid contribution 0.986 0.321 -0.559 1.178 sum -12.980 -10.866 18.207 24.861 Atomic orbital electron populations 1.21789 0.94275 1.02352 1.02487 1.21514 0.96747 0.94792 1.02372 1.20656 0.88571 0.98582 1.03843 1.19985 0.97182 1.02784 0.91283 1.21239 0.94103 0.98823 0.97608 1.21430 0.94798 1.00794 0.98095 1.21236 1.00583 0.99925 0.92111 1.21319 0.93953 1.02990 0.99111 1.17807 0.91076 1.01443 0.85628 1.43211 1.26155 1.54914 1.06268 1.18584 0.85556 0.77446 0.83994 1.90853 1.22088 1.44744 1.84909 1.19129 0.99647 1.14177 0.91045 1.21318 0.89900 0.93759 0.99924 1.21242 1.02449 1.04973 0.91723 1.21485 0.92432 0.91688 1.00006 1.21347 0.98741 1.09129 0.97580 1.19726 0.84608 0.90527 0.93993 1.83759 1.29535 1.60380 1.37595 1.20905 1.08325 1.29092 0.89558 0.88839 1.25000 0.97595 0.94448 1.00109 1.69676 1.24878 1.32138 1.28186 0.85475 0.78789 0.77649 0.80582 1.20084 1.19129 1.18996 0.92259 0.91953 0.92074 0.91234 0.92669 0.91595 0.88897 0.82468 0.83130 0.85261 0.88036 0.74009 0.82100 0.81281 0.82843 0.86505 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.47 5.84 30.59 0.18 -1.29 16 3 C -0.08 -1.27 4.75 29.85 0.14 -1.13 16 4 C -0.11 -2.51 5.15 -19.74 -0.10 -2.61 16 5 C -0.10 -1.94 9.67 22.25 0.22 -1.73 16 6 C -0.13 -2.83 10.04 22.29 0.22 -2.60 16 7 C -0.12 -3.37 10.04 22.25 0.22 -3.14 16 8 C -0.15 -5.40 8.70 22.39 0.19 -5.20 16 9 C 0.13 4.14 6.29 38.18 0.24 4.38 16 10 N -0.66 -20.05 4.72 -306.37 -1.45 -21.50 16 11 C 0.55 22.88 7.61 86.69 0.66 23.54 16 12 O -0.55 -28.61 12.44 16.85 0.21 -28.40 16 13 C -0.24 -9.29 5.89 -19.99 -0.12 -9.41 16 14 C -0.03 -0.82 9.53 22.52 0.21 -0.61 16 15 C -0.19 -4.42 10.02 22.25 0.22 -4.20 16 16 C -0.04 -1.12 10.03 22.30 0.22 -0.90 16 17 C -0.25 -10.43 9.16 22.36 0.20 -10.22 16 18 C 0.16 7.95 6.66 22.91 0.15 8.10 16 19 O -0.21 -12.17 6.66 0.91 0.01 -12.16 16 20 C -0.40 -24.61 9.95 67.93 0.68 -23.94 16 21 H 0.09 5.75 5.44 -2.91 -0.02 5.73 16 22 C 0.03 1.78 5.49 84.85 0.47 2.24 16 23 N -0.91 -55.76 13.96 21.62 0.30 -55.45 16 24 Si 0.95 51.24 28.62 68.60 1.96 53.20 16 25 H -0.28 -14.59 7.11 99.48 0.71 -13.89 16 26 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.27 -15.49 6.96 99.48 0.69 -14.80 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.74 7.29 -2.38 -0.02 0.73 16 33 H 0.07 1.16 7.43 -2.39 -0.02 1.14 16 34 H 0.09 1.18 8.05 -2.39 -0.02 1.16 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.10 4.35 6.19 -2.91 -0.02 4.33 16 39 H 0.42 9.25 5.08 -92.71 -0.47 8.78 16 40 H 0.16 2.73 6.41 -2.91 -0.02 2.71 16 41 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.12 5.36 5.64 -2.91 -0.02 5.35 16 44 H 0.29 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -80.49 365.01 6.31 -74.17 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.55 Total: 19.59 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.73 Total: -29.45 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.15 Total: -76.96 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: 0.22 Total: -40.57 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 1.96 Total: 53.20 kcal Total: -80.49 6.31 -74.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194189336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.083 kcal (2) G-P(sol) polarization free energy of solvation -80.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds