Wall clock time and date at job start Tue Mar 31 2020 13:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38150 * 120.02673 * 2 1 4 4 C 1.38267 * 120.05195 * 179.70873 * 3 2 1 5 5 C 1.38264 * 120.11380 * 0.29576 * 4 3 2 6 6 C 1.38143 * 120.05711 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.02601 * 180.02562 * 6 5 4 8 8 C 1.38727 * 119.94564 * 0.02562 * 6 5 4 9 9 O 1.35894 * 120.05851 * 180.02562 * 8 6 5 10 10 C 1.42895 * 117.00296 * 89.99956 * 9 8 6 11 11 C 1.50694 * 109.47297 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00268 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00001 * 179.97438 * 11 10 9 14 14 C 1.37138 * 120.00056 * 354.95078 * 13 11 10 15 15 H 1.08001 * 120.00453 * 344.74414 * 14 13 11 16 16 C 1.38894 * 120.00124 * 164.74000 * 14 13 11 17 17 N 1.31422 * 119.99715 * 343.62715 * 16 14 13 18 18 Si 1.86798 * 120.00167 * 163.62562 * 16 14 13 19 19 H 1.48504 * 109.46945 * 89.99952 * 18 16 14 20 20 H 1.48501 * 109.47202 * 210.00282 * 18 16 14 21 21 H 1.48503 * 109.47202 * 330.00165 * 18 16 14 22 22 C 1.39788 * 120.00214 * 174.95189 * 13 11 10 23 23 C 1.38961 * 120.07659 * 101.20844 * 22 13 11 24 24 C 1.38086 * 119.92132 * 179.79586 * 23 22 13 25 25 C 1.38311 * 120.07728 * 0.45910 * 24 23 22 26 26 C 1.38312 * 120.15407 * 359.79283 * 25 24 23 27 27 C 1.38077 * 120.07732 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47607 * 89.99622 * 1 2 3 29 29 H 1.09004 * 109.46824 * 210.00037 * 1 2 3 30 30 H 1.09001 * 109.47317 * 329.99290 * 1 2 3 31 31 H 1.07995 * 119.97199 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.94080 * 180.28003 * 4 3 2 33 33 H 1.08001 * 119.96976 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46889 * 90.00515 * 7 6 5 35 35 H 1.09010 * 109.47070 * 210.00271 * 7 6 5 36 36 H 1.08998 * 109.47687 * 330.00435 * 7 6 5 37 37 H 1.09004 * 109.47000 * 299.99787 * 10 9 8 38 38 H 1.09001 * 109.47243 * 59.99449 * 10 9 8 39 39 H 0.97006 * 119.99810 * 185.01824 * 17 16 14 40 40 H 1.07997 * 120.03911 * 359.97438 * 23 22 13 41 41 H 1.07996 * 119.96252 * 180.25349 * 24 23 22 42 42 H 1.07995 * 119.92382 * 179.76771 * 25 24 23 43 43 H 1.07995 * 119.95864 * 179.97438 * 26 25 24 44 44 H 1.08007 * 120.04031 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5809 1.1967 0.0061 5 6 4.2751 0.0010 0.0060 6 6 3.5886 -1.1977 0.0004 7 6 4.3459 -2.5006 0.0009 8 6 2.2013 -1.2012 -0.0057 9 8 1.5236 -2.3790 -0.0107 10 6 1.1944 -2.9436 1.2600 11 6 0.4507 -4.2384 1.0570 12 8 0.2244 -4.6383 -0.0654 13 7 0.0371 -4.9522 2.1228 14 6 0.3818 -4.5554 3.3895 15 1 1.1723 -3.8336 3.5330 16 6 -0.2857 -5.0817 4.4879 17 7 -1.4359 -5.6963 4.3253 18 14 0.4513 -4.9159 6.1963 19 1 -0.0271 -3.6568 6.8218 20 1 0.0345 -6.0722 7.0297 21 1 1.9327 -4.8869 6.0957 22 6 -0.7432 -6.0971 1.9372 23 6 -0.1615 -7.3566 2.0157 24 6 -0.9362 -8.4855 1.8360 25 6 -2.2877 -8.3634 1.5686 26 6 -2.8690 -7.1111 1.4846 27 6 -2.1013 -5.9782 1.6680 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6583 2.1313 -0.0004 32 1 4.1195 2.1328 0.0106 33 1 5.3551 0.0042 0.0112 34 1 4.5239 -2.8169 1.0287 35 1 3.7613 -3.2609 -0.5173 36 1 5.3002 -2.3664 -0.5084 37 1 2.1094 -3.1346 1.8207 38 1 0.5667 -2.2468 1.8156 39 1 -1.9373 -5.9996 5.0984 40 1 0.8946 -7.4526 2.2199 41 1 -0.4856 -9.4648 1.9009 42 1 -2.8905 -9.2478 1.4248 43 1 -3.9245 -7.0194 1.2753 44 1 -2.5557 -5.0006 1.6018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194667317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:30 Heat of formation + Delta-G solvation = -23.803335 kcal Electronic energy + Delta-G solvation = -27423.808862 eV Core-core repulsion = 23692.253768 eV Total energy + Delta-G solvation = -3731.555094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49906 -40.88897 -39.11803 -37.95064 -36.61553 -34.53454 -33.63892 -32.18111 -31.58753 -31.16838 -29.19168 -27.55482 -27.50658 -26.84597 -23.51432 -23.23185 -22.61329 -21.83330 -21.21740 -19.68690 -18.83281 -17.81124 -17.63417 -17.24318 -16.67967 -16.43522 -16.28218 -16.17504 -15.69754 -15.38441 -14.94508 -14.92129 -14.52111 -14.19617 -14.11756 -13.94643 -13.89118 -13.86315 -13.60767 -13.38737 -13.24155 -12.87619 -12.87157 -12.75639 -12.46421 -12.27135 -12.25185 -12.12305 -12.07218 -11.99837 -11.28637 -10.87236 -10.52084 -10.05590 -9.59044 -9.53391 -9.46852 -9.35069 -8.15212 -6.02447 0.20304 0.37927 0.74775 0.79895 1.35751 1.44720 1.55044 1.79572 2.06707 2.34041 2.76061 3.03865 3.22013 3.30416 3.81371 3.89059 4.06508 4.09891 4.17869 4.20612 4.26511 4.27662 4.37877 4.38907 4.46764 4.55824 4.61142 4.69514 4.73290 4.73781 4.85602 4.88382 4.91198 5.07031 5.15618 5.31329 5.32873 5.34619 5.51682 5.52196 5.62104 5.64287 5.76113 5.79156 5.88390 5.98701 6.21333 6.49057 6.62630 7.02347 7.39208 7.82725 8.67267 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003903 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.380360 B = 7172.067465 C = 7969.646233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C -0.116 4.116 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.112 4.112 8 C 0.057 3.943 9 O -0.333 6.333 10 C 0.091 3.909 11 C 0.452 3.548 12 O -0.616 6.616 13 N -0.415 5.415 14 C -0.379 4.379 15 H 0.111 0.889 16 C 0.010 3.990 17 N -0.864 5.864 18 Si 0.985 3.015 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.261 1.261 22 C 0.211 3.789 23 C -0.150 4.150 24 C -0.119 4.119 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.095 4.095 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.272 0.728 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 8.551 -2.008 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.134 4.134 4 C -0.130 4.130 5 C -0.134 4.134 6 C -0.114 4.114 7 C -0.169 4.169 8 C 0.014 3.986 9 O -0.250 6.250 10 C 0.014 3.986 11 C 0.242 3.758 12 O -0.503 6.503 13 N -0.132 5.132 14 C -0.504 4.504 15 H 0.129 0.871 16 C -0.196 4.196 17 N -0.499 5.499 18 Si 0.808 3.192 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.185 1.185 22 C 0.121 3.879 23 C -0.170 4.170 24 C -0.138 4.138 25 C -0.157 4.157 26 C -0.139 4.139 27 C -0.114 4.114 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.170 0.830 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.160 0.840 42 H 0.167 0.833 43 H 0.154 0.846 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.310 8.093 -2.578 10.581 hybrid contribution -0.032 -0.010 1.181 1.181 sum 6.277 8.083 -1.398 10.329 Atomic orbital electron populations 1.20703 0.90728 1.02619 1.02640 1.20489 0.97180 0.92962 1.00793 1.21253 0.94950 0.96905 1.00319 1.21559 0.93950 0.99089 0.98444 1.21264 1.01148 0.90709 1.00258 1.20487 0.92497 0.97644 1.00724 1.20713 1.00068 0.93542 1.02574 1.18900 0.90589 0.84969 1.04181 1.86046 1.75053 1.35767 1.28092 1.21951 0.99279 0.92694 0.84673 1.20300 0.84668 0.86793 0.84037 1.90552 1.62594 1.72431 1.24722 1.41460 1.45018 1.20622 1.06136 1.19950 1.20520 1.29241 0.80717 0.87115 1.26079 0.94993 0.95256 1.03308 1.70099 1.11611 1.36059 1.32091 0.85047 0.79108 0.78005 0.77016 1.19431 1.20755 1.18505 1.17382 0.90205 0.86179 0.94128 1.21150 0.99412 0.92778 1.03616 1.21106 0.94570 0.97666 1.00416 1.21233 0.94951 0.97520 1.01953 1.21081 0.99811 0.92214 1.00808 1.20832 0.93063 0.97971 0.99578 0.90930 0.93964 0.89070 0.83022 0.82225 0.82915 0.91034 0.93520 0.88885 0.90230 0.90331 0.91743 0.88169 0.84020 0.83269 0.84569 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 9.79 71.23 0.70 -2.47 16 2 C -0.11 -3.38 5.89 -19.77 -0.12 -3.49 16 3 C -0.12 -2.57 9.70 22.26 0.22 -2.36 16 4 C -0.11 -2.15 10.04 22.28 0.22 -1.93 16 5 C -0.12 -2.52 9.70 22.25 0.22 -2.31 16 6 C -0.11 -3.30 5.89 -19.77 -0.12 -3.42 16 7 C -0.11 -3.11 9.79 71.24 0.70 -2.41 16 8 C 0.06 1.98 5.67 22.51 0.13 2.11 16 9 O -0.33 -14.22 7.86 -73.33 -0.58 -14.80 16 10 C 0.09 3.94 4.71 71.23 0.34 4.28 16 11 C 0.45 23.59 7.66 87.65 0.67 24.27 16 12 O -0.62 -36.18 16.48 15.99 0.26 -35.92 16 13 N -0.42 -21.84 2.66 -458.89 -1.22 -23.06 16 14 C -0.38 -19.05 9.19 84.02 0.77 -18.28 16 15 H 0.11 5.15 6.46 -2.91 -0.02 5.13 16 16 C 0.01 0.48 5.24 84.91 0.44 0.92 16 17 N -0.86 -44.38 10.34 21.65 0.22 -44.16 16 18 Si 0.99 38.62 29.59 68.60 2.03 40.65 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 20 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 C 0.21 10.91 2.29 38.22 0.09 11.00 16 23 C -0.15 -7.12 9.95 22.41 0.22 -6.90 16 24 C -0.12 -4.68 10.04 22.25 0.22 -4.46 16 25 C -0.14 -5.07 10.04 22.30 0.22 -4.85 16 26 C -0.12 -4.91 10.04 22.25 0.22 -4.68 16 27 C -0.09 -4.68 8.66 22.40 0.19 -4.49 16 28 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.45 6.30 -2.38 -0.02 1.43 16 30 H 0.09 2.02 8.09 -2.39 -0.02 2.01 16 31 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.56 7.53 -2.38 -0.02 1.55 16 36 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 37 H 0.08 3.21 7.52 -2.38 -0.02 3.19 16 38 H 0.08 3.28 7.23 -2.39 -0.02 3.27 16 39 H 0.27 13.36 8.32 -92.70 -0.77 12.59 16 40 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.08 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -69.27 372.80 7.06 -62.21 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 1.00 Total: 34.53 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 5.34 Total: -19.46 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.00 Total: -67.22 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.31 Total: -50.71 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -69.27 7.06 -62.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194667317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.403 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds