Wall clock time and date at job start Tue Mar 31 2020 13:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38150 * 120.02673 * 2 1 4 4 C 1.38267 * 120.05195 * 179.70873 * 3 2 1 5 5 C 1.38264 * 120.11380 * 0.29576 * 4 3 2 6 6 C 1.38143 * 120.05711 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.02601 * 180.02562 * 6 5 4 8 8 C 1.38727 * 119.94564 * 0.02562 * 6 5 4 9 9 O 1.35894 * 120.05851 * 180.02562 * 8 6 5 10 10 C 1.42895 * 117.00296 * 89.99956 * 9 8 6 11 11 C 1.50694 * 109.47297 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00268 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00001 * 179.97438 * 11 10 9 14 14 C 1.37138 * 120.00056 * 354.95078 * 13 11 10 15 15 H 1.08001 * 120.00453 * 344.74414 * 14 13 11 16 16 C 1.38894 * 120.00124 * 164.74000 * 14 13 11 17 17 N 1.31422 * 119.99715 * 343.62715 * 16 14 13 18 18 Si 1.86798 * 120.00167 * 163.62562 * 16 14 13 19 19 H 1.48504 * 109.46945 * 89.99952 * 18 16 14 20 20 H 1.48501 * 109.47202 * 210.00282 * 18 16 14 21 21 H 1.48503 * 109.47202 * 330.00165 * 18 16 14 22 22 C 1.39788 * 120.00214 * 174.95189 * 13 11 10 23 23 C 1.38961 * 120.07659 * 101.20844 * 22 13 11 24 24 C 1.38086 * 119.92132 * 179.79586 * 23 22 13 25 25 C 1.38311 * 120.07728 * 0.45910 * 24 23 22 26 26 C 1.38312 * 120.15407 * 359.79283 * 25 24 23 27 27 C 1.38077 * 120.07732 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47607 * 89.99622 * 1 2 3 29 29 H 1.09004 * 109.46824 * 210.00037 * 1 2 3 30 30 H 1.09001 * 109.47317 * 329.99290 * 1 2 3 31 31 H 1.07995 * 119.97199 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.94080 * 180.28003 * 4 3 2 33 33 H 1.08001 * 119.96976 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46889 * 90.00515 * 7 6 5 35 35 H 1.09010 * 109.47070 * 210.00271 * 7 6 5 36 36 H 1.08998 * 109.47687 * 330.00435 * 7 6 5 37 37 H 1.09004 * 109.47000 * 299.99787 * 10 9 8 38 38 H 1.09001 * 109.47243 * 59.99449 * 10 9 8 39 39 H 0.97006 * 119.99810 * 185.01824 * 17 16 14 40 40 H 1.07997 * 120.03911 * 359.97438 * 23 22 13 41 41 H 1.07996 * 119.96252 * 180.25349 * 24 23 22 42 42 H 1.07995 * 119.92382 * 179.76771 * 25 24 23 43 43 H 1.07995 * 119.95864 * 179.97438 * 26 25 24 44 44 H 1.08007 * 120.04031 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5809 1.1967 0.0061 5 6 4.2751 0.0010 0.0060 6 6 3.5886 -1.1977 0.0004 7 6 4.3459 -2.5006 0.0009 8 6 2.2013 -1.2012 -0.0057 9 8 1.5236 -2.3790 -0.0107 10 6 1.1944 -2.9436 1.2600 11 6 0.4507 -4.2384 1.0570 12 8 0.2244 -4.6383 -0.0654 13 7 0.0371 -4.9522 2.1228 14 6 0.3818 -4.5554 3.3895 15 1 1.1723 -3.8336 3.5330 16 6 -0.2857 -5.0817 4.4879 17 7 -1.4359 -5.6963 4.3253 18 14 0.4513 -4.9159 6.1963 19 1 -0.0271 -3.6568 6.8218 20 1 0.0345 -6.0722 7.0297 21 1 1.9327 -4.8869 6.0957 22 6 -0.7432 -6.0971 1.9372 23 6 -0.1615 -7.3566 2.0157 24 6 -0.9362 -8.4855 1.8360 25 6 -2.2877 -8.3634 1.5686 26 6 -2.8690 -7.1111 1.4846 27 6 -2.1013 -5.9782 1.6680 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6583 2.1313 -0.0004 32 1 4.1195 2.1328 0.0106 33 1 5.3551 0.0042 0.0112 34 1 4.5239 -2.8169 1.0287 35 1 3.7613 -3.2609 -0.5173 36 1 5.3002 -2.3664 -0.5084 37 1 2.1094 -3.1346 1.8207 38 1 0.5667 -2.2468 1.8156 39 1 -1.9373 -5.9996 5.0984 40 1 0.8946 -7.4526 2.2199 41 1 -0.4856 -9.4648 1.9009 42 1 -2.8905 -9.2478 1.4248 43 1 -3.9245 -7.0194 1.2753 44 1 -2.5557 -5.0006 1.6018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194667317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:31 Heat of formation + Delta-G solvation = -10.854933 kcal Electronic energy + Delta-G solvation = -27423.247377 eV Core-core repulsion = 23692.253768 eV Total energy + Delta-G solvation = -3730.993609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11862 -39.29405 -37.52223 -36.51823 -34.74713 -33.47700 -31.75069 -31.06396 -29.89785 -29.53022 -27.71814 -26.54305 -26.16851 -24.98924 -21.98197 -21.54397 -21.35207 -20.77355 -19.36547 -17.98119 -17.42171 -16.34394 -16.16753 -15.54714 -15.28350 -14.82427 -14.76690 -14.56500 -14.21745 -13.85452 -13.78329 -13.45871 -13.01813 -12.98109 -12.89602 -12.56978 -12.47730 -12.33135 -12.27218 -11.77602 -11.64991 -11.54631 -11.43993 -11.21546 -11.11161 -11.04919 -10.96703 -10.57577 -10.39030 -10.30546 -9.50973 -9.46630 -8.61152 -8.51765 -8.36587 -8.19060 -7.88079 -7.59761 -6.32216 -4.11172 1.29713 1.39649 2.44181 2.50060 3.01898 3.13400 3.15429 3.45572 3.64199 3.89723 4.08771 4.77871 4.82220 4.90091 4.91046 5.00225 5.00702 5.29965 5.47285 5.60494 5.63707 5.73577 5.76550 5.78616 5.81456 5.84177 5.88625 5.89517 5.92673 5.94780 6.02418 6.24640 6.40248 6.40846 6.49928 6.53840 6.54987 6.70676 6.78300 6.88364 7.03168 7.21531 7.31745 7.44222 7.56252 7.73239 7.86891 7.93806 8.37023 8.91132 9.25736 9.69580 10.52345 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003903 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.380360 B = 7172.067465 C = 7969.646233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.118 4.118 6 C -0.098 4.098 7 C -0.116 4.116 8 C 0.101 3.899 9 O -0.312 6.312 10 C 0.073 3.927 11 C 0.468 3.532 12 O -0.574 6.574 13 N -0.411 5.411 14 C -0.360 4.360 15 H 0.101 0.899 16 C 0.048 3.952 17 N -0.843 5.843 18 Si 0.919 3.081 19 H -0.276 1.276 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.240 3.760 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.145 4.145 26 C -0.121 4.121 27 C -0.066 4.066 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.273 0.727 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 7.529 -2.923 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.099 4.099 7 C -0.172 4.172 8 C 0.057 3.943 9 O -0.228 6.228 10 C -0.004 4.004 11 C 0.256 3.744 12 O -0.457 6.457 13 N -0.129 5.129 14 C -0.486 4.486 15 H 0.119 0.881 16 C -0.160 4.160 17 N -0.478 5.478 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.205 1.205 21 H -0.193 1.193 22 C 0.150 3.850 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.163 4.163 26 C -0.140 4.140 27 C -0.086 4.086 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.155 7.061 -3.499 9.417 hybrid contribution 0.343 0.280 1.512 1.575 sum 5.497 7.341 -1.987 9.384 Atomic orbital electron populations 1.20723 0.90599 1.02891 1.02700 1.20294 0.96896 0.92490 1.00123 1.20886 0.94137 0.96974 1.01603 1.21067 0.94219 0.97840 1.01117 1.20884 0.99578 0.91525 1.01643 1.20277 0.93151 0.96214 1.00218 1.20742 0.99411 0.94532 1.02548 1.18481 0.89466 0.85515 1.00828 1.86057 1.74240 1.33938 1.28547 1.22257 0.99644 0.94663 0.83844 1.19598 0.84473 0.85691 0.84605 1.90617 1.60662 1.71115 1.23317 1.41204 1.45546 1.20413 1.05770 1.19555 1.19912 1.28543 0.80575 0.88138 1.25254 0.94903 0.95837 1.00047 1.69936 1.10746 1.35742 1.31374 0.86055 0.79639 0.78138 0.81711 1.20168 1.20509 1.19276 1.17037 0.89584 0.85601 0.92770 1.20985 0.99185 0.92124 1.01917 1.20662 0.94126 0.97127 1.02249 1.20746 0.94950 0.96594 1.04006 1.20683 0.98513 0.92570 1.02259 1.20802 0.92823 0.97637 0.97307 0.90923 0.90878 0.91742 0.85946 0.86124 0.85968 0.91198 0.90347 0.91685 0.91030 0.90486 0.91551 0.87482 0.87574 0.87732 0.87540 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.79 36.00 0.35 -1.21 16 2 C -0.10 -1.45 5.89 -104.47 -0.62 -2.07 16 3 C -0.12 -1.46 9.70 -39.60 -0.38 -1.84 16 4 C -0.12 -1.42 10.04 -39.56 -0.40 -1.82 16 5 C -0.12 -1.45 9.70 -39.61 -0.38 -1.84 16 6 C -0.10 -1.45 5.89 -104.48 -0.62 -2.06 16 7 C -0.12 -1.58 9.79 36.01 0.35 -1.22 16 8 C 0.10 1.70 5.67 -39.21 -0.22 1.48 16 9 O -0.31 -6.20 7.86 -39.32 -0.31 -6.51 16 10 C 0.07 1.47 4.71 36.00 0.17 1.64 16 11 C 0.47 11.36 7.66 -10.99 -0.08 11.28 16 12 O -0.57 -15.62 16.48 -14.36 -0.24 -15.86 16 13 N -0.41 -10.21 2.66 -58.98 -0.16 -10.37 16 14 C -0.36 -8.73 9.19 -14.93 -0.14 -8.87 16 15 H 0.10 2.26 6.46 -52.49 -0.34 1.92 16 16 C 0.05 1.16 5.24 -17.48 -0.09 1.07 16 17 N -0.84 -21.22 10.34 55.49 0.57 -20.65 16 18 Si 0.92 18.81 29.59 -169.99 -5.03 13.78 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 C 0.24 5.94 2.29 -83.69 -0.19 5.75 16 23 C -0.12 -2.83 9.95 -39.37 -0.39 -3.22 16 24 C -0.12 -2.49 10.04 -39.61 -0.40 -2.88 16 25 C -0.14 -2.80 10.04 -39.53 -0.40 -3.20 16 26 C -0.12 -2.50 10.04 -39.61 -0.40 -2.89 16 27 C -0.07 -1.57 8.66 -39.37 -0.34 -1.91 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.16 6.30 -51.93 -0.33 0.84 16 30 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.23 7.53 -51.92 -0.39 0.84 16 36 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.07 1.35 7.52 -51.93 -0.39 0.96 16 38 H 0.08 1.49 7.23 -51.93 -0.38 1.11 16 39 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 40 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -29.74 372.80 -9.74 -39.48 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.03 Total: 8.32 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -4.17 Total: -13.83 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.42 Total: -31.02 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.55 Total: -22.36 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.74 -9.74 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194667317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.626 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds