Wall clock time and date at job start Tue Mar 31 2020 14:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47307 * 2 1 4 4 C 1.53005 * 109.47343 * 240.00125 * 2 1 3 5 5 C 1.52994 * 109.47429 * 119.99941 * 2 1 3 6 6 C 1.53004 * 109.47163 * 59.99669 * 5 2 1 7 7 S 1.81394 * 109.47225 * 179.97438 * 6 5 2 8 8 O 1.42103 * 110.54018 * 68.38457 * 7 6 5 9 9 O 1.42098 * 110.54765 * 291.62603 * 7 6 5 10 10 N 1.65603 * 104.44769 * 180.02562 * 7 6 5 11 11 C 1.46495 * 120.00444 * 275.79346 * 10 7 6 12 12 C 1.50698 * 109.47348 * 265.00143 * 11 10 7 13 13 H 1.07993 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99991 * 179.97438 * 12 11 10 15 15 N 1.31506 * 119.99798 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99790 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47101 * 90.00087 * 16 14 12 18 18 H 1.48499 * 109.47103 * 209.99699 * 16 14 12 19 19 H 1.48500 * 109.47590 * 329.99809 * 16 14 12 20 20 C 1.39674 * 119.99849 * 95.79811 * 10 7 6 21 21 C 1.38918 * 120.07012 * 301.08605 * 20 10 7 22 22 C 1.38109 * 119.92227 * 179.97438 * 21 20 10 23 23 C 1.38286 * 120.07248 * 359.97438 * 22 21 20 24 24 C 1.38281 * 120.15600 * 0.02562 * 23 22 21 25 25 C 1.38108 * 120.07327 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.46864 * 300.00487 * 1 2 3 27 27 H 1.09003 * 109.46840 * 60.00287 * 1 2 3 28 28 H 1.08996 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47543 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46908 * 300.00194 * 3 2 1 31 31 H 1.09002 * 109.47447 * 59.99546 * 3 2 1 32 32 H 1.09000 * 109.46576 * 299.99892 * 4 2 1 33 33 H 1.09005 * 109.47062 * 59.99690 * 4 2 1 34 34 H 1.09003 * 109.47294 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47010 * 300.00495 * 5 2 1 36 36 H 1.09000 * 109.47824 * 179.97438 * 5 2 1 37 37 H 1.09002 * 109.46483 * 60.00503 * 6 5 2 38 38 H 1.08995 * 109.47413 * 300.01026 * 6 5 2 39 39 H 1.09000 * 109.46841 * 24.99969 * 11 10 7 40 40 H 1.08999 * 109.47323 * 144.99767 * 11 10 7 41 41 H 0.97004 * 120.00212 * 179.97438 * 15 14 12 42 42 H 1.07994 * 120.03987 * 359.69762 * 21 20 10 43 43 H 1.07995 * 119.96067 * 179.97438 * 22 21 20 44 44 H 1.08005 * 119.92203 * 180.02562 * 23 22 21 45 45 H 1.07997 * 119.97063 * 180.02562 * 24 23 22 46 46 H 1.07992 * 120.04103 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1637 1.2493 7 16 2.1353 -3.0190 2.7299 8 8 1.5231 -2.4886 3.8975 9 8 3.5427 -3.2026 2.6595 10 7 1.5176 -4.5504 2.6041 11 6 0.1574 -4.8321 3.0695 12 6 0.2079 -5.3561 4.4815 13 1 1.1582 -5.4685 4.9820 14 6 -0.9592 -5.6921 5.1344 15 7 -0.9150 -6.1490 6.3667 16 14 -2.6028 -5.4984 4.2682 17 1 -2.9351 -6.7551 3.5502 18 1 -3.6591 -5.2069 5.2705 19 1 -2.5210 -4.3793 3.2955 20 6 2.2935 -5.5734 2.0543 21 6 2.7801 -5.4582 0.7583 22 6 3.5474 -6.4714 0.2179 23 6 3.8319 -7.5993 0.9657 24 6 3.3492 -7.7172 2.2561 25 6 2.5812 -6.7078 2.8027 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1301 -0.7208 -1.2495 35 1 1.6766 -0.2074 2.1392 36 1 3.1300 -0.7216 1.2490 37 1 1.8934 -2.6775 0.3593 38 1 0.4400 -2.1638 1.2492 39 1 -0.4327 -3.9160 3.0428 40 1 -0.3012 -5.5787 2.4210 41 1 -1.7361 -6.3850 6.8262 42 1 2.5549 -4.5794 0.1724 43 1 3.9257 -6.3827 -0.7897 44 1 4.4326 -8.3900 0.5408 45 1 3.5735 -8.5992 2.8376 46 1 2.2041 -6.8007 3.8103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232502986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:47 Heat of formation + Delta-G solvation = -54.309028 kcal Electronic energy + Delta-G solvation = -26787.515793 eV Core-core repulsion = 23190.081824 eV Total energy + Delta-G solvation = -3597.433968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.03586 -38.24231 -36.62027 -35.58191 -35.31873 -32.52346 -31.34457 -30.52694 -29.56111 -27.50645 -27.46575 -27.20677 -24.26667 -22.55174 -22.17231 -21.45510 -18.92595 -18.62238 -17.51404 -17.08441 -16.34962 -16.12185 -15.69135 -15.34585 -14.79811 -14.61279 -14.54406 -14.08623 -13.95066 -13.86785 -13.48096 -13.01148 -12.87468 -12.60784 -12.51194 -12.20436 -12.14933 -12.12887 -11.89477 -11.83628 -11.56619 -11.42003 -11.38670 -11.25155 -11.21157 -11.02880 -10.91324 -10.81696 -10.75855 -10.54038 -10.28402 -10.14259 -9.51480 -8.89730 -8.63474 -8.54040 -7.79729 -6.12326 -4.11779 0.61192 1.72029 1.82560 3.07585 3.22500 3.28030 3.31783 4.14407 4.21151 4.33489 4.39286 4.47140 4.57824 4.64256 4.96498 5.01947 5.16379 5.18865 5.25979 5.29841 5.37564 5.42122 5.43985 5.44357 5.58567 5.65255 5.68630 5.74140 5.75359 5.77428 5.82703 5.88134 6.00268 6.04818 6.17843 6.19870 6.23934 6.43170 6.56324 6.71900 6.81068 6.93252 7.10214 7.17381 7.48858 7.64633 8.42887 8.92020 9.45475 11.00715 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.005583 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.582411 B = 5013.792056 C = 6764.264497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.147 4.147 5 C -0.100 4.100 6 C -0.644 4.644 7 S 2.597 3.403 8 O -0.927 6.927 9 O -0.957 6.957 10 N -0.936 5.936 11 C 0.223 3.777 12 C -0.529 4.529 13 H 0.083 0.917 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.869 3.131 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.266 1.266 20 C 0.179 3.821 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.106 4.106 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 7.458 -16.534 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 C -0.201 4.201 4 C -0.204 4.204 5 C -0.139 4.139 6 C -0.772 4.772 7 S 2.691 3.309 8 O -0.917 6.917 9 O -0.947 6.947 10 N -0.765 5.765 11 C 0.101 3.899 12 C -0.568 4.568 13 H 0.101 0.899 14 C -0.127 4.127 15 N -0.529 5.529 16 Si 0.696 3.304 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.190 1.190 20 C 0.085 3.915 21 C -0.170 4.170 22 C -0.128 4.128 23 C -0.157 4.157 24 C -0.127 4.127 25 C -0.127 4.127 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.773 7.772 -15.640 18.395 hybrid contribution -1.481 -0.017 -0.917 1.742 sum 4.292 7.755 -16.557 18.781 Atomic orbital electron populations 1.21976 0.94352 1.02302 1.01921 1.20454 0.95973 0.95232 0.94563 1.21902 1.01153 0.95111 1.01979 1.21967 1.01170 1.00551 0.96698 1.21384 1.01230 0.91506 0.99773 1.30954 1.13468 1.09094 1.23641 1.05558 0.74542 0.73976 0.76795 1.93661 1.77615 1.78385 1.42061 1.93566 1.29081 1.84572 1.87465 1.55321 1.24921 1.22423 1.73859 1.19636 0.76240 0.97296 0.96679 1.21291 0.95647 1.43442 0.96399 0.89940 1.24834 0.98702 0.94481 0.94689 1.69877 1.28207 1.43558 1.11235 0.86967 0.84469 0.79019 0.79963 1.19954 1.20773 1.19027 1.17322 0.92996 0.90287 0.90932 1.21104 1.02043 1.00110 0.93746 1.20777 0.98671 0.93822 0.99495 1.21042 1.01539 0.98078 0.95066 1.21098 0.97599 0.98675 0.95377 1.21730 0.96421 0.93188 1.01354 0.92260 0.92602 0.92114 0.92437 0.92474 0.92351 0.92214 0.92593 0.92405 0.90239 0.90416 0.85153 0.84728 0.94513 0.94819 0.92442 0.86972 0.86313 0.86527 0.86019 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.12 37.16 0.30 -1.12 16 2 C -0.06 -0.59 0.80 -154.51 -0.12 -0.71 16 3 C -0.14 -1.21 8.47 37.16 0.31 -0.90 16 4 C -0.15 -1.30 8.12 37.16 0.30 -0.99 16 5 C -0.10 -1.18 4.28 -26.73 -0.11 -1.29 16 6 C -0.64 -8.43 5.47 37.16 0.20 -8.23 16 7 S 2.60 49.09 5.08 -107.50 -0.55 48.54 16 8 O -0.93 -21.25 17.20 -57.54 -0.99 -22.24 16 9 O -0.96 -19.62 16.85 -57.54 -0.97 -20.59 16 10 N -0.94 -19.06 2.79 -59.81 -0.17 -19.22 16 11 C 0.22 5.10 3.95 -5.20 -0.02 5.08 16 12 C -0.53 -14.57 8.75 -34.44 -0.30 -14.87 16 13 H 0.08 2.50 7.21 -52.49 -0.38 2.12 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 16 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 20 C 0.18 3.44 4.82 -83.78 -0.40 3.04 16 21 C -0.15 -2.36 9.31 -39.38 -0.37 -2.73 16 22 C -0.11 -1.51 10.04 -39.61 -0.40 -1.91 16 23 C -0.14 -1.92 10.04 -39.55 -0.40 -2.32 16 24 C -0.11 -1.73 10.04 -39.61 -0.40 -2.13 16 25 C -0.11 -2.06 9.51 -39.38 -0.37 -2.44 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.13 1.42 5.01 -51.92 -0.26 1.16 16 38 H 0.13 1.63 6.43 -51.93 -0.33 1.30 16 39 H 0.04 0.82 6.83 -51.93 -0.35 0.46 16 40 H 0.03 0.73 7.52 -51.93 -0.39 0.34 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.11 1.47 6.63 -52.49 -0.35 1.12 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 45 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 46 H 0.15 3.22 6.20 -52.49 -0.33 2.90 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -33.81 375.74 -10.08 -43.88 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.30 Total: 3.52 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: -1.87 Total: -29.47 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.61 Total: -45.18 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -1.96 Total: -42.83 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.55 Total: 48.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.81 -10.08 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232502986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.426 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds